View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21679_high_13 (Length: 357)

Name: NF21679_high_13
Description: NF21679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21679_high_13
NF21679_high_13
[»] chr4 (9 HSPs)
chr4 (1-284)||(25201454-25201735)
chr4 (1-196)||(13957478-13957674)
chr4 (2-278)||(51758625-51758901)
chr4 (1-196)||(42511393-42511586)
chr4 (1-159)||(10142410-10142569)
chr4 (7-76)||(14192078-14192147)
chr4 (1-170)||(51337817-51337990)
chr4 (8-128)||(28143210-28143333)
chr4 (35-278)||(20151992-20152236)
[»] chr7 (13 HSPs)
chr7 (1-278)||(39038318-39038593)
chr7 (1-278)||(43178654-43178928)
chr7 (1-150)||(24441713-24441864)
chr7 (1-128)||(6195675-6195805)
chr7 (1-170)||(6189159-6189332)
chr7 (1-76)||(19311698-19311773)
chr7 (1-170)||(48636868-48637041)
chr7 (11-220)||(23305442-23305648)
chr7 (1-76)||(8069846-8069921)
chr7 (11-70)||(8113566-8113625)
chr7 (60-196)||(8113640-8113778)
chr7 (1-170)||(48238625-48238797)
chr7 (86-159)||(14573995-14574068)
[»] chr8 (12 HSPs)
chr8 (7-278)||(11648170-11648440)
chr8 (1-278)||(960735-961012)
chr8 (42-148)||(35824166-35824273)
chr8 (1-98)||(602182-602280)
chr8 (1-152)||(11994470-11994623)
chr8 (78-196)||(9381946-9382062)
chr8 (64-146)||(32073462-32073545)
chr8 (7-76)||(2878970-2879039)
chr8 (86-253)||(24683070-24683231)
chr8 (1-76)||(6927313-6927388)
chr8 (1-76)||(28509524-28509599)
chr8 (1-76)||(28516731-28516806)
[»] chr6 (7 HSPs)
chr6 (12-278)||(1830840-1831104)
chr6 (1-196)||(11680524-11680720)
chr6 (1-160)||(14677914-14678075)
chr6 (7-160)||(4064998-4065150)
chr6 (1-76)||(33516382-33516457)
chr6 (35-150)||(14679000-14679116)
chr6 (2-55)||(1831137-1831190)
[»] chr5 (8 HSPs)
chr5 (1-278)||(5120581-5120860)
chr5 (114-276)||(23318168-23318329)
chr5 (1-196)||(43171073-43171267)
chr5 (7-160)||(26402144-26402295)
chr5 (1-160)||(14651496-14651656)
chr5 (1-170)||(7850480-7850653)
chr5 (199-278)||(33922247-33922326)
chr5 (1-76)||(38491310-38491385)
[»] chr1 (12 HSPs)
chr1 (114-278)||(12783770-12783933)
chr1 (43-260)||(47397224-47397437)
chr1 (1-148)||(12028035-12028182)
chr1 (11-148)||(5208454-5208592)
chr1 (7-112)||(48646236-48646342)
chr1 (1-170)||(36296868-36297041)
chr1 (1-170)||(42722403-42722576)
chr1 (7-76)||(26221954-26222023)
chr1 (1-128)||(28945567-28945697)
chr1 (7-77)||(49228403-49228473)
chr1 (7-112)||(35501355-35501460)
chr1 (78-125)||(12783628-12783675)
[»] chr3 (6 HSPs)
chr3 (2-196)||(47185206-47185401)
chr3 (7-76)||(6024518-6024587)
chr3 (1-170)||(23044652-23044825)
chr3 (1-128)||(31884712-31884842)
chr3 (77-130)||(44879476-44879529)
chr3 (1-70)||(44879802-44879871)
[»] chr2 (17 HSPs)
chr2 (1-196)||(25621679-25621875)
chr2 (105-278)||(6883442-6883607)
chr2 (11-196)||(14904265-14904451)
chr2 (166-274)||(25415782-25415890)
chr2 (7-278)||(38422322-38422594)
chr2 (47-215)||(43672737-43672906)
chr2 (1-160)||(90087-90248)
chr2 (7-76)||(2565866-2565935)
chr2 (7-76)||(18780937-18781006)
chr2 (1-128)||(19678245-19678375)
chr2 (1-76)||(6271362-6271437)
chr2 (1-170)||(29303342-29303515)
chr2 (174-278)||(10023316-10023418)
chr2 (1-76)||(45277258-45277333)
chr2 (1-76)||(7880115-7880190)
chr2 (11-80)||(25415498-25415567)
chr2 (7-57)||(6883603-6883653)
[»] scaffold0385 (1 HSPs)
scaffold0385 (2-113)||(903-1015)
[»] scaffold0178 (1 HSPs)
scaffold0178 (107-196)||(1015-1104)
[»] scaffold0743 (1 HSPs)
scaffold0743 (7-72)||(2570-2635)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 25201735 - 25201454
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttag 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  25201735 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatatttgatacaaaattagtgttagactttttag 25201636  T
Q  100 agaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaa 199  Q
    |||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25201635 agaaatcataaatgcaagaactcctttgtatgtaagaagtacatcattcctctctttatataccataagtatttctaacaagtccattatgatgataaaa 25201536  T
Q  200 aattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttttttgtc 284  Q
    ||| ||||||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||    
T  25201535 aatcaatattagactgttgttaaaagtgtactttct---atgaattttagcacacttgataacttatatcaataatttttttgtc 25201454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 13957674 - 13957478
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttag 99  Q
    ||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||  ||||||| ||||||||| |||| |||||| |||||||    
T  13957674 cgtaattaactaaattttaaacttttggatgcaaaattcttcaatgttaaactcataacaatgataatacatgatacaaaattagtgttagagtttttag 13957575  T
Q  100 agaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgata 196  Q
    | ||||||||||| |||||| || ||||||| ||||||||||||||||||||| ||||||| | |||||||| ||||||||||||||||||||||||    
T  13957574 ataaatcatagatacaagaagtcatttgtatactagaagtacatcattcctctttttatatgctataagtatctctaacaagttcattatgatgata 13957478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 2 - 278
Target Start/End: Complemental strand, 51758901 - 51758625
Alignment:
Q  2 gtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaa-ctcataacaacaataatacttgatacaaa-ttagagttagactttttag 99  Q
    |||| |||||||| ||||||||||| |||  |||| ||  |||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  51758901 gtaattaattaaaatttaaacttttggatggaaaagtcggcaatgttaaaactcataacaacaataatacatgatacaaaattagtgttagactttttag 51758802  T
Q  100 agaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaa 199  Q
    || ||||  |||| ||||||||||||||| |||| ||||||||||||||| || |||||||   |||||||| | ||||||||| |||| ||||||| ||    
T  51758801 agtaatctaagatacaagaactcctttgtttgcttgaagtacatcattccgctttttatatgatataagtatctttaacaagtttattacgatgatacaa 51758702  T
