View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21678_high_1 (Length: 443)

Name: NF21678_high_1
Description: NF21678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21678_high_1
NF21678_high_1
[»] chr1 (3 HSPs)
chr1 (38-443)||(47582203-47582608)
chr1 (38-421)||(47572505-47572901)
chr1 (380-430)||(47570697-47570747)


Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 38 - 443
Target Start/End: Original strand, 47582203 - 47582608
Alignment:
Q  38 agtcagtgaacctcacagaaaaccaaaaagtatatggcggtgcttggtgcctcccgtgcctatctgcagagaactgcagctggtgtcttagtgatgccat 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47582203 agtcagtgaacctcacagaaaaccaaaaagtatatggcggtgcttggtgcctcccatgcctatctgcagagaactgcagctggtgtcttagtgatgccat 47582302  T
Q  138 agctgaagttccaaccagttgctgcagaggaaaatctggaggcacaatattatatcccagttgtggtgttagatttgaattatatccattccacaaggca 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47582303 agctgaagttccaaccagttgctgcagaggaaaatctggaggcacaatattatatcccagttgtggtgttagatttgaattatatccattccacaaggca 47582402  T
Q  238 gacgacaataattcttgggtgctgcccccacccacaaatcctcgcctttcagctcgaccaggtttaaacttttgattatccctcatttacacttttttaa 337  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47582403 gacgacaataattcttgggtgctgcctccacccacaaatcctcgcctttcagctcgaccaggtttaaacttttgattatccctcatttacacttttttaa 47582502  T
Q  338 ttttacgaccatttctgacataataagacatcaatgtaatcataccatatattactgtcaacccatgattactatatctagcaaaagatatatcttctgt 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47582503 ttttacgaccatttctgacataataagacatcaatgtaatcataccatatattactgtcaacccatgattactatatctagcaaaagatatatcttctgt 47582602  T
Q  438 aagaac 443  Q
    ||||||    
T  47582603 aagaac 47582608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 38 - 421
Target Start/End: Original strand, 47572505 - 47572901
Alignment:
Q  38 agtcagtgaacctcacagaaaaccaaaaagtatatggcggtgcttggtgcctcccgtgcctatctgcagagaactgcagctggtgtcttagtgatgccat 137  Q
    ||||||||||  ||||||| ||||||||| |||||||   || ||||||| |||| | ||||||| |||| ||||| |||||||||||||| ||||||||    
T  47572505 agtcagtgaatatcacagacaaccaaaaactatatggttatgtttggtgcgtcccatacctatcttcagaaaactgtagctggtgtcttagcgatgccat 47572604  T
Q  138 agctgaagttccaaccagttgctgcagaggaaaatctggaggcacaatattatatcccagttgtggtgttagatttgaattatatccattccacaaggca 237  Q
    ||| ||| ||||||| ||||| ||||||||||||||||||||  ||||||| ||||||||||||||| ||| |||||| ||| |||| ||||||||||||    
T  47572605 agcagaaattccaactagttgttgcagaggaaaatctggaggagcaatattttatcccagttgtggtcttaaatttgacttaaatcctttccacaaggca 47572704  T
Q  238 gacgacaataattcttggg------tgctgcccccacccacaaatcctcgcctttcagctcgaccaggtttaaacttttgattatccctcatttacactt 331  Q
     || |||||  | ||||||       ||  || ||||| |||| ||||||   |||||||| ||||||||||| |||||||  |||| |||| || | ||    
T  47572705 cacaacaatgttgcttgggggccaccgcctccaccaccaacaattcctcgtgcttcagctccaccaggtttaagcttttgaaaatccttcatatatattt 47572804  T
Q  332 ttttaattttacgaccatttctgacataataagacatcaatgta------atcata-ccatatattactgtcaacccatgattactatatctagcaa 421  Q
    | |||||||||| | ||||| ||||| ||||||||| ||||  |      |||||| |||||||||||||||||||||||| |||||||||||||||    
T  47572805 tcttaattttactaacatttgtgacacaataagacagcaatcaagttaatatcatacccatatattactgtcaacccatgactactatatctagcaa 47572901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 430
Target Start/End: Original strand, 47570697 - 47570747
Alignment:
Q  380 taccatatattactgtcaacccatgattactatatctagcaaaagatatat 430  Q
    |||||||||| ||||||||||||||  ||||||||||||||| ||||||||    
T  47570697 taccatatatcactgtcaacccatggatactatatctagcaagagatatat 47570747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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