View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21677_high_5 (Length: 353)
Name: NF21677_high_5
Description: NF21677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21677_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 23 - 353
Target Start/End: Original strand, 47043060 - 47043392
Alignment:
| Q |
23 |
catcatcattgaattaattagacaaatgatttttcattannnnnnnaaaggcatttgctttattatgctttctgttttaaacaaaaccaaagtgagacca |
122 |
Q |
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| T |
47043060 |
catcatcattggattaattagacaaatgatttttcattatttttttaaaggcatttgctttattatgctttctgttttaaacaaaaccaaagtgagacca |
47043159 |
T |
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| Q |
123 |
taatattgagcaattttagaataagag--aatacttcaaattttgatttcatttaaattaatatgatagtaaatagttaccttcgatgccaaaattttga |
220 |
Q |
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| T |
47043160 |
taatattgagcaattttagaataagagagaatacttcaaattttgatttcatttaaattaatatgatagtaaatagtgaccttcgatgccaacattttga |
47043259 |
T |
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| Q |
221 |
tttcacaagtttcatatcattaaaggcatgccactgtattttctatttatttgtctgcatgcccctggttagctccaccgccacgactctccatggtcac |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47043260 |
tttcacaagtttcatatcattaaaggcatgccactgtattttctatttatttgtctgcatgcacctggttagctccaccgccacgactctccatggtcac |
47043359 |
T |
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| Q |
321 |
attacaattaacatacgtctccttttggctccc |
353 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
47043360 |
attacaattaacatacgtctccttttggctccc |
47043392 |
T |
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