View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21678_high_4 (Length: 347)

Name: NF21678_high_4
Description: NF21678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21678_high_4
NF21678_high_4
[»] scaffold0065 (6 HSPs)
scaffold0065 (14-170)||(49797-49953)
scaffold0065 (266-347)||(50120-50201)
scaffold0065 (189-347)||(44856-45032)
scaffold0065 (189-262)||(50003-50076)
scaffold0065 (134-175)||(44789-44830)
scaffold0065 (14-58)||(44701-44745)
[»] chr8 (11 HSPs)
chr8 (285-346)||(3142704-3142765)
chr8 (187-246)||(3174051-3174110)
chr8 (282-346)||(2711821-2711885)
chr8 (188-266)||(2978920-2978998)
chr8 (289-342)||(2988861-2988914)
chr8 (188-251)||(3142850-3142913)
chr8 (188-251)||(3161804-3161867)
chr8 (188-246)||(13790633-13790691)
chr8 (190-246)||(3283187-3283243)
chr8 (301-340)||(2911672-2911711)
chr8 (282-346)||(2979942-2980006)
[»] chr1 (2 HSPs)
chr1 (188-270)||(10756313-10756395)
chr1 (296-346)||(10756195-10756245)
[»] chr6 (1 HSPs)
chr6 (289-342)||(18355258-18355311)
[»] chr4 (1 HSPs)
chr4 (188-270)||(8572421-8572503)
[»] chr3 (1 HSPs)
chr3 (188-270)||(28698381-28698463)
[»] chr7 (1 HSPs)
chr7 (301-346)||(3919690-3919735)


Alignment Details
Target: scaffold0065 (Bit Score: 133; Significance: 4e-69; HSPs: 6)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 49797 - 49953
Alignment:
Q  14 agacagggccatgtgatctttcccactattggtcaattaacttaatcatttttctaagacgtaattacattttagtcctatccaatggttaatatgtatg 113  Q
    |||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  49797 agacagtgccatgtgatctttcccactattggtcaattaacttgataatttttctaagacgtaattacatttttttcctatccaatggttaatatgtatg 49896  T
Q  114 tatactaccaagagtataccatgcttttcctactctcaaactgatcactctgcaact 170  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49897 tatattaccaagagtataccatgcttttcctactctcaaactgatcactctgcaact 49953  T

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Target: scaffold0065; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 50120 - 50201
Alignment:
Q  266 tatcatacacacttggttgtatgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattc 347  Q
    |||||||||||||| ||  ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||    
T  50120 tatcatacacacttagtaatatgctgaatattttcttttgaccggttggcttctgctgcttttcgtgaatttggacggattc 50201  T

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Target: scaffold0065; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 189 - 347
Target Start/End: Original strand, 44856 - 45032
Alignment:
Q  189 ttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaacactt------------------tatca 270  Q
    |||||||  ||||| || ||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||                  |||||    
T  44856 ttttgaagaatggctgaacaaatcccatatgctgttgctgctagcctcattaacaggttagttcattttcatcacttcatatatgcgtacatatatatca 44955  T
Q  271 tacacacttggttg-tatgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattc 347  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||||||||| || |||| ||| |||||||||||||    
T  44956 tacacacttagttggtatgctgaatattttcttttg-caggttggcttctgcagcttttcatgagtttggacggattc 45032  T

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Target: scaffold0065; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 50003 - 50076
Alignment:
Q  189 ttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaaca 262  Q
    ||||||||||||||  | ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  50003 ttttgaaagatggctaaacaaatcccatatgctgttgctgctagcctcattaacaggttacttaattttcaaca 50076  T

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Target: scaffold0065; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 44789 - 44830
Alignment:
Q  134 atgcttttcctactctcaaactgatcactctgcaactttcaa 175  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44789 atgcttttcctactctcaaactgatcactctgcaactttcaa 44830  T

