View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21676_high_21 (Length: 329)
Name: NF21676_high_21
Description: NF21676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21676_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 8297155 - 8297306
Alignment:
| Q |
25 |
catcaagtttttgaaatatctaataaacaccaaagaattatccatcacagccaccttaattatcatccatttttcacccagattatccagattttctccc |
124 |
Q |
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| T |
8297155 |
catcaagtttttgaaatatctaataaacaccaaagaattatccatcacagccaccttaattatcatccatttttcatccagattatccagattttctccc |
8297254 |
T |
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| Q |
125 |
ttcttctccaattgtttcgctttttccataaatgtatttagctcagccaaca |
176 |
Q |
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| T |
8297255 |
ttcttctccaattgtttcgctttttccataaatgtatttagctcagccaaca |
8297306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 29 - 176
Target Start/End: Original strand, 8300737 - 8300884
Alignment:
| Q |
29 |
aagtttttgaaatatctaataaacaccaaagaattatccatcacagccaccttaattatcatccatttttcacccagattatccagattttctcccttct |
128 |
Q |
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|||||||||| |||||||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||| | ||| ||||||||||||||||||||| |
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| T |
8300737 |
aagtttttgatatatctaacaaacagcaaagaattatccaacacaaccaccttaattatcatccatttttcgtcaagactatccagattttctcccttct |
8300836 |
T |
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| Q |
129 |
tctccaattgtttcgctttttccataaatgtatttagctcagccaaca |
176 |
Q |
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| T |
8300837 |
tctcgaattgtttctctttttccataaatttaattagctcagccaaca |
8300884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 18279443 - 18279341
Alignment:
| Q |
74 |
gccaccttaattatcatccatttttcacccagattatccagattttctcccttcttctccaattgtttcgctttttccataaatgtatttagctcagcca |
173 |
Q |
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| T |
18279443 |
gccacattgattatcatccattgtacatcaagattatccagattttcaaccttcttctccaattgattatctttttccataaatttatttagctcagcca |
18279344 |
T |
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| Q |
174 |
aca |
176 |
Q |
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||| |
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| T |
18279343 |
aca |
18279341 |
T |
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