View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21676_high_11 (Length: 355)
Name: NF21676_high_11
Description: NF21676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21676_high_11 |
 | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 38 - 334
Target Start/End: Original strand, 54967210 - 54967508
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataataca--gagaattttagc |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||| |
|
|
| T |
54967210 |
tgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcactagcggaaacgtgaaataaaagcgtaatgacacaaagagaattttagc |
54967309 |
T |
|
| Q |
136 |
gtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcacc |
235 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
54967310 |
gtggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacc |
54967409 |
T |
|
| Q |
236 |
cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatg |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54967410 |
cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatg |
54967508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 38 - 334
Target Start/End: Original strand, 44782524 - 44782822
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataataca--gagaattttagc |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| | ||| |||||||||||| |
|
|
| T |
44782524 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacactagcggaaacgtgaaatataaacgtaatgacacaaagagaattttagc |
44782623 |
T |
|
| Q |
136 |
gtggaaaaccttctcaatgtgagaaagggaaaaa-ccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcac |
234 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||| |||||| | |||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44782624 |
gtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttggacctcttaaaa-cttccactataatgataatgggaatacaacaacttcac |
44782722 |
T |
|
| Q |
235 |
ccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatg |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44782723 |
ccttaggtggatctcactacaatatatctctcaatttgcaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatg |
44782822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 50 - 334
Target Start/End: Original strand, 54979854 - 54980140
Alignment:
| Q |
50 |
cctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataataca--gagaattttagcgtggaaaacctt |
147 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||||| | ||| |||||||||||| ||||||||||| |
|
|
| T |
54979854 |
cctgcataatttccctcctccgtcaactcaaaataagcactagcggaaacgtgaaataaaagtgtaatgacacaaagagaattttagcatggaaaacctt |
54979953 |
T |
|
| Q |
148 |
ctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcacccttaggtggatc |
247 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54979954 |
ctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccttaggtggatc |
54980053 |
T |
|
| Q |
248 |
tcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatg |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
54980054 |
tcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcgctatttctctcacaagaaaactctctatgaggatg |
54980140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 38 - 314
Target Start/End: Complemental strand, 39299001 - 39298725
Alignment:
| Q |
38 |
tgttgggaaatgcctgc-ataatttccctcctccgtgaactcaaaatag-gcactagcggaaacgtgaaatataagcgtaataatac--agagaatttta |
133 |
Q |
| |
|
|||||||||||| || | |||||||||||||| | |||||| ||||||| ||| |||| ||||||||||||||||| ||||| | || ||| ||||||| |
|
|
| T |
39299001 |
tgttgggaaatgacttccataatttccctccttcatgaacttaaaatagcgcattagcagaaacgtgaaatataagtgtaatgacacgaagataatttta |
39298902 |
T |
|
| Q |
134 |
gcgtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttca |
233 |
Q |
| |
|
| ||| |||||||||||||||||| |||| ||||| ||||| |||||| |||||||||| |||||||||||||||||| || ||||||||||||||| |
|
|
| T |
39298901 |
gtgtgaaaaaccttctcaatgtgatgaagg-aaaaatcacgggacccttgtgcctcttaaa--cttccactataatgataaagggaatacaacaacttca |
39298805 |
T |
|
| Q |
234 |
cccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaa |
314 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
39298804 |
cccttaggtggatctaactacaatatatctctcaatttgtaagg-acactctcacaaattggctcactatttctctcacaa |
39298725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 38 - 257
Target Start/End: Original strand, 18556305 - 18556523
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataatacagagaattttagcgt |
137 |
Q |
| |
|
|||||||||| ||| |||||||| |||||||| ||||||||||||||| || ||| ||||||||||||||||||||||| | ||| | ||||||||||| |
|
|
| T |
18556305 |
tgttgggaaacacctacataatttgcctcctccatgaactcaaaataggtaccagcagaaacgtgaaatataagcgtaatgacacataaaattttagcgt |
18556404 |
T |
|
| Q |
138 |
ggaaaaccttctcaatgtgagaaagg-gaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcaccc |
236 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||| ||||| ||||||| |||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
18556405 |
ggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcgagcctctt--aaacttccactataatgacaatgagaatacaacaacttcaccc |
