View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21676_high_1 (Length: 574)

Name: NF21676_high_1
Description: NF21676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21676_high_1
NF21676_high_1
[»] chr2 (18 HSPs)
chr2 (30-563)||(9297426-9297958)
chr2 (30-368)||(9286290-9286628)
chr2 (412-550)||(9286128-9286266)
chr2 (363-487)||(9062252-9062373)
chr2 (362-491)||(9290945-9291072)
chr2 (369-483)||(9315061-9315175)
chr2 (375-468)||(7117095-7117187)
chr2 (412-487)||(9285281-9285356)
chr2 (425-491)||(9076759-9076822)
chr2 (425-491)||(9069162-9069225)
chr2 (504-554)||(9326343-9326393)
chr2 (504-555)||(9285383-9285434)
chr2 (504-554)||(9318487-9318537)
chr2 (363-402)||(9318619-9318658)
chr2 (449-491)||(8574530-8574571)
chr2 (443-485)||(9318566-9318608)
chr2 (355-388)||(9286262-9286295)
chr2 (375-408)||(10334763-10334796)
[»] chr7 (1 HSPs)
chr7 (66-358)||(7723810-7724106)
[»] scaffold0667 (2 HSPs)
scaffold0667 (422-488)||(1565-1632)
scaffold0667 (363-402)||(1638-1677)
[»] chr3 (2 HSPs)
chr3 (504-554)||(37461273-37461323)
chr3 (451-487)||(37461427-37461463)


Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 30 - 563
Target Start/End: Complemental strand, 9297958 - 9297426
Alignment:
Q  30 aaaaggaggaggcggaacaagccaaatagatagacatatagtaagcaactatcttgatgttccactctttatatatgtgaaaaaattgtatagcctcaat 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9297958 aaaaggaggaggcggaacaagccaaatagatagacatatagtaagcaactatcttgatgttccactctttatatatgtgaaaaaatagtatagcctcaat 9297859  T
Q  130 gcaatgtatatatgcctaagtgacacaattttaaattgcatagtttagattggatataaaatatgatctatatcttttgttttacttttgtaactcctct 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9297858 gcaatgtatatatgcctaagtgacacaattttaaattgcatagtttagattggatataaagtatgatctatatcttttgttttacttttgtaactcctct 9297759  T
Q  230 ctcacacaatgaaacatctctgcttaaatcaatttgaaagaacctcaataggtaattcttagtttcaattttatgtatatgtttccgattgggtatggat 329  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9297758 ctcacacaat-aaacatctctgcttaaatcaatttgaaagaacctcaataggtaattcttagtttcaattttatgtatatgtttcagattgggtatggat 9297660  T
Q  330 tagccgataattacctaaaaatatagtttgagtttttgaattgtatgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaag 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9297659 tagccgataattacctaaaaatatagtttgagtttttgaattgtatgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaag 9297560  T
Q  430 aatttgatgaggaatcctctctccctctggcctttctaaaaggatcttctgcttttatctttgagaaaatatggatatgtaatagtccatattttccttt 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9297559 aatttgatgaggaatcctctctccctctggcctttctaaaaggatcttctgcttttatctttgagaaaatatggatatgtaatagtccatattttccttt 9297460  T
Q  530 atgatatttgtaattgaaactctctgcggtctgt 563  Q
    ||||||||||||||||||||||||||||||||||    
T  9297459 atgatatttgtaattgaaactctctgcggtctgt 9297426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 368
Target Start/End: Complemental strand, 9286628 - 9286290
Alignment:
Q  30 aaaaggaggaggcggaacaagccaaatagatagacatatagtaagcaactatcttgatgttccactctttatatatgtga----aaaaattgtatagcct 125  Q
    ||||||||||||||||||||||||| | |||||||||   |||||||||||| ||||||||||||| |||||||||||||    |||||| |||||||||    
T  9286628 aaaaggaggaggcggaacaagccaacttgatagacatt--gtaagcaactattttgatgttccactttttatatatgtgagagaaaaaatagtatagcct 9286531  T
Q  126 caatgcaatgtatatatgcctaagtgacacaattttaaattgcatagtttagattggatataaaatatgatctatatcttttgttttacttttgtaactc 225  Q
    ||||| |||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  9286530 caatgtaatgtataaatgcc-aagtgacacaattttaaaatgcatagtttagattggatataaagtatgatctatatcttttgttttacttt-gtaactc 9286433  T
Q  226 ctctctcacacaatgaaacatctctgcttaaatcaatttgaaagaacctcaataggtaattcttagtttcaattttatgtatatgtttccgattgggtat 325  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||| ||||||||||    
T  9286432 ctctctcacacaacgaaacatctctgctgaaatcaatttgaaagaaccttaataggtaattcttagtttgaaatttatgtatatgtttcagattgggtat 9286333  T
Q  326 ggattagccgataattacctaaaaatatagtttgagtttttga 368  Q
    ||||||||||||||||||||| ||||||||||||||| |||||    
T  9286332 ggattagccgataattacctagaaatatagtttgagtgtttga 9286290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 412 - 550
Target Start/End: Complemental strand, 9286266 - 9286128
Alignment:
Q  412 tcacattagagtgtgaagaatttgatgaggaatcctctctccctctggcctttctaaaaggatcttctgcttttatctttgagaaaatatggatatgtaa 511  Q