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Target: scaffold0065; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 44701 - 44745
Alignment:
Q  14 agacagggccatgtgatctttcccactattggtcaattaacttaa 58  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||    
T  44701 agacagggccatgtgatcttgcccactattggtcaattaaattaa 44745  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 3142765 - 3142704
Alignment:
Q  285 tatgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggatt 346  Q
    ||||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  3142765 tatgctggaaattttcttttgtcaggttggcttcagcggcctttcgtgaatttggacggatt 3142704  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 3174110 - 3174051
Alignment:
Q  187 atttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggt 246  Q
    |||||||||  ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  3174110 atttttgaagaatggctgagcaaattccatatgctgttgctgcaagtctcattaacaggt 3174051  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 2711885 - 2711821
Alignment:
Q  282 ttgtatgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggatt 346  Q
    |||| |||| |||||||||| ||  |||||||||||||||||||||||||||| |||||||||||    
T  2711885 ttgtttgctaaatattttctgttcgcaggttggcttctgcggcctttcgtgaacttggacggatt 2711821  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 2978920 - 2978998
Alignment:
Q  188 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaacacttt 266  Q
    |||||||| |||||| || |||||||||||   ||||||| | |||||| ||||||||| |||||||||||||||||||    
T  2978920 tttttgaaggatggctgaacaaattccatacagtgttgctacaagtctcgttaacaggtgacttcattttcaacacttt 2978998  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 2988861 - 2988914
Alignment:
Q  289 ctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacg 342  Q
    ||||||||||||| || | |||||||||||||| ||||||||||||||||||||    
T  2988861 ctgaatattttctcttcataggttggcttctgcagcctttcgtgaatttggacg 2988914  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 3142913 - 3142850
Alignment:
Q  188 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttactt 251  Q
    |||||||| |||||| || |||||||| |||||||||||||| || ||| ||||||||||||||    
T  3142913 tttttgaaggatggctgaacaaattccttatgctgttgctgcaagcctcgttaacaggttactt 3142850  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 3161867 - 3161804
Alignment:
Q  188 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttactt 251  Q
    |||||||| |||||| || |||||||| |||||||||||||| || ||| ||||||||||||||    
T  3161867 tttttgaaggatggctgaacaaattccttatgctgttgctgcaagcctcgttaacaggttactt 3161804  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 13790633 - 13790691
Alignment:
Q  188 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggt 246  Q
    |||||||| |||||| |||||||||||||||||||||||||  || ||| |||||||||    
T  13790633 tttttgaaggatggctgagcaaattccatatgctgttgctgaaagcctctttaacaggt 13790691  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 3283243 - 3283187
Alignment:
Q  190 tttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggt 246  Q
    |||||| ||||||||||||||||||||| ||||||||||  || ||| |||||||||    
T  3283243 tttgaaggatggccgagcaaattccatacgctgttgctgaaagcctctttaacaggt 3283187  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 2911711 - 2911672
Alignment:
Q  301 ttttgacaggttggcttctgcggcctttcgtgaatttgga 340  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  2911711 ttttgacaggttggcatctgcggcctttcgtgagtttgga 2911672  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 2979942 - 2980006
Alignment:
Q  282 ttgtatgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggatt 346  Q
    |||| |||||||||||||||||    |||||||||||||  ||||| || |||||||||||||||    
T  2979942 ttgtttgctgaatattttctttacgtaggttggcttctgttgccttacgcgaatttggacggatt 2980006  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 10756395 - 10756313
Alignment:
Q  188 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaacactttatca 270  Q
    ||||||||||||||| || ||||||||||| | |||||||   || ||||||||| ||||| |||||||||||| ||||||||    
T  10756395 tttttgaaagatggctgaacaaattccatacggtgttgctcaaagcctcattaacgggttaattcattttcaaccctttatca 10756313  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 10756245 - 10756195
Alignment:
Q  296 ttttcttttgacaggttggcttctgcggcctttcgtgaatttggacggatt 346  Q
    ||||||||| | |||||||||||||  ||||| ||||||||||||||||||    
T  10756245 ttttcttttcataggttggcttctgttgccttacgtgaatttggacggatt 10756195  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 18355258 - 18355311
Alignment:
Q  289 ctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacg 342  Q
    ||||||||||||| || | |||||||||||||| |||||||||||| |||||||    
T  18355258 ctgaatattttctcttcataggttggcttctgcagcctttcgtgaaattggacg 18355311  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 8572421 - 8572503
Alignment:
Q  188 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaacactttatca 270  Q
    |||||||| |||||| || ||||||||| | | |||||||   || ||||||||| ||||| |||||||||||| ||||||||    
T  8572421 tttttgaaggatggctgaacaaattccacacggtgttgctcaaagcctcattaacgggttaattcattttcaaccctttatca 8572503  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 28698381 - 28698463
Alignment:
Q  188 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaacactttatca 270  Q
    |||||||| |||||| || ||||||||| | | |||||||   || ||||||||| ||||| |||||||||||| ||||||||    
T  28698381 tttttgaaggatggctgaacaaattccacacggtgttgctcaaagcctcattaacgggttaattcattttcaaccctttatca 28698463  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 3919735 - 3919690
Alignment:
Q  301 ttttgacaggttggcttctgcggcctttcgtgaatttggacggatt 346  Q
    |||| |||||||||||||||| || |||||||||||||| ||||||    
T  3919735 tttttacaggttggcttctgcagcgtttcgtgaatttgggcggatt 3919690  T

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