View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21678_high_12 (Length: 306)
Name: NF21678_high_12
Description: NF21678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21678_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 38301399 - 38301144
Alignment:
| Q |
22 |
catcatcatcatcttctccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacatt |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38301399 |
catcatcatcatcttctccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacatt |
38301300 |
T |
|
| Q |
122 |
caaattccataaattaccattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttgtacttg |
221 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38301299 |
caaattccataaattaccattattaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttg |
38301200 |
T |
|
| Q |
222 |
ttaaagacgcatgagcccatgcaaaactcaaaatcggaagcgacggtggtaatggg |
277 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38301199 |
ttaaagacgcgtgagcccatgcaaaactcaaaatcggaagcgacggtggtaatggg |
38301144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 28 - 277
Target Start/End: Complemental strand, 38310035 - 38309786
Alignment:
| Q |
28 |
catcatcttctccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaatt |
127 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| |||| | |||||| ||||||||||||| ||||||| |||| ||||||||| |||||||||||||||| |
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| T |
38310035 |
catcgtctactccatctacatatcataattgaggaggataataattaaattgaacagtggctatcaaaacaattaaatcatatatatttacattcaaatt |
38309936 |
T |
|
| Q |
128 |
ccataaattaccattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttgtacttgttaaag |
227 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||| || |||||||| |
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| T |
38309935 |
acataaattaccattgccaacaaaattgtgcaaccaagtgcgagtacatattctagtttccacattatttggcaacatacgatctttatatttgttaaac |
38309836 |
T |
|
| Q |
228 |
acgcatgagcccatgcaaaactcaaaatcggaagcgacggtggtaatggg |
277 |
Q |
| |
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|| | |||||||||||||||||||||||| || ||||| ||||||||||| |
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|
| T |
38309835 |
acacgtgagcccatgcaaaactcaaaatcagatgcgacagtggtaatggg |
38309786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 27 - 277
Target Start/End: Complemental strand, 38307288 - 38307044
Alignment:
| Q |
27 |
tcatcatcttctccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaat |
126 |
Q |
| |
|
||||| |||| |||||||||| |||||||||||||||||| | ||| |||||| |||||||||||||| ||| | |||||||| |||||||||| |
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| T |
38307288 |
tcatcgtcttttccatctacaaatcataattgaagaggttaacaatgtaattgaccagtggttatcaaaacaacagaatcatat------acattcaaat |
38307195 |
T |
|
| Q |
127 |
tccataaattaccattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttgtacttgttaaa |
226 |
Q |
| |
|
| || | |||||||| |||| ||||||| || ||| |||||| ||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
38307194 |
tacacagattaccatcactaacgaaattgtacagccaactgcgagcacaaattctagtttccacatccatcggcaacatacgatctttatacttgttaaa |
38307095 |
T |
|
| Q |
227 |
gacgcatgagcccatgcaaaactcaaaatcggaagcgacggtggtaatggg |
277 |
Q |
| |
|
|||| ||||||||||||||| |||||||| ||||| || ||||||||||| |
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|
| T |
38307094 |
cacgcgtgagcccatgcaaaattcaaaatcagaagccacagtggtaatggg |
38307044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 264
Target Start/End: Complemental strand, 38322139 - 38321899
Alignment:
| Q |
24 |
tcatcatcatcttctccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattca |
123 |
Q |
| |
|
||||| || ||||||||| |||||||||||||||||| ||||| |||||| || ||| | | |||| |||| ||||| |||||||| |||||||| | | |
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|
| T |
38322139 |
tcatcgtcgtcttctccaactacatatcataattgaaaaggttaataattaaagtgacaactagttaccaaaacaatacaatcatatgtatttacactta |
38322040 |
T |
|
| Q |
124 |
aattccataaattaccattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttgtacttgtt |
223 |
Q |
| |
|
|||| | || |||||||| | ||||||||||| |||||| |||||||||| | ||||| |||| ||||||||| |||||||||||||| |||||||| |
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|
| T |
38322039 |
aattacgtagattaccatcgcgaacaaaattgtacaaccaattgcgagtacaaaatctagcatccaaattcatcggtaacatacgatctttatacttgtt |
38321940 |
T |
|
| Q |
224 |
aaagacgcatgagcccatgcaaaactcaaaatcggaagcga |
264 |
Q |
| |
|
||| ||| |||| |||||||| || ||||| ||||||| |
