View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21678_high_3 (Length: 352)
Name: NF21678_high_3
Description: NF21678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21678_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 965896 - 966241
Alignment:
| Q |
1 |
acaagcatccatctgaagaactgtacgttagatagttgatcaaagtaaatgtctttcaagtgtagggttttgagtgagggaaagtttgaaatagaatcaa |
100 |
Q |
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| T |
965896 |
acaagcatccatctgaagaactgtacgttagatagttgatcaaagtaaatgtctttcaagtgtagggttttgagcgagggaaagtttgaaatagaatcaa |
965995 |
T |
|
| Q |
101 |
aagtcttagacgacacccgatggagtttgagaataacgagggttgtaaggttacttataggcaatttagggattggcgcgtcagcaaagaagtattcaat |
200 |
Q |
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| T |
965996 |
aagtcttagacgacacccgatggagtttgagaacaacaagggttgtaaggtcacttataggcaatttagggattggcgcgtcagcaaagaagtattcaat |
966095 |
T |
|
| Q |
201 |
gtggaggatgaaagtgttgatggaataattgccggctgcttctcgtgagcgcaagacggagcagacaaatttgtggaagcataaaacggattcttggcct |
300 |
Q |
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| T |
966096 |
gtggaggatgaaagtgttgatggaataattgccggctgcttctcgtgagtgcaagacggagcagacaaatttgtggaagcataaaacggattcttggcct |
966195 |
T |
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| Q |
301 |
tccaatttcctttcggtgaagttgagaacgggagcgtaacaccaaa |
346 |
Q |
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| T |
966196 |
tccaatttcctttcggtgaagttgagaacgggagcgtaacaccaaa |
966241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 958314 - 958374
Alignment:
| Q |
73 |
agtgagggaaagtttgaaatagaatcaaaagtcttagacgacacccgatggagtttgagaa |
133 |
Q |
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| T |
958314 |
agtgagggacagtttgaaatagaatcaaaagtcttacacgacacctgaaggagcttgagaa |
958374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 975461 - 975540
Alignment:
| Q |
192 |
gtattcaatgtggaggatgaaagtgttgatggaataattgccggctgcttctcgtgagcgcaagacggagcagacaaatt |
271 |
Q |
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| T |
975461 |
gtattcaatgtcaaggatgaaagtgttgatggaatgattaccagcagcttctcgtgagtacaagacggagaagacgaatt |
975540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 346
Target Start/End: Complemental strand, 1398897 - 1398755
Alignment:
| Q |
204 |
gaggatgaaagtgttgatggaataattgccggctgcttctcgtgagcgcaagacggagcagacaaatttgtggaagcataaaacggattcttggccttcc |
303 |
Q |
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| T |
1398897 |
gaggatgaaagtgttgatggaatgattacctgcggcttttcgcgagagcaagacggaagagacgaattccttgaagcggcgaatggattctaggtcttcc |
1398798 |
T |
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| Q |
304 |
aatttcctttcggtgaagttgagaacgggagcgtaacaccaaa |
346 |
Q |
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|| || |||||||||||| |||||||||| |||||| ||||| |
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| T |
1398797 |
aagttggtttcggtgaagtcgagaacgggaacgtaacgccaaa |
1398755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 958405 - 958438
Alignment:
| Q |
247 |
gagcgcaagacggagcagacaaatttgtggaagc |
280 |
Q |
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| T |
958405 |
gagcgcaagacggagcagacaaatttgtggaagc |
958438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 975186 - 975229
Alignment:
| Q |
37 |
tgatcaaagtaaatgtctttcaagtgtagggttttgagtgaggg |
80 |
Q |
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| T |
975186 |
tgatcaaagtaaatctctttcaaatgtagggtttttagtgaggg |
975229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 409660 - 409607
Alignment:
| Q |
30 |
agatagttgatcaaagtaaatgtctttcaagtgtagggttttgagtgagggaaa |
83 |
Q |
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|||| |||||| ||||| | ||||||||| ||||||||||||||||||||||| |
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| T |
409660 |
agattgttgatggaagtagaagtctttcaaatgtagggttttgagtgagggaaa |
409607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 997310 - 997363
Alignment:
| Q |
192 |
gtattcaatgtggaggatgaaagtgttgatggaataattgccggctgcttctcg |
245 |
Q |
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| T |
997310 |
gtattcaatgtagaggacgaaagtgttgatggaatgattaccagcggcttctcg |
997363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 1402822 - 1402785
Alignment:
| Q |
46 |
taaatgtctttcaagtgtagggttttgagtgagggaaa |
83 |
Q |
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| T |
1402822 |
taaatgtctttcaaatgtagtgttttgagtgagggaaa |
1402785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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