18556502 |
T |
|
| Q |
237 |
ttaggtggatctcactacaat |
257 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
18556503 |
ttaggtggatctcattacaat |
18556523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 38 - 329
Target Start/End: Complemental strand, 17645981 - 17645701
Alignment:
| Q |
38 |
tgttgggaaatg-cctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataatacagagaattttagcg |
136 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||||||||||||| |||||| | ||| | || |||||| ||||| | ||| | ||||||||| |
|
|
| T |
17645981 |
tgttgggaaatgacctccataatttccctcatccgtgaactcaaaatagacactagtaggaacataaattataagtgtaatcacacaaa--attttagcg |
17645884 |
T |
|
| Q |
137 |
tggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcaccc |
236 |
Q |
| |
|
||||||||||||||||| | | ||| ||||||||||| || ||| || ||||||| |||||||||||||||||||| ||||||||||| || |
|
|
| T |
17645883 |
tggaaaaccttctcaatataaaaaa---aaaaaccacgggactcttgagcgtcttaaa--cttccactataatgataatgacaatacaacaac-----cc |
17645794 |
T |
|
| Q |
237 |
ttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatga |
329 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||||| ||||| |
|
|
| T |
17645793 |
ctaggtggatctcactacaacgtatctctcaatttgtaaggaacactcttacaaattggctcactatttatctcacaaggaaactctttatga |
17645701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 50603320 - 50603225
Alignment:
| Q |
127 |
aattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaa |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | |||||||||||||||| |||||||||| ||| ||||||||||| ||||||| ||||||| |
|
|
| T |
50603320 |
aattttagcgtggaaaaccttctcaatgtgagtaa-gaaaaaaccacggaacccgtaggcctctt--aaatctccactataataataatgggaatacaa |
50603225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 50603403 - 50603333
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaat |
106 |
Q |
| |
|
|||||||||||||| | | |||||| |||||||||||||||||||||| ||| ||||| |||||| |||| |
|
|
| T |
50603403 |
tgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacactttagcgaaaacgtaaaat |
50603333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 38 - 334
Target Start/End: Original strand, 25857131 - 25857426
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataatacagagaattttagcgt |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
25857131 |
tgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcactagcggaaacgtgaaatataagcgtaatgacacagagaattttagcgt |
25857230 |
T |
|
| Q |
138 |
ggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcaccct |
237 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
25857231 |
ggaaaaccttctcaatgtgagaaaaggaaaaaccacgggacccttgggcctctt-aaaacttccactataatgataatgggaatacaacaacttcacctt |
25857329 |
T |
|
| Q |
238 |
taggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatg |
334 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25857330 |
taggtggatctcactacaatatatctcttaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatg |
25857426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 37 - 334
Target Start/End: Original strand, 4835574 - 4835871
Alignment:
| Q |
37 |
gtgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataatacagagaattttagcg |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
4835574 |
gtgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcactagtggaaacgtgaaatataaacgtaatgacacagagaattttagcg |
4835673 |
T |
|
| Q |
137 |
tggaaaaccttctcaatgtgagaaagggaaaaa-ccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcacc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||| ||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
4835674 |
tggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaa-cttccactataatgataatgggaatgcaacaacttcacc |
4835772 |
T |
|
| Q |
236 |
cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatg |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4835773 |
cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatg |
4835871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 38 - 334
Target Start/End: Original strand, 4842648 - 4842946
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataataca--gagaattttagc |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||||| |
|
|
| T |
4842648 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagtgtaatgacacaaagagaattttagc |
4842747 |
T |
|
| Q |
136 |
gtggaaaaccttctcaatgtgagaaagggaaaaa-ccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcac |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||||| ||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
4842748 |
gtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggacccttgggcctcttaaaa-cttccactataatgataataggaatacaacaacttcac |
4842846 |
T |
|
| Q |
235 |
ccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatg |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
4842847 |
ccttaggtggatctcactacaatatatctctcaatttttaaggaacactctcacaaattggctcaatatttctctcacaagaaaactctttatgaggatg |
4842946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 37 - 334
