View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21678_high_13 (Length: 303)
Name: NF21678_high_13
Description: NF21678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21678_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 6 - 302
Target Start/End: Complemental strand, 7415782 - 7415486
Alignment:
| Q |
6 |
gtttggtgttaaagttgaaatcttttcacaacttcatagtaagtcgtcgtcataaatttaaattttgattcaagtatatgttcaaaagttgttctcaaaa |
105 |
Q |
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| T |
7415782 |
gtttgatgttaaagttgaaatcttttcacaacttcatagtaagtcgtcgtcataaatttaaatttcgattcaagtatatgttcaaaagttgttctcaaaa |
7415683 |
T |
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| Q |
106 |
tataaacttttaacttattttgttatatttaatggaatgatatttaaaaatatgccttgatttatacacacaccagatcaatcttaacatcaagtttgtg |
205 |
Q |
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| T |
7415682 |
tataaacttttaacttattttgttatatttaatggaatgatatttaaaaatatgccttgatttatacacacaccagatcaatcttaacatcaagtttgtg |
7415583 |
T |
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| Q |
206 |
cttatattttttgcagactaatcaactgctgaagactcacactttgaatgatcggatgctacataaaaatacatttgcaacaatggaattatccatt |
302 |
Q |
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| T |
7415582 |
cttatattttttgcagactaatcaactgctgaagactcacactttgaatgatcggatgctacataaaaatacatttgcaacaatggaattatccatt |
7415486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 32219879 - 32219649
Alignment:
| Q |
12 |
tgttaaagttgaaatcttttcacaacttcatagtaagtcgtcgtcataaattta-aattttgattcaagtatatgttcaaaagttgttctcaaaatataa |
110 |
Q |
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| T |
32219879 |
tgttaaagttgaaatcttttcacaactttatagttagttatcatcataaatttatactttcgattcatgtata---taaaaacttgttctcaaaatccaa |
32219783 |
T |
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| Q |
111 |
acttttaactta-ttttgttatatttaatggaatgatatttaaaaatatgccttgatttatac------acacaccagatcaatcttaacatcaagtttg |
203 |
Q |
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| T |
32219782 |
tcttttaacttattttttttctatttatttgaatgatatttaaaa--atgctatgatttatacacacatacacaccagatcaagtttaacttcaactttg |
32219685 |
T |
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| Q |
204 |
tgcttatattttttgcagactaatcaactgctgaag |
239 |
Q |
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| T |
32219684 |
tgtttatattttttacagtctaatcaactgctgaag |
32219649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 32232358 - 32232193
Alignment:
| Q |
8 |
ttggtgttaaagttgaaatcttttcacaacttcatagtaagtcgtcgtcataaattta-aattttgattcaagtatatgttcaaaagttgttctcaaaat |
106 |
Q |
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| T |
32232358 |
ttggtgttaaagttgaaatcttttcacaacttcatagtaagtcatcatcataaatttatactttaaattcatgtata---taaaaacttgttctcaaaat |
32232262 |
T |
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| Q |
107 |
ataaacttttaacttattttgttatatttaatggaatgatatttaaaaatatgccttgatttatacacaca |
177 |
Q |
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| T |
32232261 |
ccaatctaataacttttttttttctatttaattgaatgatatttaaaa--atgccatgatttatacacaca |
32232193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 14166341 - 14166086
Alignment:
| Q |
7 |
tttggtgttaaagttgaaatcttttcacaacttcatagtaagtc-gtcgtcataaattta-aattttgattcaagtatatgttcaaaagttgttctcaaa |
104 |
Q |
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| T |
14166341 |
tttggtgttaacgttgaaatcttttcacaacttcatagtaactcggttgtcataaatttacactttcgaatcatgtata---taaaaatttgttctcaga |
14166245 |
T |
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| Q |
105 |
atataaacttttaacttattttgttatatttaatggaatgatatttaaaaatatgccttgatttatacacac--accagatcaatcttaacatcaagttt |
202 |
Q |
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||| ||| |||||| ||||||| || ||||||| ||| ||||||||||| | | |||| ||||||||| | ||||||||||||||| ||| |||| |
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| T |
14166244 |
atacaaaattttaaattatttttttcaatttaattgaaagatatttaaaa--tttctatgatgtatacacacggatcagatcaatcttaacttcatgttt |
14166147 |
T |
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| Q |
203 |
gtgcttatatttt-----ttgcagactaatcaactgctgaagactcacactttgaatgatc |
258 |
Q |
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| T |
14166146 |
atgtttgtattttttttctttcaaactattcaactacggaagactcacactttgaatgatc |
14166086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 8855349 - 8855290
Alignment:
| Q |
201 |
ttgtgcttatattttttgcagactaatcaactgctgaagactcacactttgaatgatcgg |
260 |
Q |
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| T |
8855349 |
ttgtgtttatattttttgcagacgaaccaactgctgaagactctcacattgcataatcgg |
8855290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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