View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21677_high_2 (Length: 386)

Name: NF21677_high_2
Description: NF21677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21677_high_2
NF21677_high_2
[»] chr3 (4 HSPs)
chr3 (27-356)||(37486991-37487316)
chr3 (199-289)||(3987016-3987108)
chr3 (199-244)||(11581460-11581505)
chr3 (208-288)||(22902776-22902857)
[»] chr7 (3 HSPs)
chr7 (199-273)||(36514428-36514502)
chr7 (199-270)||(1740791-1740862)
chr7 (199-283)||(19262654-19262738)
[»] chr8 (3 HSPs)
chr8 (207-289)||(30456441-30456525)
chr8 (199-268)||(34196064-34196133)
chr8 (221-273)||(25985506-25985558)
[»] chr6 (1 HSPs)
chr6 (199-289)||(33084027-33084119)
[»] chr5 (5 HSPs)
chr5 (221-290)||(3097143-3097212)
chr5 (200-289)||(11002645-11002734)
chr5 (199-273)||(31636141-31636215)
chr5 (199-289)||(33667187-33667277)
chr5 (238-283)||(32516533-32516578)
[»] chr2 (3 HSPs)
chr2 (199-288)||(23714482-23714570)
chr2 (199-288)||(24102154-24102242)
chr2 (199-289)||(9578924-9579014)
[»] chr1 (2 HSPs)
chr1 (221-289)||(39422285-39422354)
chr1 (197-270)||(26016427-26016500)
[»] chr4 (7 HSPs)
chr4 (207-270)||(35555876-35555939)
chr4 (199-270)||(54470197-54470268)
chr4 (210-289)||(10775654-10775735)
chr4 (207-290)||(17900448-17900533)
chr4 (199-289)||(36557251-36557342)
chr4 (201-249)||(42285923-42285971)
chr4 (197-273)||(42293468-42293544)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 27 - 356
Target Start/End: Original strand, 37486991 - 37487316
Alignment:
Q  27 tcatgcattttaaagtagcgccgcattacaagataaccgtttctttgcaaatgcaatgttagnnnnnnnnnnnnnnnnnnnnnngtaagtagcaatcaaa 126  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||                      ||||||||||||||||    
T  37486991 tcatgcattttaaagtagcaccgcattacaagataaccgtgtctttgcaaatgcaatgttagaaaaagaaaataaaaactaaaagtaagtagcaatcaaa 37487090  T
Q  127 accaatggtctcttttgtggcatacactggtttcccttgttcacagtatgagtggatggtggaaccatattttctacatacccaaaccacataggtctag 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37487091 accaatggtctcttttgtggcatacactggtttcccttgttcacagtatgagtggatggtggaaccatattttctacatgcccaaaccacataggtctag 37487190  T
Q  227 tttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcatttttaatttaaatttaattttcatcatgatagaaaccaacgatgc 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||| |||||||| | ||||||||||||||||     
T  37487191 tttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcattt----tttaaatttatttttcatcgtaatagaaaccaacgatga 37487286  T
Q  327 tcttcattcaaaacaatggactgaactttt 356  Q
    ||||||||||||||||||||||||||||||    
T  37487287 tcttcattcaaaacaatggactgaactttt 37487316  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 3987108 - 3987016
Alignment:
Q  199 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctct--aatatcgtcatttttaatt 289  Q
    ||||||| |||||||||| || |||||||||||| ||| |||||||||||| ||| ||| | ||||||||||  ||||||||||||| |||||    
T  3987108 tctacattcccaaaccacctaagtctagtttctaccatcttttctactataggtgataccccaactctctctccaatatcgtcatttctaatt 3987016  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 11581505 - 11581460
Alignment:
Q  199 tctacatacccaaaccacataggtctagtttctaacatattttcta 244  Q
    |||||||||||||||||| || |||||||||||| ||| |||||||    
T  11581505 tctacatacccaaaccacctaagtctagtttctaccatcttttcta 11581460  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 22902857 - 22902776
Alignment:
Q  208 ccaaaccacataggtctagtttctaacatatttt-ctactatatgtgttactcaaactctctctaatatcgtcatttttaat 288  Q
    |||||| || || |||||||||||| ||| |||| | |||||| ||| |||||||||||||||||||||  |||||| ||||    
T  22902857 ccaaacaacctaagtctagtttctaccatctttttcgactataggtgctactcaaactctctctaatattttcatttctaat 22902776  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 36514428 - 36514502
Alignment:
Q  199 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaat 273  Q
    ||||||| |||||||||| || |||||||||||| ||| |||||||||||| ||| ||| | |||||||||||||    
T  36514428 tctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactctctctaat 36514502  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 1740862 - 1740791
Alignment:
Q  199 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctct 270  Q