Target Start/End: Original strand, 24379278 - 24379576
Alignment:
| Q |
37 |
gtgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataatacagaga--attttag |
134 |
Q |
| |
|
||||||| ||||| || ||||||||| |||||||||||||| |||||||||||||| |||||||| |||||||| |||||| | | ||||| |||||| |
|
|
| T |
24379278 |
gtgttggaaaatgtctacataatttctctcctccgtgaacttaaaataggcactagtggaaacgtaaaatataaacgtaatgacatagagataattttaa |
24379377 |
T |
|
| Q |
135 |
cgtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcac |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||| ||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
24379378 |
cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatctttgggcctcttaaaa-cttccactataatgataataggaatacaacaacttcac |
24379476 |
T |
|
| Q |
235 |
ccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatg |
334 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
24379477 |
ccttaggtggatctccctacaatatatctctcaatttgtaaggaacactctcataaattggctcactatttctttcacaagaaaactctctatgaggatg |
24379576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 37 - 329
Target Start/End: Original strand, 27340934 - 27341222
Alignment:
| Q |
37 |
gtgttgggaaatg-cctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataatacagagaattttagc |
135 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
27340934 |
gtgttgggaaataacctccataatttccctcttttgtgaactcaaaataggcactagcggaaacatgaaatataagcgtaatgacacagagaattttagc |
27341033 |
T |
|
| Q |
136 |
gtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcacc |
235 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| |||||| |||||| ||||||| |||| ||||||||||||||||||| ||||| | |
|
|
| T |
27341034 |
gtggaaaaccttctcaatgtaagaaa-ggaaaaaccacgggacccttgtacctctt--aaacttctactacaatgataatggaaatacaataactt--ct |
27341128 |
T |
|
| Q |
236 |
cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatga |
329 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
27341129 |
cttagatggatctcactacaatatatctctcaatttgtaaggaacactctcacaggttggctcactatttctctcacaaagaaactctatatga |
27341222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 38 - 323
Target Start/End: Complemental strand, 17846051 - 17845763
Alignment:
| Q |
38 |
tgttgggaaatgcctgc-ataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataataca-gagaattttagc |
135 |
Q |
| |
|
|||||||||||| || | ||||||| ||||||||||||||| ||||| |||| ||| |||| ||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
17846051 |
tgttgggaaatgacttccataattttcctcctccgtgaacttaaaattggcattaggagaaatgtgaaatataagcgtaaagacacaagagaattttaga |
17845952 |
T |
|
| Q |
136 |
gtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcacc |
235 |
Q |
| |
|
||||||||||||| ||||||||| |||| ||||||||| | ||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17845951 |
gtggaaaaccttcccaatgtgaggaagg-aaaaaccacaggacctttggacctcttaaa--cttccactataatgataatggaaatacaacaacttcacc |
17845855 |
T |
|
| Q |
236 |
cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctca----taaattggcttactatttctctcacaagaaaactct |
323 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| || | ||||||||||||||| ||||||| |
|
|
| T |
17845854 |
cttaggtgaatctcactacaatatatctctcaatttgtaaggaacactctcataattaaattgactcaatatttctctcacaaggaaactct |
17845763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 103 - 329
Target Start/End: Original strand, 13465024 - 13465247
Alignment:
| Q |
103 |
aaatataagcgtaataatacagagaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttcca |
202 |
Q |
| |
|
||||||| ||||||| | ||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| | |||| |
|
|
| T |
13465024 |
aaatatatgcgtaatgacacaaaaaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaa-catcca |
13465122 |
T |
|
| Q |
203 |
ctataatgataatggaaatacaacaacttcacccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttacta |
302 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||| | |||| |
|
|
| T |
13465123 |
ctataatgataatgggaatacaacaagttcaccctcaggtggatctcactacaatgtatctctcaatttgtaaggaacactcttacaaattggttcacta |
13465222 |
T |
|
| Q |
303 |
tttctctcacaagaaaactctctatga |
329 |
Q |
| |
|
|| |||||||||||||| ||||||| |
|
|
| T |
13465223 |
tt--tctcacaagaaaacattctatga |
13465247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 151 - 329
Target Start/End: Complemental strand, 4603760 - 4603584
Alignment:
| Q |
151 |
aatgtgagaaagggaaaaa-ccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcacccttaggtggatctc |
249 |
Q |
| |
|
|||| |||||||||||||| |||||| ||| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4603760 |
aatgggagaaagggaaaaaaccacgggacctttgggcctcttaaac-cttccactataatgataatggaaatacaacaactttacccttaggtggatctc |
4603662 |
T |
|
| Q |
250 |
actacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatga |
329 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || | ||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
4603661 |
actacaatatatctttcaatttgtaaggaaca--cttacaaattggctctctatttctctcacaagaaaactctttatga |
4603584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 38 - 329