Q  200 aattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 278  Q
    ||||||| ||||||  | |||||| |||||| ||| ||| |||||||||||||||||||||||||| ||||| ||||||    
T  51758701 aattaatgttagac--tagttaaaggtgtaccttcaatggtgaattttagcacacttaataacttacatcaacaatttt 51758625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 42511393 - 42511586
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttag 99  Q
    ||||| ||| ||||||||||||| |||||| |||| |||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||  ||||||||    
T  42511393 cgtaattaactaaattttaaactcttagatgcaaa-ttctccaatgttaaactcataacaacaataatacatgatacaaaattagtgtta--ctttttag 42511489  T
Q  100 agaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgata 196  Q
    |  |||||||||  ||||||||| ||||||| ||||||||||||||||||||| |||||||   | |||||| ||||||||||||||||| ||||||    
T  42511490 aagaatcatagacacaagaactcttttgtatactagaagtacatcattcctctttttatatgttagaagtatctctaacaagttcattataatgata 42511586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 10142569 - 10142410
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagactttttag 99  Q
    ||||| ||| ||||||||||||||||  || ||||||||| |||||||||||| |||||||||||||||| |||||| ||||||| |||||||||||||     
T  10142569 cgtaattaactaaattttaaacttttgaatgcaaaattctccaatgttaaactaataacaacaataatacatgatacaaaattagtgttagactttttaa 10142470  T
Q  100 agaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttata 159  Q
    || |||||||||| || |||||||||||||| ||||| |||||| |||||||| ||||||    
T  10142469 aggaatcatagatacatgaactcctttgtatactagatgtacatgattcctctttttata 10142410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 14192078 - 14192147
Alignment:
Q  7 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 76  Q
    ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14192078 taattaaattttagacatttggatacaaaattctccaatgttaaactcataacaacaataatacttgata 14192147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 51337990 - 51337817
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttagacttttt 97  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| |||| | |||||    
T  51337990 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaaatttttt 51337891  T
Q  98 agagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 170  Q
    |||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  51337890 agagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 51337817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 28143210 - 28143333
Alignment:
Q  8 aattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttagactttttagagaaa 104  Q
    |||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| |||| | ||||||||| ||    
T  28143210 aattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaaattttttagagtaa 28143309  T
Q  105 tcatagatgcaagaactcctttgt 128  Q
    ||  |||| ||| ||||| |||||    
T  28143310 tctaagatacaataactcatttgt 28143333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 278
Target Start/End: Original strand, 20151992 - 20152236
Alignment:
Q  35 aattcttcaatgttaaactcataacaacaataatacttgatacaaattaga-gttagactttttagagaaatcatagatgcaagaactcctttgtatgct 133  Q
    |||||| |||| |||||| ||||||||||| |||| ||||||||||    | |||| ||||||||||| ||| | | |||||||||||||||| || | |    
T  20151992 aattctccaatattaaacccataacaacaacaatagttgatacaaaaccaatgttaaactttttagaggaataaaaaatgcaagaactcctttataagtt 20152091  T
Q  134 agaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatattagactgttgttaaaagtgtacttt 233  Q
    | ||||| ||||||| ||| |||||||   | |||||| |||| |||||| ||| |||| ||| || || | | ||||| ||||||||| ||| |   |     
T  20152092 acaagtatatcattcatctttttatatgttacaagtatctctatcaagtttattttgattatataatatgagtgttagaatgttgttaatagtatgtctc 20152191  T
Q  234 ctatgatgaattttagcacacttaataacttatatcaataatttt 278  Q
    | |||| |||||| |||||||||| | ||||||||||||| ||||    
T  20152192 caatgaggaatttaagcacacttactcacttatatcaatactttt 20152236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 39038318 - 39038593
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttag 99  Q
    ||||| |||||||||||||||||||| |||  |||  ||  ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  39038318 cgtaattaattaaattttaaacttttggatggaaa--tcc-caatgttaaactcataacaacaataatacatgatacaaaattagtgttagactttttag 39038414  T
Q  100 agaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaa 199  Q
    || |||| || ||  || ||||||||||||||||||||||||||||||||||| |||||||   |||||||| ||||||||||| |||||||||||| ||    
T  39038415 aggaatcgtatatagaaaaactcctttgtatgctagaagtacatcattcctctttttatatgttataagtatctctaacaagtttattatgatgatacaa 39038514  T
Q  200 aattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 278  Q
    ||| ||| || || ||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||    
T  39038515 aatcaatgttggattgttgttaaaagtgtaccttcaatgatgaattttagcacacttaataatttatatcaataatttt 39038593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 43178654 - 43178928
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttag 99  Q
    ||||| |||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||   |||||| | ||||||| |||| ||||||||||||||    
T  43178654 cgtaattaattaaattttaaacttttggataaaaaaatctccaatgttaaactcataacaa---taatacat-atacaaaattagtgttagactttttag 43178749  T
Q  100 agaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaa 199  Q
    || ||||| | || |||||||||||||||||||||||||||||||||| |||| |||||||   |||||||| |||| ||| ||||||||||||||| ||    
T  43178750 aggaatcacaaatacaagaactcctttgtatgctagaagtacatcatttctctttttatatgatataagtatctctaccaaattcattatgatgatacaa 43178849  T
Q  200 aattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 278  Q
    ||| ||| ||||||| |||||||| |||||| ||| ||| | ||||||| |||||||||||||||||||||||| ||||    