    |||||||||||||||||| || | |||||||| | ||||||||||||| ||  || ||| ||||||||||||    
T  1740862 tctacatacccaaaccacctaagcctagtttccaccatattttctactgtagatgctacccaaactctctct 1740791  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 19262654 - 19262738
Alignment:
Q  199 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcattt 283  Q
    ||||||| | |||||||| || | | |||||||| ||| |||||||| ||| ||| ||| | ||||||||||||||| |||||||    
T  19262654 tctacatgctcaaaccacctaagccaagtttctaccatcttttctacaataggtgctaccccaactctctctaatattgtcattt 19262738  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 30456441 - 30456525
Alignment:
Q  207 cccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaac--tctctctaatatcgtcatttttaatt 289  Q
    ||||||||||||| |||||||||||| ||| |||||||||||| |||  |||| |||  |||||||||| ||||||||| |||||    
T  30456441 cccaaaccacataagtctagtttctaccatcttttctactataggtgcaactcgaactatctctctaatgtcgtcatttctaatt 30456525  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 34196133 - 34196064
Alignment:
Q  199 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctct 268  Q
    ||||||| ||||||||||||| ||||||||||||   | |||||||||||| ||| ||| | ||||||||    
T  34196133 tctacatgcccaaaccacataagtctagtttctactgttttttctactataggtgctaccccaactctct 34196064  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 25985558 - 25985506
Alignment:
Q  221 gtctagtttctaacatattttctactatatgtgttactcaaactctctctaat 273  Q
    |||||||||||| ||| |||||||||||| ||| ||| | |||||||||||||    
T  25985558 gtctagtttctaccatcttttctactataggtgctaccccaactctctctaat 25985506  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 33084119 - 33084027
Alignment:
Q  199 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaa--ctctctctaatatcgtcatttttaatt 289  Q
    ||||||| |||||||||| || |||||||||||| ||| |||||||| ||| ||| ||| | ||  ||||||||||||||||||||| |||||    
T  33084119 tctacattcccaaaccacctaagtctagtttctaccatcttttctaccataggtgctaccccaactctctctctaatatcgtcatttctaatt 33084027  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 3097212 - 3097143
Alignment:
Q  221 gtctagtttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcatttttaattt 290  Q
    |||||||||||| ||| ||||||| |||| ||||||| | |||||||| |||| ||||||||||||||||    
T  3097212 gtctagtttctagcatcttttctaatataggtgttaccccaactctctataatgtcgtcatttttaattt 3097143  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 289
Target Start/End: Original strand, 11002645 - 11002734
Alignment:
Q  200 ctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcatttttaatt 289  Q
    |||||| |||||||||| || |||||||||||| ||| ||||||||| || ||| ||| | ||||||||||||| | ||||||| |||||    
T  11002645 ctacatgcccaaaccacctaagtctagtttctaccatgttttctactgtaggtgctacccgaactctctctaatgttgtcatttctaatt 11002734  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 31636141 - 31636215
Alignment:
Q  199 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaat 273  Q
    ||||||| |||||||||| || |||||||||||| ||| |||||||||||| ||| ||| | |||| ||||||||    
T  31636141 tctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactttctctaat 31636215  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 33667277 - 33667187
Alignment:
Q  199 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcatttttaatt 289  Q
    ||||||| |||||||||| || |||||||||||| ||| |||||||||||| ||| ||| | |||||||  |||| | ||||||| |||||    
T  33667277 tctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactctcgttaatgttgtcatttctaatt 33667187  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 32516578 - 32516533
Alignment:
Q  238 ttttctactatatgtgttactcaaactctctctaatatcgtcattt 283  Q
    |||||||||||| ||||||||| ||||||||||||| | |||||||    
T  32516578 ttttctactataagtgttactccaactctctctaatgttgtcattt 32516533  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 288
Target Start/End: Original strand, 23714482 - 23714570
Alignment:
Q  199 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcatttttaat 288  Q
    ||||||| || |||| ||||| |||||||||| | ||| |||||||||||||||| ||| | |||||| |||||| ||||||||||||||    
