View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21678_high_2 (Length: 368)
Name: NF21678_high_2
Description: NF21678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21678_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 8087278 - 8086926
Alignment:
| Q |
1 |
acagacacttccatctcatcattatttttatttttctctgccttaccagctgaacaaaccgatcccatttttgtnnnnnnnnttcaaaacctgcacaaat |
100 |
Q |
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| T |
8087278 |
acagacacttccatctcatcattatttttatttttctctgccttaccagctgaacaaaccgatcccatttt-gtaaaaaaa-ttcaaaacctgcacaaat |
8087181 |
T |
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| Q |
101 |
tcgtataatatatattatagagtaactttataacaattttaagtctaagaagaaaaa-taaagaccaactgaatttggttgaaatgaaagaaataacacg |
199 |
Q |
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| T |
8087180 |
tcgtataatatatactatagagtaactttataacaattttaagtctaagaagaaaaaataaagaccaactgaatttggttgaaatgaaagaaataacacg |
8087081 |
T |
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| Q |
200 |
ttgatgacatgcatatcttatcttatgatatgatatgaattgaattgagaccaaaaatgttgaaggagttaggagcatgtatgtatgtgtgtacctgctt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
8087080 |
ttgatgacatgcatatcttatcttatgatatgatatgaattga-----gaccaaaaatgttgaaggagtttggagcatgtatgtatgtttgtacctgctt |
8086986 |
T |
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| Q |
300 |
agtgtttatttagaagagagtagtatcaaagtccaaaacggaaattcagttaagaattat |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8086985 |
agtgtttatttagaagagagtagtatcaaagtccaaaacggaaattcagttaagaattat |
8086926 |
T |
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