T  43178850 aatcaatgttagactattgttaaatgtgtaccttcaatggttaattttaacacacttaataacttatatcaatactttt 43178928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 24441713 - 24441864
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgtt-aaactcataacaacaataatacttgatacaaa-ttagagttagacttttta 98  Q
    ||||| ||| |||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||| ||||||||| |||  |||| ||||||||    
T  24441713 cgtaattaaataaattttaaacttttggatgcaaaattcttcaatgtttaaactcaaaacaacaataatacatgatacaaaattattgttaaacttttta 24441812  T
Q  99 gagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcct 150  Q
    ||| |||||||||  ||||||||||||||||| ||||||||| |||||||||    
T  24441813 gaggaatcatagacacaagaactcctttgtatactagaagtatatcattcct 24441864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 6195675 - 6195805
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttagacttttt 97  Q
    ||||| |||||||||||||||| ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| |||| | |||||    
T  6195675 cgtaattaattaaattttaaacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaaatttttt 6195774  T
Q  98 agagaaatcatagatgcaagaactcctttgt 128  Q
    |||| ||||  |||| ||| ||||| |||||    
T  6195775 agagtaatctaagatacaataactcatttgt 6195805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 6189159 - 6189332
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttagacttttt 97  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| |||| | |||||    
T  6189159 cgtaattaattaaattttatacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaaatttttt 6189258  T
Q  98 agagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 170  Q
    |||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  6189259 agagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 6189332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 19311698 - 19311773
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 76  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  19311698 cgtaattaattaaattttagacattttgatacaaaattctccaatgttaaacccataacaacaataatacttgata 19311773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 48637041 - 48636868
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttagacttttt 97  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| |||| | |||||    
T  48637041 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaaatttttt 48636942  T
Q  98 agagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 170  Q
    |||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  48636941 agagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 48636868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 23305648 - 23305442
Alignment:
Q  11 taaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatactt--gata-caaattagagttagactttttagagaaatca 107  Q
    ||||||||| |||||| ||||||||||| | ||||||||||| |||||| ||||||||||||  ||||  |||| |  |||||||||||| ||| ||||     
T  23305648 taaattttagacttttggatacaaaattatccaatgttaaacccataactacaataatacttgcgatagaaaatcaaggttagacttttttgaggaatct 23305549  T
Q  108 tagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaata 207  Q
     |||| | ||||||| ||||||||||||||||| || |||||||| || |||| | | |||      || ||||||||||| |||| || ||||| |||     
T  23305548 aagatacgagaactcatttgtatgctagaagtagattattcctcttttaatatgctacaag------taccaagttcattacgatgttacaaaatcaatg 23305455  T
Q  208 ttagactgttgtt 220  Q
    |||||||||||||    
T  23305454 ttagactgttgtt 23305442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8069921 - 8069846
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 76  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  8069921 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgata 8069846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 8113566 - 8113625
Alignment:
Q  11 taaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatac 70  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  8113566 taaattttaaacttttggatgcaaaattctccaatgttaaactcataacaacaataatac 8113625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 60 - 196
Target Start/End: Original strand, 8113640 - 8113778
Alignment:
Q  60 aacaataatacttgatacaaa-ttagagttagacttttt-agagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctcttta 157  Q
    ||||||||||| ||||||||| |||| |||||||||||| |||| |||||| ||| |||||  ||||||||||  |||||||||||||||| |   ||||    
T  8113640 aacaataatacatgatacaaaattagtgttagacttttttagaggaatcatcgatacaagagttcctttgtatagtagaagtacatcattcttactttta 8113739  T
Q  158 tataccataagtatttctaacaagttcattatgatgata 196  Q
    |||   |||  ||| ||||||||||||||||||||||||    
T  8113740 tatgttatagatatctctaacaagttcattatgatgata 8113778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 48238797 - 48238625
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttagacttttt 97  Q
    ||||| ||||||||||||| || |||  |||||||||||| ||||||| ||| |||||||||||||||||||||||    ||||||| |||| | |||||    
T  48238797 cgtaattaattaaattttagacatttgaatacaaaattctccaatgtt-aacacataacaacaataatacttgataaacaaaattagtgttaaatttttt 48238699  T
Q  98 agagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 170  Q
    |||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  48238698 agagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 48238625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 14574068 - 14573995
Alignment:
Q  86 gttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttata 159  Q
    ||||||||||| |||| ||||| ||| |||||||||||||| || | || ||||||||||||| ||| ||||||    
T  14574068 gttagacttttcagaggaatcaaagaggcaagaactcctttatacgttacaagtacatcattcttctttttata 14573995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 7 - 278
Target Start/End: Original strand, 11648170 - 11648440
Alignment:
