View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21679_high_12 (Length: 358)
Name: NF21679_high_12
Description: NF21679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21679_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 4078405 - 4078051
Alignment:
| Q |
1 |
aaaacatagtttttcaacttcaatttcattgtcaatgcaaaacttaactccttccaaaacttaatctaattaaaatcataaattatcttgatgtctgctt |
100 |
Q |
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| T |
4078405 |
aaaacatagtttttcaacttcaatttcattgtcaatgcaaaacttaactccttccaaaacttaatctaattaaaatcataaataatcttgatgcctgctt |
4078306 |
T |
|
| Q |
101 |
cgttagggtggccaaaatgaga--aacaacacaccatccttcacattccctcagtttgggaggaattccaagaacttgagatgcaaatgatgcaaagtcc |
198 |
Q |
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| T |
4078305 |
tattagggtggccaaaatgagacaaacaacacaccatccttcacattccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtcc |
4078206 |
T |
|
| Q |
199 |
atatcctccctagttttttgcagtcgaacaaggcataaatttcatctattatccaatcaatctcacccttgttatgttccaccctcacttgtgtgaatat |
298 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4078205 |
atatcctccctagttttttggagtcgaacaaggcataaatttcatctattatccaatcaatctcacccttgttatgtgccaccctcacttgtgtgaatat |
4078106 |
T |
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| Q |
299 |
attctatgtgtcaaccattcctaaatcttcttctccactaatcatctctgctact |
353 |
Q |
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| T |
4078105 |
attctatgtgtcaaccattcctaaatcttcttctccactaatcatcactgctact |
4078051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 4101158 - 4100846
Alignment:
| Q |
1 |
aaaacatagtttttcaacttcaatttcattgtcaatgcaaaacttaactccttccaaaacttaatctaattaaaatcataaattatcttgatgtctgctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4101158 |
aaaacatagtttttcaacttcaatttcattgtcaatgcaaaacttaactccttccaaaacttaatctaattaaaatcataaattatcttgatgtctgctt |
4101059 |
T |
|
| Q |
101 |
cgttagggtggccaaaatgagaaacaacacaccatccttcacattccctcagtttgggaggaattccaagaacttgagatgcaaatgatgcaaagtccat |
200 |
Q |
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| T |
4101058 |
cgttagggtggccaaaatgagaaacaacacaccatccttcacattccctcagtttaggaggaattccaagaacttgagatacaaatgatgcaaagtccat |
4100959 |
T |
|
| Q |
201 |
atcctccctagttttttgcagtcgaacaaggcataaatttcatctattatccaatcaatctcacccttgttatgttccaccctcacttgtgtgaatatat |
300 |
Q |
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| T |
4100958 |
atcctccctagttttttgcagttgaacaaggcataaatttcatctattatccaatcaatctcacccttgttatgtgccaccctcacttgtgtgaatatat |
4100859 |
T |
|
| Q |
301 |
tctatgtgtcaac |
313 |
Q |
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|||| |||||||| |
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| T |
4100858 |
tctacgtgtcaac |
4100846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 13825352 - 13825292
Alignment:
| Q |
9 |
gtttttcaacttcaatttcattgtcaatgcaaaactt-aactccttccaaaacttaatcta |
68 |
Q |
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||||||||| || || || ||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
13825352 |
gtttttcaattttaagtttattatcaatgcaaaactttaactccttccaaaacttaatcta |
13825292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 4502620 - 4502677
Alignment:
| Q |
153 |
tttgggaggaattccaagaacttgagatgcaaatgatgcaaagtccatatcctcccta |
210 |
Q |
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| T |
4502620 |
tttgggaggaattccatgaactttaggtacaactgatgcggagtccatatcctcccta |
4502677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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