T  23714482 tctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgctac-ccaactctatctaatgtcgtcatttttaat 23714570  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 288
Target Start/End: Original strand, 24102154 - 24102242
Alignment:
Q  199 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcatttttaat 288  Q
    ||||||| || |||| ||||| |||||||||| | ||| |||||||||||||||| ||| | |||||| |||||| ||||||||||||||    
T  24102154 tctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgctac-ccaactctatctaatgtcgtcatttttaat 24102242  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 9578924 - 9579014
Alignment:
Q  199 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcatttttaatt 289  Q
    |||||||  ||||||||| || ||||| |||  | ||| ||| ||||||||||||| || | |||||||||||| || |||||||||||||    
T  9578924 tctacatgtccaaaccacctaagtctattttacatcatctttactactatatgtgtcaccccaactctctctaacattgtcatttttaatt 9579014  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 39422285 - 39422354
Alignment:
Q  221 gtctagtttctaacatattttctactatatgtgttactcaaactctc-tctaatatcgtcatttttaatt 289  Q
    ||||||||||||  || |||||||||||||||||||||| ||||||| |||||||| ||||||| |||||    
T  39422285 gtctagtttctactatcttttctactatatgtgttactccaactctcttctaatattgtcatttctaatt 39422354  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 26016500 - 26016427
Alignment:
Q  197 tttctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctct 270  Q
    |||||||||||||||||||| ||  ||||||||||| ||| ||||||  |||| ||||||| | ||||||||||    
T  26016500 tttctacatacccaaaccacctaaatctagtttctaccatcttttctcatataggtgttaccccaactctctct 26016427  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 35555876 - 35555939
Alignment:
Q  207 cccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctct 270  Q
    |||||||||| || |||||||||||| ||| |||||||||||| ||| ||| | ||||||||||    
T  35555876 cccaaaccacctaagtctagtttctaccatcttttctactataggtgctacccgaactctctct 35555939  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 54470268 - 54470197
Alignment:
Q  199 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctct 270  Q
    ||||||| |||||||||| || |||||||||| | ||| |||||||||||| ||| ||| | ||||||||||    
T  54470268 tctacatgcccaaaccacttaagtctagtttccaccatcttttctactataggtgctaccccaactctctct 54470197  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 10775654 - 10775735
Alignment:
Q  210 aaaccacataggtctagtttctaacatattttctactatatgtgttactc--aaactctctctaatatcgtcatttttaatt 289  Q
    ||||||| || |||||||||||| ||| |||||||||||| ||||||| |  | |||||||||||| | ||||||| |||||    
T  10775654 aaaccacctatgtctagtttctaccatcttttctactataggtgttaccccaacactctctctaatgttgtcatttctaatt 10775735  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 290
Target Start/End: Complemental strand, 17900533 - 17900448
Alignment:
Q  207 cccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactc--tctctaatatcgtcatttttaattt 290  Q
    ||||||||||||  |||||||||||| | | |||||||||||| ||| ||| | |||||  |||||||| ||||||||| ||||||    
T  17900533 cccaaaccacatgagtctagtttctaccgtcttttctactataggtgctaccccaactccgtctctaatgtcgtcatttctaattt 17900448  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 36557251 - 36557342
Alignment:
Q  199 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctct--aatatcgtcatttttaatt 289  Q
    ||||||| |||||||||| || |||||||||||| ||| |||||||||||  ||| | | | ||||||||||  ||||||||||||| |||||    
T  36557251 tctacattcccaaaccac-taagtctagtttctaccatcttttctactatgggtgctgccccaactctctctccaatatcgtcatttctaatt 36557342  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 42285923 - 42285971
Alignment:
Q  201 tacatacccaaaccacataggtctagtttctaacatattttctactata 249  Q
    ||||| |||||||||| || |||||||||||| ||| ||||||||||||    
T  42285923 tacatgcccaaaccacctaagtctagtttctaccatcttttctactata 42285971  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 42293468 - 42293544
Alignment:
Q  197 tttctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaat 273  Q
    |||||||||||||||||||| || | | |||||| | ||| |||||||||||| ||| ||| | ||||||| |||||    
T  42293468 tttctacatacccaaaccacctaagccgagtttccatcatcttttctactataggtgctacgccaactctcgctaat 42293544  T

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