View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21676_high_15 (Length: 350)
Name: NF21676_high_15
Description: NF21676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21676_high_15 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 48951027 - 48951364
Alignment:
| Q |
1 |
cgaacaacatctttagcaatttttgctaactcttgggctttgtttctaatttggacagcttcatcacccccatccatcaaccttctcatagccttcttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48951027 |
cgaacaacatctttagcaatttttgctaactcttgggctttgtttctaatttggacagcttcatcacccccatccatcaaccttctcatagccttcttta |
48951126 |
T |
|
| Q |
101 |
taaaatctctcttcaccaactttttcatatctcgaaaagctgttgtgatccattcatctgcacctacttccactcctatcccacgcacatgagttgtgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48951127 |
taaaatctctcttcaccaactttttcatatctcgaaaagctgttgtgatccactcatctgcacctacttccactcctatcccacgcacatgagttatgag |
48951226 |
T |
|
| Q |
201 |
cttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctccgtcacagagttccacccacaatgtgtcaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48951227 |
cttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctccgtcacagagttccacccacaatgtgtcaaa |
48951326 |
T |
|
| Q |
301 |
aacgcgccaacagcaggatgccctaatataaccatctg |
338 |
Q |
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| T |
48951327 |
aacgcgccaacggcaggatgccctaatataaccatctg |
48951364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 262
Target Start/End: Complemental strand, 48912599 - 48912479
Alignment:
| Q |
142 |
gttgtgatccattcatctgcacctacttccactcctatcccacgcacatgagttgtgagcttctcattgtagaactgatcactatgcaccggccacgtga |
241 |
Q |
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| T |
48912599 |
gttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaactgttctccatgcatcggccacgtga |
48912500 |
T |
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| Q |
242 |
tcatcggaacccctacactaa |
262 |
Q |
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|||| ||||||||| |||||| |
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| T |
48912499 |
tcattggaacccctgcactaa |
48912479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 48958086 - 48958181
Alignment:
| Q |
159 |
tgcacctacttccactcctatcccacgcacatgagttgtgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccc |
254 |
Q |
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| T |
48958086 |
tgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccc |
48958181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 302
Target Start/End: Complemental strand, 1847 - 1547
Alignment:
| Q |
2 |
gaacaacatctttagcaatttttgctaactcttgggctttgtttctaatttggacagcttcatcacccccatccatcaaccttctcatagccttctttat |
101 |
Q |
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||||||||| |||||| |||||||| | |||||| ||| | ||| ||||| | ||||||||||| | ||||||||||| || | |||||||||||| |
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| T |
1847 |
gaacaacatgtttagctatttttgcaatctcttgagctctacgtcttatttgaatggcttcatcaccactgtccatcaacctccttaaagccttctttat |
1748 |
T |
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| Q |
102 |
aaaatctctcttcaccaactttttcatatctcgaaaagctgttgtgatccattcatctgcacctacttccactcctatcccacgcacatgagttgtgagc |
201 |
Q |
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| T |
1747 |
acgatctctccctattagcttttccatgtcccgaaaagcaatggtaagccactcatctgcaccgacttccactccaatcccatgcacctgagttatcaac |
1648 |
T |
|
| Q |
202 |
ttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctccgtcacagagttccacccacaatgtgtcaaaa |
301 |
Q |
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| || || ||||| ||||||||||| || ||||| |||||||| |||| ||| |||||| |||||| || | |||||||||||||||||||||||||| |
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| T |
1647 |
gtttcgttatagaattgatcactatgtactggccatgtgatcattggaattcctgcactaacagcctcggttatagagttccacccacaatgtgtcaaaa |
1548 |
T |
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| Q |
302 |
a |
302 |
Q |
| |
|
| |
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| T |
1547 |
a |
1547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 6682 - 6638
Alignment:
| Q |
225 |
atgcaccggccacgtgatcatcggaacccctacactaatagcctc |
269 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
6682 |
atgcaccggccacgtgatcatcggaacccctgcactaacagcctc |
6638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 305
Target Start/End: Complemental strand, 10731 - 10584
Alignment:
| Q |
158 |
ctgcacctacttccactcctatcccacgcacatgagttgtgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctac |
257 |
Q |
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| T |
10731 |
ctgcacccacttcccccccaatcccccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgc |
10632 |
T |
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| Q |
258 |
actaatagcctccgtcacagagttccacccacaatgtgtcaaaaacgc |
305 |
Q |
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||||| |||||| || ||||||||||||||||||| |||||| |
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| T |
10631 |
actaaccgcctccacggtggaattccacccacaatgtgtcataaacgc |
10584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 12483704 - 12483601
Alignment:
| Q |
159 |
tgcacctacttccactcctatcccacgcacatgagttgtgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca |
258 |
Q |
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|||||| |||||||| || ||||| ||||||| |||| |||| ||||||||||| || || |||| || ||||||||||||||||| |||| |||| || |
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| T |
12483704 |
tgcaccgacttccacaccaatccctcgcacattagttatgagtttctcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctgca |
12483605 |
T |
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| Q |
259 |
ctaa |
262 |
Q |
| |
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|||| |
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| T |
12483604 |
ctaa |
12483601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 308
Target Start/End: Complemental strand, 12590409 - 12590260
Alignment:
| Q |
159 |
tgcacctacttccactcctatcccacgcacatgagttgtgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca |
258 |
Q |
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|||||| ||||||||||| || ||| |||||| |||| | | |||||||||||| || || |||| || || ||||| ||||||||||||| || || |
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| T |
12590409 |
tgcaccaacttccactccaattccatgcacatcagttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccagca |
12590310 |
T |
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| Q |
259 |
ctaatagcctccgtcacagagttccacccacaatgtgtcaaaaacgcgcc |
308 |
Q |
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| T |
12590309 |
ctaaccgcctccacgacggaattccatccacaatgtgtcataaacgcgcc |
12590260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 12641678 - 12641608
Alignment:
| Q |
199 |
agcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctc |
269 |
Q |
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||||||||||| |||||||| || | ||||| |||||||||||||| |||| |||| |||||| |||||| |
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| T |
12641678 |
agcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctgcactaacagcctc |
12641608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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