Q  7 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttagagaaat 105  Q
    |||||||||||||||||||| |||  ||||| || |||||||||||||||||||||||||| |  ||||||||| |||| ||| |||| ||||||| |||    
T  11648170 taattaaattttaaacttttggatgaaaaatactccaatgttaaactcataacaacaataaca--tgatacaaaattagtgtttgactctttagaggaat 11648267  T
Q  106 catagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaa 205  Q
    ||||||| ||| |||||||||||||||||||| |||||||||||||| |||||| || |||||||| ||||||||||||||||| |||||| ||||||||    
T  11648268 catagatacaataactcctttgtatgctagaaatacatcattcctctttttataaactataagtatctctaacaagttcattataatgatacaaaattaa 11648367  T
Q  206 tattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 278  Q
    | ||||||| |||||||| |||||  ||| ||| || |||| ||||||||||||||||||||| |||| ||||    
T  11648368 tgttagactattgttaaatgtgtaacttcaatggtgtatttaagcacacttaataacttatattaatagtttt 11648440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 960735 - 961012
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttaga-cttttta 98  Q
    ||||| |||||||| ||||||||||| ||| |||||||||  |||||||||||||| ||||||| ||||| || | | ||||||  ||||||  ||||||    
T  960735 cgtaattaattaaaatttaaactttttgatgcaaaattctctaatgttaaactcatcacaacaagaatacatggtgcaaaattaatgttagattttttta 960834  T
Q  99 gagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaa 198  Q
    ||| |||||||||| ||||||||| ||||||||||| ||||  ||||||||||| |||||||   ||||  ||  ||||||||||||||||||||||| |    
T  960835 gaggaatcatagatacaagaactcatttgtatgctataagt--atcattcctctttttatatgttataaacatagctaacaagttcattatgatgataca 960932  T
Q  199 aaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 278  Q
    |||||||| || || ||||||||||||||| | ||| ||| | |||||||||||||||||||||||||||||||||||||    
T  960933 aaattaatgttggattgttgttaaaagtgtgccttcaatggtcaattttagcacacttaataacttatatcaataatttt 961012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 35824273 - 35824166
Alignment:
Q  42 caatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagta 140  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| |||| ||||||||||| ||||||||||  ||||| |||||||||| | |||||||    
T  35824273 caatgttaaactcataacaacaataatacatgatacaaaattagtgttaaactttttagaggaatcatagataaaagaaatcctttgtataccagaagta 35824174  T
Q  141 catcattc 148  Q
    ||||||||    
T  35824173 catcattc 35824166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 602182 - 602280
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagacttttta 98  Q
    ||||| |||||||||||||||||||| |||  ||||||||  |||||||||||||||||||||||||||| ||| || ||||||| |||||||||||||    
T  602182 cgtaattaattaaattttaaacttttggatggaaaattctaaaatgttaaactcataacaacaataatacatgacacaaaattagtgttagacttttta 602280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 11994470 - 11994623
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaatta--gagttagacttttta 98  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||  |  | |||| | ||||||    
T  11994470 cgtaattaattaaattttagacattttgatacaaaattctccaatgttaaacccataacaacaataatacttgataaaaaaaaatgtgttaaaattttta 11994569  T
Q  99 gagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctct 152  Q
    ||| ||||  |||| ||| ||||| ||||||| ||| || || |||||||||||    
T  11994570 gagtaatctaagatacaataactcatttgtatactacaaataaatcattcctct 11994623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 78 - 196
Target Start/End: Original strand, 9381946 - 9382062
Alignment:
Q  78 aaattagagttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaa 177  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||| |||||||  |||||||||||||||| | | ||||||| | | | |||   ||||    
T  9381946 aaattagtgttagactttttagaggaatcatagatacaagaactcttttgtatattagaagtacatcattcttatttttatatgctacaggta--gctaa 9382043  T
Q  178 caagttcattatgatgata 196  Q
    |||||||||||||||||||    
T  9382044 caagttcattatgatgata 9382062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 32073545 - 32073462
Alignment:
Q  64 ataatacttgatacaaa-ttagagttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcat 146  Q
    |||||||  |||||||| ||||||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||||    
T  32073545 ataatacaagatacaaagttagagttagactttttagaggaatcatagatacaaaaactcatttgtatgctagaagtacatcat 32073462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 2878970 - 2879039
Alignment:
Q  7 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 76  Q
    ||||||||||||| || ||| ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  2878970 taattaaattttagacatttggatacaaaattctccaatattaaactcataacaacaataatacttgata 2879039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 86 - 253
Target Start/End: Complemental strand, 24683231 - 24683070
Alignment:
Q  86 gttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttca 185  Q
    |||||||||||||||| ||||  |||| ||||||||| ||||||||||| ||||| ||||||||||| ||||||| | | ||       || |||||| |    
T  24683231 gttagactttttagagtaatctaagatacaagaactcatttgtatgctacaagtaaatcattcctctttttatatgctacaa------ataccaagttta 24683138  T
Q  186 ttatgatgataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcaca 253  Q
    ||||||| ||| ||||| ||| |||||||||||||||  |||||| | | ||| ||||||||||||||    
T  24683137 ttatgataatacaaaatcaatgttagactgttgttaactgtgtacctccaatggtgaattttagcaca 24683070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 6927313 - 6927388
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 76  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  6927313 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 6927388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 28509599 - 28509524
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 76  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  28509599 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 28509524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 28516806 - 28516731
