View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21676_high_2 (Length: 516)
Name: NF21676_high_2
Description: NF21676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21676_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 4200928 - 4201153
Alignment:
| Q |
21 |
catcatcatcatctgcctctctttgcaatcgagatcagaagcaagagcagccaagtcgaattcagagaaaaacggaccttgaagaacagtgttgacgcaa |
120 |
Q |
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| T |
4200928 |
catcatcatcatctgcctctctttgcaatcgagatcagaagcaagagcagccaagtcaaattcagagaaaaacggaccttgaagaacagtgttgacgcaa |
4201027 |
T |
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| Q |
121 |
tgaacagcgcaaagcttcgattcttgtacctcgtgatacaacattcctccattgcttgctccttccatcatcattgaaaatcgaattcaattgaattgaa |
220 |
Q |
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| T |
4201028 |
tgaacagcgcaaagcttcgattcttgtacctcgtgatacaacattcctccattgcttgctccttccatcatcattgaaaatcgaattcaattgaattgaa |
4201127 |
T |
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| Q |
221 |
caaaattgaatatgaactaaacccta |
246 |
Q |
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| T |
4201128 |
caaaattgaatatgaactaaacccta |
4201153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 4201211 - 4201258
Alignment:
| Q |
304 |
gttgcagaagacgagaaa-ggaagaagatttggaaattaaaagaggtc |
350 |
Q |
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| T |
4201211 |
gttgcagaagacgagaaaaggaagaagatttggaaattaaaagaggtc |
4201258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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