Target Start/End: Original strand, 38994060 - 38994332
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataataca--gagaattttagc |
135 |
Q |
| |
|
||||||||||| | ||||||||||| || ||| |||||| ||||||| ||| ||||||| |||||||||| ||||| | ||| |||||||||| | |
|
|
| T |
38994060 |
tgttgggaaatacatgcataatttctatcatccatgaacttaaaatagacaccgacggaaacatgaaatataaatgtaatgacacaaagagaattttaac |
38994159 |
T |
|
| Q |
136 |
gtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcacc |
235 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||| || |||||||||| | |
|
|
| T |
38994160 |
gtggaaaaccttctcaatgcgagaaagggaaaaaccacgggaccctcgagcctcttaaaa-ctttcattataatgata---------------------c |
38994237 |
T |
|
| Q |
236 |
cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaa-gaaaactctctatga |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
38994238 |
cttaggtggatctcactacaatatatctctcaatttgtaaggaacactatcacaaattggctcattatttctctcacaaggaaaactctctatga |
38994332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 24380163 - 24380113
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggca |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24380163 |
tgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca |
24380113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 38 - 334
Target Start/End: Original strand, 9757212 - 9757511
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataataca--gagaattttagc |
135 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |
|
|
| T |
9757212 |
tgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaatgacacaaagagaattttagc |
9757311 |
T |
|
| Q |
136 |
gtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaa-acttccactataatgataatggaaatacaacaacttcac |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9757312 |
gtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaacttcac |
9757411 |
T |
|
| Q |
235 |
ccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatg |
334 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
9757412 |
ccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcaaaagaaaactctctatgaagatg |
9757511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 55 - 323
Target Start/End: Original strand, 42682854 - 42683118
Alignment:
| Q |
55 |
ataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataatacagagaattttagcgtggaaaaccttctcaatg |
154 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| |||||||| |||||| |||||||| |||||| | ||| | |||| |||||||||||||||||||||| |
|
|
| T |
42682854 |
ataatttccttcccccgtgaactcaaaatagacactagcgaaaacgtaaaatataaacgtaatgacacata--atttcagcgtggaaaaccttctcaatg |
42682951 |
T |
|
| Q |
155 |
tgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcacccttaggtggatctcactac |
254 |
Q |
| |
|
||||||||| ||||| ||||| |||||| | |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42682952 |
tgagaaagg-aaaaatcacgggacccttggacctcttaaaa-cttccactataatgataatgggaatacaacaacttcacccttaggtgcatctcactac |
42683049 |
T |
|
| Q |
255 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactct |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42683050 |
aatatatctctcaatttgtaaggaacactcttacaaattggctcactatttctctcacaagaaaactct |
42683118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 63 - 329
Target Start/End: Original strand, 37286908 - 37287174
Alignment:
| Q |
63 |
cctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaat--aatacagagaattttagcgtggaaaaccttctcaatgtgagaa |
160 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||| |||||| | | ||| ||||||||| ||||||||||||||||||||| || |
|
|
| T |
37286908 |
cctcctccgtgagctcaaaataaacactagcggaaacgtgaaatataaacgtaatgacagaaagaaaattttagcatggaaaaccttctcaatgtga-aa |
37287006 |
T |
|
| Q |
161 |
agggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaac-ttcacccttaggtggatctcactacaatat |
259 |
Q |
| |
|
| ||||||| ||||| ||||||| || |||| |||||||||||||||| ||||| ||||||||||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
37287007 |
aaggaaaaatcacgggacccttaagcatctt--aaacttccactataataataataagaatacaacaactttcacccttagatggagctcactacaatat |
37287104 |
T |
|
| Q |
260 |
atctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatga |
329 |
Q |
| |
|
|||||||||||||||||||||| | || |||| |||| ||| ||||||||| ||| ||| ||||||||| |
|
|
| T |
37287105 |
atctctcaatttgtaaggaacattaacacaaatcggctcactgtttctctcagaaggaaattctctatga |
37287174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 25002905 - 25002947
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaa |
82 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
25002905 |
tgttgggaaatgc-tgcataatttccct-ctccgtgaactcaaaa |
25002947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 38 - 334
Target Start/End: Complemental strand, 41481815 - 41481517
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataataca--gagaattttagc |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| | ||| |||||||||||| |
|
|
| T |
41481815 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacactagcggaaacgtgaaatataaacgtaatgacacaaagagaattttagc |