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 76  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  28516806 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 28516731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 12 - 278
Target Start/End: Complemental strand, 1831104 - 1830840
Alignment:
Q  12 aaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttagagaaatcatag 110  Q
    ||||||||||||||| |||  |||||||| |||||||||||| |||||||   |||||| ||||||||| ||||  ||||||||||||||| |||||       
T  1831104 aaattttaaacttttggatggaaaattctccaatgttaaacttataacaa---taatacatgatacaaaattagttttagactttttagagtaatcaata 1831008  T
Q  111 atgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatatta 210  Q
    || ||||| |||||||||||||||||||| |||||||| ||| |||||||   ||||||||||||| ||||||||||||||||||| ||||| ||| |||    
T  1831007 atacaagagctcctttgtatgctagaagtgcatcattcatctttttatatgttataagtatttctagcaagttcattatgatgatacaaaatcaatgtta 1830908  T
Q  211 gactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 278  Q
     ||| |||||||| |||||||||| ||| | |||||||| ||||||||||||||||||||||||||||    
T  1830907 tactattgttaaatgtgtactttcaatggttaattttaggacacttaataacttatatcaataatttt 1830840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 11680524 - 11680720
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagactttttag 99  Q
    ||||| ||| ||||||||||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||||| ||||||  |||||||||||| |    
T  11680524 cgtaattaactaaattttaaagttttagatgcaaaattctccaatgttaaactcctaacaacaataatacttgatacaaaattattgttagacttttttg 11680623  T
Q  100 agaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgata 196  Q
    || |||| ||||   |  |||||| |  ||| |||||||||||||||| |||| ||||||| | |||||||| ||||||||||||||||||||||||    
T  11680624 aggaatcttagacagagtaactccataatatactagaagtacatcattactctttttatatgctataagtatctctaacaagttcattatgatgata 11680720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 14678075 - 14677914
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaatta--gagttagacttttta 98  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||  |  | |||||| ||||||    
T  14678075 cgtaattaattaaattttagacatttggatacaaaattctccaatgttaaacccataacaacaataatacttgataaaaaaaaatgtgttagaattttta 14677976  T
Q  99 gagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatat 160  Q
    ||| ||||  |||| ||| ||||| ||||||| ||| || || ||||||||||| |||||||    
T  14677975 gagtaatctaagatacaataactcatttgtatactacaaataaatcattcctctttttatat 14677914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 4064998 - 4065150
Alignment:
Q  7 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagactttttagagaaat 105  Q
    |||||||||||||  ||||| ||| || |||||| |||| |||||| |||| ||||||| ||||||||||| |||  || |||  ||||||||||| ||     
T  4064998 taattaaattttagccttttggatgcataattctccaatattaaacccatagcaacaattatacttgatacaaaaccagcgtt--actttttagaggaac 4065095  T
Q  106 catagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatat 160  Q
    || |||| ||||||||||||| |||| || ||| ||||||||||||  |||||||    
T  4065096 caaagatacaagaactcctttatatgttacaagaacatcattcctcattttatat 4065150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 33516382 - 33516457
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 76  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  33516382 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 33516457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 14679000 - 14679116
Alignment:
Q  35 aattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagactttttagagaaatcatagatgcaagaactcctttgtatgct 133  Q
    ||||||||||| |||||| ||| | |||||||||||||||||| ||| ||| |||| | ||||||||  ||||| |||||||| | ||| ||| |||| |    
T  14679000 aattcttcaatattaaacgcatgataacaataatacttgatacaaaactagtgttaaattttttagaagaatcagagatgcaaaatctcatttatatgtt 14679099  T
Q  134 agaagtacatcattcct 150  Q
    | |||| ||||||||||    
T  14679100 acaagtgcatcattcct 14679116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 1831190 - 1831137
Alignment:
Q  2 gtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactca 55  Q
    |||| |||||| ||||||||||||| |||  |||||||| ||||||||||||||    
T  1831190 gtaattaattatattttaaacttttggatcgaaaattctccaatgttaaactca 1831137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 6e-62; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 5120581 - 5120860
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttag 99  Q
    ||||| |||||||||||||||||||| |||  |||||||| ||||||||  || |||||||||||||||| ||||||||| |||| |||||| ||||||     
T  5120581 cgtaattaattaaattttaaacttttggatgaaaaattctccaatgtta--cttataacaacaataatacatgatacaaaattagtgttagagtttttaa 5120678  T
Q  100 agaaatcatagatgcaagaact---cctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgata 196  Q
    || |||||||||| ||||||||   | ||||||||||||||||||| ||||||||| |||||||   |||||||| ||||||||||||||||| ||||||    
T  5120679 aggaatcatagatacaagaactgatcatttgtatgctagaagtacaccattcctctttttatatgatataagtatctctaacaagttcattataatgata 5120778  T
Q  197 aaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 278  Q
     || || ||| ||| ||||||||||||||||||| ||| |   ||||||||||||||||| |||| ||||||||||||||||    
T  5120779 gaatatcaatgttaaactgttgttaaaagtgtaccttcaaatgtgaattttagcacacttgataatttatatcaataatttt 5120860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 114 - 276
Target Start/End: Original strand, 23318168 - 23318329
Alignment:
Q  114 caagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatattagac 213  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||| | |||||||||||||||||| ||| ||||| ||| |||       
