View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21676_high_13 (Length: 355)
Name: NF21676_high_13
Description: NF21676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21676_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 29924698 - 29924354
Alignment:
| Q |
1 |
ccacttcatctgcataatcaatgaaaaagtagaaaaaattaatccagctacataagtaattctaaaattgaaatatttaaccaatttttcccagtttcca |
100 |
Q |
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| T |
29924698 |
ccacttcatctgcataatcaatgaaaaagtagaaaaaattaatccagctacataagtaattctaaaattgaaatatttaaccaatttttcccagtttcca |
29924599 |
T |
|
| Q |
101 |
ccagatttgcctaaactataggaacggcatcctgtacacacttaggttgaattaatatacaaagcataagcaccctatcaacacataactgaattttctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29924598 |
ccagatttgcctaaactataggaacggcatcctgtacacacttaggttgaattaatatacaaagcataagcaccctatcaacacataactgaattttctc |
29924499 |
T |
|
| Q |
201 |
accaatggaccaaagcatagttcaggcaactttacacaccaaaataatacctcgaaagctagtgctattaatggagaagcaaaaattattaatttctaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29924498 |
accaatggaccaaagcatagttcaggcaactttacacaccaaaataatacctcgaaagctagtgctattaatggagaagcaaaaattattaatttctaag |
29924399 |
T |
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| Q |
301 |
tagaaagaaagacaaaagatatgctctgatcataatgtgtctgtg |
345 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29924398 |
tagaaagaaagacaaaagatatgctatgatcataatgtgtctgtg |
29924354 |
T |
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