    ||||||||| || | |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||    
T  9286266 tcacattagggtataaagagtttgatgatgaatcctctctccctctggcctttctaaaaggatcttctgctttaatctttgagaaaatatggatctggaa 9286167  T
Q  512 tagtccatattttcctttatgatatttgtaattgaaact 550  Q
    ||||||||||||| | ||||||||||||||| |||||||    
T  9286166 tagtccatattttgccttatgatatttgtaactgaaact 9286128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 363 - 487
Target Start/End: Original strand, 9062252 - 9062373
Alignment:
Q  363 ttttgaattgtatgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaagaatttgatgaggaatcctctctccctctggcct 462  Q
    |||||| ||||| ||||||||||||| ||||||   |||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||    
T  9062252 ttttgagttgtaagtctgagatcacacttatcc---ttgtgtaaaaatctcacattaaggtgtgaagaatttgatgatgaatcctctctccctctggcct 9062348  T
Q  463 ttctaaaaggatcttctgcttttat 487  Q
     |||||||||||| | |||||||||    
T  9062349 atctaaaaggatcatttgcttttat 9062373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 362 - 491
Target Start/End: Complemental strand, 9291072 - 9290945
Alignment:
Q  362 tttttgaattgtatgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaagaatttgatgaggaatcctctctccctctggcc 461  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| || || |||||||||||| ||| |||||||||||||| ||    
T  9291072 tttttgaattgtatgtctgagatcacacttatccctcttgtgtaaaaatctgacattagggtatgtagaatttgatgatgaaccctctctccctctgacc 9290973  T
Q  462 tttctaaaaggatcttctgcttttatcttt 491  Q
    | ||||||||   ||||||||||| |||||    
T  9290972 tatctaaaag--acttctgcttttgtcttt 9290945  T

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Target: chr2; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 369 - 483
Target Start/End: Complemental strand, 9315175 - 9315061
Alignment:
Q  369 attgtatgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaagaatttgatgaggaatcctctctccctctggcctttctaa 468  Q
    |||||||||||||||||||| ||||||||||| ||||||||| | ||||||| || |  |||||||||||| ||||||||||||||||||||||||||||    
T  9315175 attgtatgtctgagatcacacttatccctcttttgtaaaaatatgacattagggtatttagaatttgatgatgaatcctctctccctctggcctttctaa 9315076  T
Q  469 aaggatcttctgctt 483  Q
    |||||||| ||||||    
T  9315075 aaggatctgctgctt 9315061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 375 - 468
Target Start/End: Original strand, 7117095 - 7117187
Alignment:
Q  375 tgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaagaatttgatgaggaatcctctctccctctggcctttctaa 468  Q
    |||| ||||||||| ||||||| | | |||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||| |||||    
T  7117095 tgtccgagatcacatttatcccacct-tgtaaaaatctcacattaggatgtgaagaatttgatgatgaatcctctctccctctggcctctctaa 7117187  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 412 - 487
Target Start/End: Original strand, 9285281 - 9285356
Alignment:
Q  412 tcacattagagtgtgaagaatttgatgaggaatcctctctccctctggcctttctaaaaggatcttctgcttttat 487  Q
    ||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||  | |||||||||    
T  9285281 tcacattagtgtgtgaagaatttgattatgaatcctctctccctctggcctttctaaaaggattatttgcttttat 9285356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 425 - 491
Target Start/End: Original strand, 9076759 - 9076822
Alignment:
Q  425 tgaagaatttgatgaggaatcctctctccctctggcctttctaaaaggatcttctgcttttatcttt 491  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9076759 tgaagaatttgatga---atcctctctccctctggcctttctaaaaggatcttctgcctttatcttt 9076822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 425 - 491
Target Start/End: Original strand, 9069162 - 9069225
Alignment:
Q  425 tgaagaatttgatgaggaatcctctctccctctggcctttctaaaaggatcttctgcttttatcttt 491  Q
    |||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  9069162 tgaagaatttgatga---atcctctctccctctggcctttctaaatggatcttctgcttttgtcttt 9069225  T

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Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 504 - 554
Target Start/End: Complemental strand, 9326393 - 9326343
Alignment:
Q  504 atatgtaatagtccatattttcctttatgatatttgtaattgaaactctct 554  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  9326393 atatggaatagtccatatttgcctttatgatatttgtaattgaaactctct 9326343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 504 - 555
Target Start/End: Original strand, 9285383 - 9285434
Alignment:
Q  504 atatgtaatagtccatattttcctttatgatatttgtaattgaaactctctg 555  Q
    ||||| |||||||||||||| || ||||||||||||||||||||||||||||    
