View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21676_high_14 (Length: 351)
Name: NF21676_high_14
Description: NF21676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21676_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 345
Target Start/End: Complemental strand, 476795 - 476460
Alignment:
| Q |
12 |
aagatattctagcttctattcagtgcaagaaggcaccgcagaaacaagcaaaacgggacatatcagcgtcattactcattagtctacatcaccatactta |
111 |
Q |
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| T |
476795 |
aagatattctagcttctattcagcgcaagaagccacagcagaaacaagcaaaacgggacatatcagcgtcattactcattagtctacatcaccatactta |
476696 |
T |
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| Q |
112 |
taaaggtgctcgtgtaacagaagttgtaaaaattgtcaacgaaatacatat--tgagataaaggacatacttgaacaataaaaagtaaaagactaatatg |
209 |
Q |
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| T |
476695 |
taaaggtgctcgtgtaacagaagttgtaaaaattgtcaacgacatacatattatgagataaaggacatacttgaacaataaaaagtaaaagactaatatg |
476596 |
T |
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| Q |
210 |
ctacaacaaaataacttaaaagaaccctgaaagcaatcttgtcttttattttac-aaacataagcactaaacttgaataaaaatggatccnnnnnnngac |
308 |
Q |
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||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
476595 |
ctacaacaaaataactt-aaagaaccctgaaagtaattttgtcttttattttacaaaacataagcactaaacttgaataaaaatggatcctttttttgac |
476497 |
T |
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| Q |
309 |
aaatgaaaatggattctgaaactccatgaacaccaaa |
345 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
476496 |
aaatgaaaatggatcctgaaactccatgaacaccaaa |
476460 |
T |
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