41481716 |
T |
|
| Q |
136 |
gtggaaaaccttctcaatgtgagaaagggaaaaa-ccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcac |
234 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41481715 |
gtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttgggcctcttaaaa-cttccactataatgataatgggaatacaacaacttcac |
41481617 |
T |
|
| Q |
235 |
ccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatg |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41481616 |
ccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatg |
41481517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 38 - 334
Target Start/End: Complemental strand, 36167813 - 36167516
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataataca--gagaattttagc |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| |||||||||||| |
|
|
| T |
36167813 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataaacgtaatgacacaaagagaattttagc |
36167714 |
T |
|
| Q |
136 |
gtggaaaaccttctcaatgtgagaaagggaaaaa-ccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcac |
234 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36167713 |
gtggaaaaccttctcaatatgagaaagggaaaaaaccacgga-cccttgggcctcttaaaa-cttccactataatgataatgggaatacaacaacttcac |
36167616 |
T |
|
| Q |
235 |
ccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatg |
334 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36167615 |
ccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatg |
36167516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 43 - 326
Target Start/End: Original strand, 18951129 - 18951410
Alignment:
| Q |
43 |
ggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataatacagagaattttagcgtggaaa |
142 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |||||||| |||||| |
|
|
| T |
18951129 |
ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcactagcggaaacatgaaatataagcgtaatgacacaga--attttagcatggaaa |
18951226 |
T |
|
| Q |
143 |
accttctcaatgtgagaaagggaaaaa-ccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcacccttagg |
241 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||| || ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18951227 |
accttctcaatgtgagaaagggaaaaaaccacgagacctttgggcttcttaaaa-cttccactataatgataatgggaatacaacaacttcacccttagg |
18951325 |
T |
|
| Q |
242 |
tggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctcta |
326 |
Q |
| |
|
| |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| | |||||| |||| ||||||||||||| |
|
|
| T |
18951326 |
ttgatctcactataatttatctctcaatttgtaaggaacactctcacaaattggctcattatttccctcaagagaaaactctcta |
18951410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16936154 - 16936117
Alignment:
| Q |
1 |
tacacacttaataaatagaaattcaaatgataatgagt |
38 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
16936154 |
tacacacttaataaatagaaattcaaacggtaatgagt |
16936117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 18116885 - 18116930
Alignment:
| Q |
39 |
gttgggaaatgcctgcataatttccctcctccgtgaactcaaaata |
84 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||||| |||||| |
|
|
| T |
18116885 |
gttgggaaatgcctgcataatttacctcgtctgtgaacttaaaata |
18116930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 38 - 334
Target Start/End: Complemental strand, 2936 - 2638
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataataca--gagaattttagc |
135 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||| |
|
|
| T |
2936 |
tgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacactagcggaaacgtgaaatataagcgtaatgacacaaagagaattttagc |
2837 |
T |
|
| Q |
136 |
gtggaaaaccttctcaatgtgagaaagggaaaaa-ccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcac |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2836 |
gtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaa-cttccactataatgataatgggaatacaacaacttcac |
2738 |
T |
|
| Q |
235 |
ccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatg |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2737 |
ccttaggtggatctcactacaatatatctctcaatttgtaaggaacgctctcacaaattggctcactatttctctcacaagaaaactctctatgaggatg |
2638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 38 - 334
Target Start/End: Original strand, 342217 - 342513
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataatacagagaattttagcgt |
137 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
342217 |
tgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcactagcagaaacgtgaaatataagcgtaatgacacaaagaattttagcgt |
342316 |
T |
|
| Q |
138 |
ggaaaaccttctcaatgtgagaaagggaa-aaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcaccc |
236 |
Q |
| |
|
| |||||||||||||| ||||||| |||| ||||||||| | |||| |||||||||||| ||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
342317 |
gaaaaaccttctcaatatgagaaatggaagaaaccacgggatccttgggcctcttaaaa-cttccactataatgataatgggaatacaacaatttcaccc |
342415 |
T |
|
| Q |
237 |
ttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatg |
334 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
