View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21677_high_12 (Length: 325)
Name: NF21677_high_12
Description: NF21677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21677_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 154 - 315
Target Start/End: Complemental strand, 37483804 - 37483645
Alignment:
| Q |
154 |
gtattcggttcctgcaaattcaaaaactcttgttttaaatttgcagggactgagttgaaacnnnnnnncttacagggactaaaaccaaaacactctataa |
253 |
Q |
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| T |
37483804 |
gtattcggttcctgcaaattcaaaaactcttgttttaaatttgcagggactgagttgaaacaaaaaaacttacagggactaaaaccaaaacactctataa |
37483705 |
T |
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| Q |
254 |
ttgcgcagagacttaaattgtatttgtttttggtgtttgactgatagagtttatggtctgtg |
315 |
Q |
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| T |
37483704 |
tt--gcagagacttaaattgtatttgtttttggtgtttgattgatagagtttatggtctgtg |
37483645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 37483955 - 37483843
Alignment:
| Q |
3 |
aatagtcctcacttacgcaaatctggaagtagacctgttgtttatgatcttggtattatttaagtttccgcaattatagtgttattcatgattctagttt |
102 |
Q |
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| T |
37483955 |
aatagtcctcacttacgcaaatctggaagtagacctgttgtttatgatcttggtattatttaagtttccg-aattatagtgttattcatgattctagttt |
37483857 |
T |
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| Q |
103 |
ccgcaattatagtg |
116 |
Q |
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| T |
37483856 |
ccgcaattatagtg |
37483843 |
T |
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