View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21676_high_10 (Length: 360)

Name: NF21676_high_10
Description: NF21676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21676_high_10
NF21676_high_10
[»] chr7 (10 HSPs)
chr7 (256-356)||(35073965-35074067)
chr7 (287-356)||(35100732-35100802)
chr7 (308-356)||(35085466-35085514)
chr7 (269-356)||(42795344-42795434)
chr7 (87-124)||(42795614-42795651)
chr7 (148-200)||(42795502-42795554)
chr7 (148-191)||(35085284-35085327)
chr7 (155-198)||(43026940-43026983)
chr7 (287-329)||(43026796-43026838)
chr7 (148-191)||(35100591-35100634)


Alignment Details
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 256 - 356
Target Start/End: Original strand, 35073965 - 35074067
Alignment:
Q  256 gatgaaaatcacatga-ttttacaaacataaataagtatcgcttggagagtagaagagatata-gagatacttgagaaaagcagcttatcgtacctgttt 353  Q
    |||||||||| ||||| ||||||||  || | ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  35073965 gatgaaaatcgcatgaattttacaatgatgattaagtatcgcttggagagtagaagagagataagagatacttgagaaaagcagcttattgtacctgttt 35074064  T
Q  354 ctg 356  Q
    |||    
T  35074065 ctg 35074067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 35100732 - 35100802
Alignment:
Q  287 taagtatcgcttggagagtagaagagatata-gagatacttgagaaaagcagcttatcgtacctgtttctg 356  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  35100732 taagtatcgcttggagagtagaagagagataagagatacttgagaaaagcagcttatcgtacctgtttctg 35100802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 35085466 - 35085514
Alignment:
Q  308 aagagatatagagatacttgagaaaagcagcttatcgtacctgtttctg 356  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35085466 aagagagatagagatacttgagaaaagcagcttatcgtacctgtttctg 35085514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 356
Target Start/End: Complemental strand, 42795434 - 42795344
Alignment:
Q  269 tgattttacaaacataaataagtatcgcttggagagtagaagagatatagagatacttg----agaaaagcagcttatcgtacctgtttctg 356  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |||    || |||| ||||||||| |||||||||||    
T  42795434 tgattttacaa-cataaataagtatcgcttggagagtataagagagatagagataattgataaagtaaagtagcttatcgcacctgtttctg 42795344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 42795651 - 42795614
Alignment:
Q  87 atgacgggatgggcctcccactcataaaaggagcagag 124  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42795651 atgacgggatgggcctcccactcataaaaggagcagag 42795614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 42795554 - 42795502
Alignment:
Q  148 aatcgaaaccagacaacacttataaacccgcactgaattacccctcaacatcg 200  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||| ||||||    
T  42795554 aatcgaaaccagctaacacttataaacccgcactgagttacccctccacatcg 42795502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 35085284 - 35085327
Alignment:
Q  148 aatcgaaaccagacaacacttataaacccgcactgaattacccc 191  Q
    |||| ||||||||| |||||||||||||||||||||||||||||    
T  35085284 aatccaaaccagacgacacttataaacccgcactgaattacccc 35085327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 43026983 - 43026940
Alignment:
Q  155 accagacaacacttataaacccgcactgaattacccctcaacat 198  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||    
T  43026983 accagacgacacttataaacccgcactgaattacccctccacat 43026940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 43026838 - 43026796
Alignment:
Q  287 taagtatcgcttggagagtagaagagatatagagatacttgag 329  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  43026838 taagtatcgcttggatagtagaagagagatagagatacttgag 43026796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 35100591 - 35100634
Alignment:
Q  148 aatcgaaaccagacaacacttataaacccgcactgaattacccc 191  Q
    |||| ||||||||| ||||||||||||||||| |||||||||||    
T  35100591 aatccaaaccagacgacacttataaacccgcattgaattacccc 35100634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University