342416 |
ttaggtgtatctgactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatg |
342513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 38 - 255
Target Start/End: Complemental strand, 22981710 - 22981494
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataatacagagaattttagcgt |
137 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
22981710 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcactagcggaaacgtgaaaaataagcgtaatgacacagagaattttagcgt |
22981611 |
T |
|
| Q |
138 |
ggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcaccct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22981610 |
ggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctctt-aaaacttccactataatgataatgggaatacaacaacttcaccct |
22981512 |
T |
|
| Q |
238 |
taggtggatctcactaca |
255 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
22981511 |
taggtggatttcactaca |
22981494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 38 - 255
Target Start/End: Original strand, 23806698 - 23806914
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataatacagagaattttagcgt |
137 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
23806698 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcactagcggaaacgtgaaaaataagcgtaatgacacagagaattttagcgt |
23806797 |
T |
|
| Q |
138 |
ggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcaccct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23806798 |
ggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctctt-aaaacttccactataatgataatgggaatacaacaacttcaccct |
23806896 |
T |
|
| Q |
238 |
taggtggatctcactaca |
255 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
23806897 |
taggtggatttcactaca |
23806914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 38 - 254
Target Start/End: Original strand, 31151926 - 31152133
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataagcgtaataatacagagaattttagc |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| | |||| | | | || | ||||||| |
|
|
| T |
31151926 |
tgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcactttagcggaaacataaaat------gacacacaac--aaaattttaat |
31152017 |
T |
|
| Q |
136 |
gtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcacc |
235 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||| | || |||||||||| ||| ||||||||||| ||||||| ||||||| | ||||||| |
|
|
| T |
31152018 |
gtggaaaaccttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctctt--aaatctccactataataataatgggaatacaa-atcttcacc |
31152114 |
T |
|
| Q |
236 |
cttaggtggatctcactac |
254 |
Q |
| |
|
|| || |||| || ||||| |
|
|
| T |
31152115 |
ctcagatggacctaactac |
31152133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 52 - 329
Target Start/End: Complemental strand, 37038112 - 37037838
Alignment:
| Q |
52 |
tgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataatacagagaattttagcgtggaaaaccttctca |
151 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| | |||||| | ||| ||| |||||||| |||||||||||||| |
|
|
| T |
37038112 |
tgcataatttctctcctccgtgaactcaaaataggcactagcgaaaacctgaaatctttgcgtaaagacacatagatttttagcgaggaaaaccttctca |
37038013 |
T |
|
| Q |
152 |
atgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcacccttaggtggatctcac |
251 |
Q |
| |
|
|||||||||||| | ||||||||| |||||| ||||||||||| ||| |||||||| ||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
37038012 |
atgtgagaaagg-agaaaccacgggacccttgggcctcttaaa--ctttcactataacgataatgagaatacaacaacttcactcttaggtggatctcat |
37037916 |
T |
|
| Q |
252 |
tacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatga |
329 |
Q |
| |
|
|||||| | |||||||||| |||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37037915 |
tacaatctgactctcaatttataagaaacactctcacaaattggctcactatttctctcacaagaaaactctctatga |
37037838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 91 - 321
Target Start/End: Complemental strand, 27642261 - 27642033
Alignment:
| Q |
91 |
agcggaaacgtgaaatataagcgtaataatacagagaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctct |
190 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||||||| ||||| ||||| ||| || |||| |
|
|
| T |
27642261 |
agcggaaacgtgaaatataagcgtaatgatacaaggaattttggcgtgtaaaaccttctcaatgtgagaaaggaaaaaatcacggggtcctcgggtctct |
27642162 |
T |
|
| Q |
191 |
taaaaacttccactataatgataatggaaatacaacaacttcacccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataa |
290 |
Q |
| |
|
| |||||||||||||||| ||||||| |||| |||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
27642161 |
t--aaacttccactataataataatgggaataaaacaacttcatctttaagtggatctcactacaatatatctctctatttgtaaggaacactctcacaa |
27642064 |
T |
|
| Q |
291 |
attggcttactatttctctcacaagaaaact |
321 |
Q |
| |
|
|||| ||| |||||||||||| ||| ||||| |
|
|
| T |
27642063 |
attgacttcctatttctctcaaaaggaaact |
27642033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 38 - 252
Target Start/End: Original strand, 22763814 - 22764029
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaataataca--gagaattttagc |
135 |
Q |
| |
|