T  23318168 caagaactcctt-gtatgttagaagtacatcattcctctttttatatactataagtatctttaacaagttcattatgattatacaaaatcaatgttatgt 23318266  T
Q  214 tgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatt 276  Q
    ||||||||||||||||| ||| ||| |||| |||| |||||||||||||||||||||||||||    
T  23318267 tgttgttaaaagtgtacattcaatggtgaaatttatcacacttaataacttatatcaataatt 23318329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 43171073 - 43171267
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttag 99  Q
    ||||| ||| |||||||||||||||| ||| ||||||||| ||||||||||||| |||||| |||||||| | ||||||| |||| |||||||||| |||    
T  43171073 cgtaattaactaaattttaaacttttggatgcaaaattctccaatgttaaactcgtaacaaaaataatacataatacaaaattagtgttagactttgtag 43171172  T
Q  100 agaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgata 196  Q
    || ||||||| || ||||||||||||||||  ||||||||||||||||||| | |||||||   ||| |||| ||||  ||||||||||||||||||    
T  43171173 aggaatcataaatacaagaactcctttgtacactagaagtacatcattcctttttttatatgttataggtatctcta--aagttcattatgatgata 43171267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 26402295 - 26402144
Alignment:
Q  7 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaa-attagagttagactttttagagaaat 105  Q
    |||||||||||||||||||| |||  |||||||| |||| ||||||||||   |  |||||||| |||||||| ||||| |||| |||||||||||||||    
T  26402295 taattaaattttaaacttttggatggaaaattctccaattttaaactcat---actaataatacatgatacaacattagtgttacactttttagagaaat 26402199  T
Q  106 catagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatat 160  Q
    ||||| | ||||||||||||||||| ||||||||| ||||||| ||| |||||||    
T  26402198 cataggtacaagaactcctttgtattctagaagtatatcattcttctttttatat 26402144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 14651496 - 14651656
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaatta-gagttagactttttag 99  Q
    ||||| ||||||||||||| || ||| ||||||||||||| |||| |||||| ||||||||||||||||||||||| |||  | | |||| | |||||||    
T  14651496 cgtaattaattaaattttagacatttggatacaaaattctccaattttaaacccataacaacaataatacttgataaaaaaaatgtgttaaattttttag 14651595  T
Q  100 agaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatat 160  Q
    || ||||  |||| ||| ||||| ||||||| ||| || || ||||||||||| |||||||    
T  14651596 agtaatctaagatacaataactcatttgtatactacaaataaatcattcctctttttatat 14651656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 7850653 - 7850480
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttagacttttt 97  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| |||| | |||||    
T  7850653 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaaatttttt 7850554  T
Q  98 agagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 170  Q
    |||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  7850553 agagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 7850480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 278
Target Start/End: Original strand, 33922247 - 33922326
Alignment:
Q  199 aaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 278  Q
    |||| ||| ||| |||||| |||||||||||| ||| |||||||||||||||||||||||| |||||| |||||||||||    
T  33922247 aaatcaattttaaactgttattaaaagtgtaccttcaatgatgaattttagcacacttaatcacttatgtcaataatttt 33922326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 38491385 - 38491310
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 76  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  38491385 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 38491310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 9e-55; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 114 - 278
Target Start/End: Original strand, 12783770 - 12783933
Alignment:
Q  114 caagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatattagac 213  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||| ||||| ||| ||||||    
T  12783770 caagaactcctt-gtatcctagaagtacatcattcctctttttatatgctataagtatctctaacaagttcattatgatgatacaaaatcaatgttagac 12783868  T
Q  214 tgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 278  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  12783869 tgttgttaaaagtgtaccttcaatgatgaattttaacacacttaataacttttatcaataatttt 12783933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 43 - 260
Target Start/End: Original strand, 47397224 - 47397437
Alignment:
Q  43 aatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtac 141  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||  ||| ||||||||||| ||||||| || ||| ||||||||| ||||||||||| ||    
T  47397224 aatgttaaactcataacaacaaaaatacatgatacaaaattagttttacactttttagaggaatcataaatacaataactcctttatatgctagaaggac 47397323  T
Q  142 atcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatattagactgttgttaaaagtgtactttctatgatg 241  Q
    ||||||||||||||||||| | |||||||| |||||||||||||     |||||| ||||| ||| |||||| |||||||||||||||| ||| ||| |     
T  47397324 atcattcctctctttatatgctataagtatctctaacaagttca-----atgatacaaaatcaatgttagacggttgttaaaagtgtaccttcaatggta 47397418  T
Q  242 aattttagcacacttaata 260  Q
    |||||||||||||||||||    
T  47397419 aattttagcacacttaata 47397437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 12028182 - 12028035
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagactttttag 99  Q
    ||||| ||| |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||||||| ||||||    
T  12028182 cgtaattaactaaattttaaacttttggatgcaaaattctccaatgttaaactcataacaacaataatacatgatacaaaattagtgttagac-ttttag 12028084  T
Q  100 agaaatcatagatgcaagaactcctttgtatgctagaagtacatcattc 148  Q
    || |||||||||| ||||||||||||||||| | |||| ||||||||||    
T  12028083 aggaatcatagatacaagaactcctttgtatacaagaaatacatcattc 12028035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 5208454 - 5208592