T  9285383 atatggaatagtccatatttccccttatgatatttgtaattgaaactctctg 9285434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 504 - 554
Target Start/End: Complemental strand, 9318537 - 9318487
Alignment:
Q  504 atatgtaatagtccatattttcctttatgatatttgtaattgaaactctct 554  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||||||||||    
T  9318537 atatggaatagtccatatttccctttattatatttgtaattgaaactctct 9318487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 9318658 - 9318619
Alignment:
Q  363 ttttgaattgtatgtctgagatcacagttatccctcttgt 402  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  9318658 ttttgaattgtatgtctgagatcacatttatccctcttgt 9318619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 491
Target Start/End: Original strand, 8574530 - 8574571
Alignment:
Q  449 tctccctctggcctttctaaaaggatcttctgcttttatcttt 491  Q
    |||||||||||||||||| |||||||||||||||||| |||||    
T  8574530 tctccctctggcctttct-aaaggatcttctgcttttgtcttt 8574571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 485
Target Start/End: Complemental strand, 9318608 - 9318566
Alignment:
Q  443 atcctctctccctctggcctttctaaaaggatcttctgctttt 485  Q
    |||||||||||||||| ||||||| |||||||| |||||||||    
T  9318608 atcctctctccctctgacctttcttaaaggatcgtctgctttt 9318566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 388
Target Start/End: Complemental strand, 9286295 - 9286262
Alignment:
Q  355 gtttgagtttttgaattgtatgtctgagatcaca 388  Q
    ||||||||||||||||||||| ||||||||||||    
T  9286295 gtttgagtttttgaattgtatctctgagatcaca 9286262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 408
Target Start/End: Complemental strand, 10334796 - 10334763
Alignment:
Q  375 tgtctgagatcacagttatccctcttgtgtaaaa 408  Q
    ||||| ||||||||||||||||||||||||||||    
T  10334796 tgtctaagatcacagttatccctcttgtgtaaaa 10334763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 66 - 358
Target Start/End: Complemental strand, 7724106 - 7723810
Alignment:
Q  66 tatagtaagcaactatcttgatgttccactctttatatatgtgaaaaaa-ttgtatagcctcaatgcaatg-tatatatgcctaagtgacacaattttaa 163  Q
    |||||||||||||| | | |||||| | || |||||| ||||||||||| |||||| |||||||||   || ||||||||  ||||||||| ||||||||    
T  7724106 tatagtaagcaactttgtcgatgtttccctttttatacatgtgaaaaaaattgtattgcctcaatgttgtgctatatatga-taagtgacaaaattttaa 7724008  T
Q  164 attgcatagtttagattggatataaaatatgatctatatcttttg---ttttacttttgtaactcctctctcaca-caatgaaacatctctgcttaaatc 259  Q
    | || || |||||||| ||||||||| |||||||||||| | | |   |||||||||||||||| ||||||||||  || ||||||| ||| ||||||||    
T  7724007 aatgtattgtttagatcggatataaagtatgatctatatatctcgtgtttttacttttgtaacttctctctcacattaacgaaacatatctacttaaatc 7723908  T
Q  260 aatttgaaagaacctcaataggtaattcttagtttcaattttatgtatatgtttccgattgggtatggattagccgataattacctaaaaatatagttt 358  Q
    ||||||||||||||| || || | | | |||| | ||| |||||||||||  ||| | || | |||||||| |  |||||| |||||||||||||||||    
T  7723907 aatttgaaagaaccttaaaagtttagttttagctacaaatttatgtatattattcag-tttgttatggattggttgataataacctaaaaatatagttt 7723810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 422 - 488
Target Start/End: Complemental strand, 1632 - 1565
Alignment:
Q  422 gtgtgaagaatttgatgaggaatcctctctccctctggcc-tttctaaaaggatcttctgcttttatc 488  Q
    |||||||||||||||||| |||||||||||| |||||||| |||| ||||||||| ||||||||||||    
T  1632 gtgtgaagaatttgatgatgaatcctctctctctctggccttttcgaaaaggatcgtctgcttttatc 1565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 1677 - 1638
Alignment:
Q  363 ttttgaattgtatgtctgagatcacagttatccctcttgt 402  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  1677 ttttgaatagtatgtctgagatcacacttatccctcttgt 1638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 504 - 554
Target Start/End: Complemental strand, 37461323 - 37461273
Alignment:
Q  504 atatgtaatagtccatattttcctttatgatatttgtaattgaaactctct 554  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||||||||    
T  37461323 atatggaatagtccatagttccctttatgatatttgtaattgaaactctct 37461273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 487
Target Start/End: Complemental strand, 37461463 - 37461427
Alignment:
Q  451 tccctctggcctttctaaaaggatcttctgcttttat 487  Q
    ||||||||||||||||||| |||||||||||||||||    
T  37461463 tccctctggcctttctaaacggatcttctgcttttat 37461427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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