View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21678_high_10 (Length: 316)
Name: NF21678_high_10
Description: NF21678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21678_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 305
Target Start/End: Complemental strand, 35882223 - 35881932
Alignment:
| Q |
14 |
agaagggaaattaccggttaaagtgttgtttgataaatctaagtagtgaagattgtgtaaagaagaaatgggttttatgttatctttgagattgcagctt |
113 |
Q |
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| T |
35882223 |
agaagggaaattaccagttaaagtgttgtttgataaatctaagtagtgaagattgtgtaaagaagaaatgggttttatgttatctttgagattgcagctt |
35882124 |
T |
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| Q |
114 |
gaaagatcaaggtgttgtagtttggtaaggttttgaaaacctaagggaagtgctcttaagttgttgtgagaaaggtcgaggattttaaggttttggaagc |
213 |
Q |
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| T |
35882123 |
gaaagatcaaggtgttgtagtttggtaaggttttgaaaacctaagggaagtgctcttaagttgttgtgagaaaggtcgaggattttaaggttttggaagc |
35882024 |
T |
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| Q |
214 |
tagagagttgagcaacgttggtgaacctgttgtgtgagagattaaggttttgaatggttgaggttttattgttcaactcaatggtgatgctt |
305 |
Q |
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| T |
35882023 |
tagagagttgagcaacgttggtgaacctgttgtgtgagagattaaggttttgaatggttgaggttttattgttcaactcaatggtgatgctt |
35881932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 305
Target Start/End: Complemental strand, 24456424 - 24456133
Alignment:
| Q |
14 |
agaagggaaattaccggttaaagtgttgtttgataaatctaagtagtgaagattgtgtaaagaagaaatgggttttatgttatctttgagattgcagctt |
113 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456424 |
agaagggaaattaccagttaaagtgttgtttgataaatctaagtagtgaagattgtgtaaagaagaaatgggttttatgttatctttgagattgcagctt |
24456325 |
T |
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| Q |
114 |
gaaagatcaaggtgttgtagtttggtaaggttttgaaaacctaagggaagtgctcttaagttgttgtgagaaaggtcgaggattttaaggttttggaagc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456324 |
gaaagatcaaggtgttgtagtttggtaaggttttgaaaacctaagggaagtgctcttaagttgttgtgagaaaggtcgaggattttaaggttttggaagc |
24456225 |
T |
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| Q |
214 |
tagagagttgagcaacgttggtgaacctgttgtgtgagagattaaggttttgaatggttgaggttttattgttcaactcaatggtgatgctt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456224 |
tagagagttgagcaacgttggtgaacctgttgtgtgagagattaaggttttgaatggttgaggttttattgttcaactcaatggtgatgctt |
24456133 |
T |
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