Alignment:
Q  11 taaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttagagaaatcata 109  Q
    |||||||||||||||| ||| ||||||||| |||||||| || |||||||||| |||||  ||||||||| |||| ||||||||||||||||||||||||    
T  5208454 taaattttaaacttttggatgcaaaattctacaatgttagacccataacaacagtaatatatgatacaaaattagtgttagactttttagagaaatcata 5208553  T
Q  110 gatgcaagaactcctttgtatgctagaagtacatcattc 148  Q
    ||| ||||||||| || |||| |||||||| ||||||||    
T  5208554 gatacaagaactcattcgtatactagaagtgcatcattc 5208592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 48646342 - 48646236
Alignment:
Q  7 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata-caaattagagttagactttttagagaaat 105  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||  ||||||| |||||| ||||||||| ||     
T  48646342 taattaaattttaaacatttagatgcaaaattcttcaatgttaaactcataacaacaataatacatgatataaaattagtgttagaatttttagaggaac 48646243  T
Q  106 catagat 112  Q
    |||||||    
T  48646242 catagat 48646236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 36297041 - 36296868
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttagacttttt 97  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| |||| | |||||    
T  36297041 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaaatttttt 36296942  T
Q  98 agagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 170  Q
    |||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  36296941 agagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 36296868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 42722576 - 42722403
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttagacttttt 97  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| |||| | |||||    
T  42722576 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaaatttttt 42722477  T
Q  98 agagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 170  Q
    |||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  42722476 agagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 42722403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 26222023 - 26221954
Alignment:
Q  7 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 76  Q
    ||||||||||||| || ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  26222023 taattaaattttagacatttggatacaaaattctccaatgttaaactcataaaaacaataatacttgata 26221954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 28945567 - 28945697
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttagacttttt 97  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| |||| | |||||    
T  28945567 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaaatttttt 28945666  T
Q  98 agagaaatcatagatgcaagaactcctttgt 128  Q
    |||| ||||  |||| ||| ||||| |||||    
T  28945667 agagtaatctaagatacaataactcatttgt 28945697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 49228403 - 49228473
Alignment:
Q  7 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac 77  Q
    |||||| |||||||||||||   |  |||||||| ||||||||||||||||||||||||||||| ||||||    
T  49228403 taattacattttaaacttttgattgaaaaattctccaatgttaaactcataacaacaataatacgtgatac 49228473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 35501355 - 35501460
Alignment:
Q  7 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaattagagttagactttttagagaaatc 106  Q
    |||||||||||||  |||||  |||||  ||||| ||||||||||| ||||||||  ||||||||||||| |||   | |||||||||||| ||||||||    
T  35501355 taattaaattttaggcttttgtatacatcattctccaatgttaaacccataacaattataatacttgataaaaaaatgtgttagactttttcgagaaatc 35501454  T
Q  107 atagat 112  Q
    | ||||    
T  35501455 aaagat 35501460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 12783628 - 12783675
Alignment:
Q  78 aaattagagttagactttttagagaaatcatagatgcaagaactcctt 125  Q
    ||||||| | |||||||||||||| |||||||||| ||||||||||||    
T  12783628 aaattagtggtagactttttagaggaatcatagatacaagaactcctt 12783675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 47185401 - 47185206
Alignment:
Q  2 gtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttaga 100  Q
    |||| ||| |||||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||| | ||||||||| |||| |||||||||||||||    
T  47185401 gtaattaactaaattttaaacatttggatgcaaaattctccaatgttaaactcataacaacaataattcatgatacaaaattagtgttagactttttaga 47185302  T
Q  101 gaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgata 196  Q
    | |||||||||| ||||||||| ||||||   || |||||||||||| |||| ||||||| | |||||||| ||||||||||||||| ||||||||    
T  47185301 ggaatcatagatacaagaactcttttgtacattataagtacatcatttctctttttatatgctataagtatctctaacaagttcattgtgatgata 47185206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 6024518 - 6024587
Alignment:
Q  7 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 76  Q
    ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6024518 taattaaattttagacatttggatacaaaattctccaatgttaaactcataacaacaataatacttgata 6024587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 23044652 - 23044825
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttagacttttt 97  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| |||| | |||||    
T  23044652 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaaatttttt 23044751  T
Q  98 agagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 170  Q
    |||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  23044752 agagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 23044825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 31884712 - 31884842
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttagacttttt 97  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| |||| | |||||    
T  31884712 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaaatttttt 31884811  T
