View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21678_high_5 (Length: 343)

Name: NF21678_high_5
Description: NF21678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21678_high_5
NF21678_high_5
[»] chr1 (3 HSPs)
chr1 (1-83)||(39216681-39216763)
chr1 (260-337)||(39216934-39217011)
chr1 (111-159)||(39216791-39216839)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 39216681 - 39216763
Alignment:
Q  1 aaaaacagtgtttaagctcagttacacaataatctattcaaaagatcacaaggatacggaaattgaaacaagcaataaatttg 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39216681 aaaaacagtgtttaagctcagttacacaataatctattcaaaagatcacaaggatacggaaattgaaacaagcaataaatttg 39216763  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 39216934 - 39217011
Alignment:
Q  260 gatgctgaacctcgctgaggtaacgtttgtgagaacgaagattgtcgacataaacttcttcttcggggtctgtggtgc 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39216934 gatgctgaacctcgctgaggtaacgtttgtgagaacgaagattgtcgacataaacttcttcttcggggtctctggtgc 39217011  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 39216791 - 39216839
Alignment:
Q  111 tctatcctagattcacaataactgctaagtgggcaaatattgaaacctt 159  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39216791 tctatcctagattcacaataactgctaagtgggtaaatattgaaacctt 39216839  T

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