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| T |
38321939 |
aaaaacgtgcaagcctatgcaaaaatccaaatcagaagcga |
38321899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 277
Target Start/End: Complemental strand, 38314632 - 38314387
Alignment:
| Q |
33 |
tcttctccatctacatatcataattgaagaggtttataattcaattgaacag-tggttatcaaaccaataaaatcatatctatttacattcaaattccat |
131 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||| | |||| ||| ||||||||||| ||||| | | || | |||| ||||| ||||| || |
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|
| T |
38314632 |
tcttctccatctacatatcataatcgaagagattaataactaaattacccaggtggttatcaaaacaatacacttatttatattcacatttaaattagat |
38314533 |
T |
|
| Q |
132 |
aaattaccattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttgtacttgttaaagacgc |
231 |
Q |
| |
|
| |||||||| |||||||||||| || ||| ||||||| || |||||||||||||||| ||| || ||||| |||||||| |||||||| || || | |
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|
| T |
38314532 |
agattaccatcactaacaaaattgtacagccaactgcgagtgcaaattctagtttccacatccattggtaacatgcgatctttatacttgtttaacacac |
38314433 |
T |
|
| Q |
232 |
atgagcccatgcaaaactcaaaatcggaagcgacggtggtaatggg |
277 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || |||| |||||| |
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|
| T |
38314432 |
gtgagcccatgcaaaattcaaaatcagaagccactgtggcaatggg |
38314387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 42 - 277
Target Start/End: Complemental strand, 38318035 - 38317797
Alignment:
| Q |
42 |
tctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattccataa---attac |
138 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| |||||| || ||||||||| | |||| |||||||| |||||||||| ||| |||| ||||| |
|
|
| T |
38318035 |
tctacatatcacaattgaagaggttaataataaaattgaccactggttatcagaagaatacaatcatatttatttacatttaaagaacatagtagattac |
38317936 |
T |
|
| Q |
139 |
cattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttgtacttgttaaagacgcatgagcc |
238 |
Q |
| |
|
||| | | |||||||||| ||||| |||||||||| |||||||||||||||||| | |||| | ||||||||| |||||||||||||| | ||| || |
|
|
| T |
38317935 |
catcgcttacaaaattgtataaccaactgcgagtacagattctagtttccacattcgtgggcagcgtacgatcttcatacttgttaaagacacgtgaacc |
38317836 |
T |
|
| Q |
239 |
catgcaaaactcaaaatcggaagcgacggtggtaatggg |
277 |
Q |
| |
|
||||||||| ||| |||| ||||| || |||| |||||| |
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|
| T |
38317835 |
catgcaaaattcagaatcagaagcaacagtggcaatggg |
38317797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 38326859 - 38326598
Alignment:
| Q |
22 |
catcatcatcatcttctccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacatt |
121 |
Q |
| |
|
||||||| ||||| ||| ||||||||||||| ||||||||||||| |||||| ||| || | |||||||||||| ||| | | | | || ||| |||||| |
|
|
| T |
38326859 |
catcatcgtcatcctcttcatctacatatcaaaattgaagaggttaataattaaatagacctgtggttatcaaaacaacacagttacatatatatacatt |
38326760 |
T |
|
| Q |
122 |
caaattc------cataaattaccattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttg |
215 |
Q |
| |
|
||||| |||||| |||||||| | |||||||||| |||||| ||| |||||| ||||| | |||||||||||| |||| |||| | ||||| |
|
|
| T |
38326759 |
aaaatttaaattacataaagtaccattgctgacaaaattgtacaaccaactgcaagtacagattctggcttccacattcataggcagcataaggtcttta |
38326660 |
T |
|
| Q |
216 |
tacttgttaaagacgcatgagcccatgcaaaactcaaaatcggaagcgacggtggtaatggg |
277 |
Q |
| |
|
||||| | ||| |||| || ||||||||||| || ||||| || ||||| |||| |||||| |
|
|
| T |
38326659 |
tacttttcaaatacgcgtgcacccatgcaaaattccaaatcagatgcgacagtggcaatggg |
38326598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 38849411 - 38849524
Alignment:
| Q |
149 |
aaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttgtacttgttaaagacgcatgagcccatgcaaaac |
248 |
Q |
| |
|
|||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |
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|
| T |
38849411 |
aaaattgtacaaccaactgcgagtacaaattctagcttccacattcatcggcaacatacgatctttatacttgttaaagacacgtgagcccatgcaaaat |
38849510 |
T |
|
| Q |
249 |
tcaaaatcggaagc |
262 |
Q |
| |
|
||| |||| ||||| |
|
|
| T |
38849511 |
tcagaatcagaagc |
38849524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 38849279 - 38849314
Alignment:
| Q |
27 |
tcatcatcttctccatctacatatcataattgaaga |
62 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38849279 |
tcatcgtcttctccatctacatatcataattgaaga |
38849314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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