|||||||||||| | ||||||||| | ||||| | ||| | ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
22763814 |
tgttgggaaatgtcagcataattttcttcctcggagaatttaaaataggcactagcagaaacgtgaaatataagcgtaatgatacaaagagaattttagc |
22763913 |
T |
|
| Q |
136 |
gtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcacc |
235 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||| || |||||||| ||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
22763914 |
atggaaaaccttctcaatatgagaaagggaaaaaccacgggaccattgggcctctt-aaaacttatgctataatgataatgggaatacaacaacttcact |
22764012 |
T |
|
| Q |
236 |
cttaggtggatctcact |
252 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
22764013 |
cttaggtgaatctcact |
22764029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 125 - 329
Target Start/End: Complemental strand, 16698603 - 16698403
Alignment:
| Q |
125 |
agaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaataca |
224 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||| | || |||||| | |||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
16698603 |
agaattttagtgtggaaatccttctcaatgtgagaaagggaaaaattatgggacccttggacctcttaaaa-cttccactataatgataatgggaataca |
16698505 |
T |
|
| Q |
225 |
acaacttcacccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctc |
324 |
Q |
| |
|
|| |||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| |||||| | ||||||||| ||||||||||||||| |
|
|
| T |
16698504 |
ac---ttcacccttatgtggatctcactacaatgtatctctcaatttgtaagaaacactctcacgaattgggtccctatttctcccacaagaaaactctc |
16698408 |
T |
|
| Q |
325 |
tatga |
329 |
Q |
| |
|
||||| |
|
|
| T |
16698407 |
tatga |
16698403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 38 - 245
Target Start/End: Complemental strand, 33808213 - 33808018
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaataatacagagaattttagc |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | || || ||||||||| |
|
|
| T |
33808213 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacac---aacaa-------aattttagc |
33808124 |
T |
|
| Q |
136 |
gtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcacc |
235 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||| |||| |||||||||| ||| ||||||||||| ||||||| ||||||| | ||||||| |
|
|
| T |
33808123 |
gtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaggcctctt--aaatctccactataataataatgggaatacaa-atcttcacc |
33808028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 38 - 245
Target Start/End: Complemental strand, 33811867 - 33811672
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaataatacagagaattttagc |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | || || ||||||||| |
|
|
| T |
33811867 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacac---aacaa-------aattttagc |
33811778 |
T |
|
| Q |
136 |
gtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcacc |
235 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||| |||| |||||||||| ||| ||||||||||| ||||||| ||||||| | ||||||| |
|
|
| T |
33811777 |
gtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaggcctctt--aaatctccactataataataatgggaatacaa-atcttcacc |
33811682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 38 - 245
Target Start/End: Complemental strand, 33816785 - 33816590
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaataatacagagaattttagc |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | || || ||||||||| |
|
|
| T |
33816785 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacac---aacaa-------aattttagc |
33816696 |
T |
|
| Q |
136 |
gtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaacaacttcacc |
235 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||| |||| |||||||||| ||| ||||||||||| ||||||| ||||||| | ||||||| |
|
|
| T |
33816695 |
gtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaggcctctt--aaatctccactataataataatgggaatacaa-atcttcacc |
33816600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 16698670 - 16698609
Alignment:
| Q |
38 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaac |
99 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16698670 |
tgttgggaaatatatgcataatttccatcctccgtgaactcagaataggcactagcggaaac |
16698609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 127 - 323
Target Start/End: Original strand, 26579 - 26771
Alignment:
| Q |
127 |
aattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacggaacccttaggcctcttaaaaacttccactataatgataatggaaatacaac |
226 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||| |||||| |||| |||||| ||||||||||| |||||||| ||||||||| | |||||||| |
|
|
| T |
26579 |
aattttagggtggaaaaccttttcaatgtgagtaagg-aaaaactacgggacccttgggcctcttaaa--cttccactctaatgataacgagaatacaac |
26675 |
T |
|
| Q |
227 |
aacttcacccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactct |
323 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
26676 |
tactccacccttaggtggatctcactacaatttatctctcaatttgtaaggaacactctcacaaattggctcactattt-tctcacaaaaaaactct |
26771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University