Q  98 agagaaatcatagatgcaagaactcctttgt 128  Q
    |||| ||||  |||| ||| ||||| |||||    
T  31884812 agagtaatctaagatacaataactcatttgt 31884842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 44879529 - 44879476
Alignment:
Q  77 caaattagagttagactttttagagaaatcatagatgcaagaactcctttgtat 130  Q
    |||||||| |||||||||||||||| |||||||||| |||||||||||||||||    
T  44879529 caaattagtgttagactttttagaggaatcatagatacaagaactcctttgtat 44879476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 44879871 - 44879802
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatac 70  Q
    ||||| ||| |||||||||| ||| ||||| | ||||||| |||| ||||||||||||||| ||||||||    
T  44879871 cgtaattaactaaattttaatcttctagatgccaaattctccaatattaaactcataacaataataatac 44879802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 25621875 - 25621679
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagactttttag 99  Q
    ||||| || ||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||||||| ||||||    
T  25621875 cgtaattagttaaattttaaacttttggaagcaaaattctccaatgttaaactcataacaacaataatacatgatacaaaattagtgttagaccttttag 25621776  T
Q  100 agaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgata 196  Q
    || ||||||| || ||| ||||| ||||||| || |||||||||||||||||| ||| |||   |||  ||| |||||||| |||||||| ||||||    
T  25621775 aggaatcataaatacaataactcatttgtatactggaagtacatcattcctctttttctatgatatacatatctctaacaacttcattataatgata 25621679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 105 - 278
Target Start/End: Complemental strand, 6883607 - 6883442
Alignment:
Q  105 tcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaatta 204  Q
    |||||||| ||||||||| ||||||| ||| ||||||||||||||||| ||||||| | | |||||| |||||||||||||||||||||||| ||||| |    
T  6883607 tcatagatacaagaactcatttgtatactaaaagtacatcattcctctttttatatgctacaagtatctctaacaagttcattatgatgatataaaatca 6883508  T
Q  205 atattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 278  Q
    || || ||| ||||||||||| |||   ||| |||     ||||||||||||||||| ||||||||||||||||    
T  6883507 atgttcgaccgttgttaaaagcgta---tctttga-----tttagcacacttaataatttatatcaataatttt 6883442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 14904451 - 14904265
Alignment:
Q  11 taaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttagagaaatcata 109  Q
    ||||||||||||||||  || ||||||| | ||||||||| ||| ||||||||||||||| ||||||||| |||  |||||| ||||||||  |||||||    
T  14904451 taaattttaaacttttgaatgcaaaattatccaatgttaacctcctaacaacaataatacatgatacaaaattattgttagattttttagaagaatcata 14904352  T
Q  110 gatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgata 196  Q
    ||  ||| ||||| ||| ||| ||| ||||| |||| |||||| |||||||   |||||||| ||||||||||||||||||||||||    
T  14904351 gaaacaataactcatttatatactataagtatatcactcctctttttatatgttataagtatctctaacaagttcattatgatgata 14904265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 274
Target Start/End: Original strand, 25415782 - 25415890
Alignment:
Q  166 aagtatttctaacaagttcattatgatgataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataactta 265  Q
    |||||| |||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||| ||| | |||||||||||| |||||||| || |||    
T  25415782 aagtatctctaacaagttcattatgatgatacaaaatcaatgttagattgttgttaaaagtgtaccttcaaagatgaattttagtacacttaaaaattta 25415881  T
Q  266 tatcaataa 274  Q
    |||||||||    
T  25415882 tatcaataa 25415890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 278
Target Start/End: Original strand, 38422322 - 38422594
Alignment:
Q  7 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaatt-agagttagactttttagagaaat 105  Q
    |||||||||||||  ||||| ||| || | |||| |||| | |||| |||||||| |||| |||||||||||||   || |||||||||||||||  |||    
T  38422322 taattaaattttagccttttggatgcagacttctccaatatcaaacccataacaataatattacttgatacaaaaccagtgttagactttttagaagaat 38422421  T
Q  106 catagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaa 205  Q
    || |||| | ||||||||||| |||| || ||||||||||||||||| ||||||| | | |||||| |||| |||||||||| |||||||| || || |     
T  38422422 caaagatactagaactcctttatatgttacaagtacatcattcctctttttatatgctacaagtatctctatcaagttcattgtgatgatacaatatcag 38422521  T
Q  206 tattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 278  Q
    | |||||||  |||||| | ||| | | | |||  |||||| ||| || |||||  |||||||||||||||||    
T  38422522 tgttagactactgttaacattgtgcctcccatggggaatttaagcccatttaatcccttatatcaataatttt 38422594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 215
Target Start/End: Original strand, 43672737 - 43672906
Alignment:
Q  47 ttaaactcataacaacaataatacttgatacaaatt-agagttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatca 145  Q
    |||||| ||||||| ||||||||||||||||||| | ||  ||||||||||||||| ||||| |||| |   ||||||||| |||| || ||||||||||    
T  43672737 ttaaacccataacatcaataatacttgatacaaaatcagtattagactttttagaggaatcaaagataccgtaactcctttatatgttacaagtacatca 43672836  T
Q  146 ttcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatattagactg 215  Q
    ||||||| ||||||| |   ||||||||||| ||| |||||| |||||||| || || ||| ||||||||    
T  43672837 ttcctctttttatatgctgcaagtatttctatcaaattcattgtgatgatacaatatcaatgttagactg 43672906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 90087 - 90248
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaatta--gagttagacttttta 98  Q
    ||||| ||||||||||||| || ||| ||||||||||||| |||| |||||| ||||||||||||||||||||||| |||  |  | |||| | ||||||    
T  90087 cgtaattaattaaattttagacatttggatacaaaattctccaattttaaacccataacaacaataatacttgataaaaaaaaatgtgttaaatttttta 90186  T
Q  99 gagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatat 160  Q
    ||| ||||  |||| ||| ||||| ||||||| ||| || || ||||||||||| |||||||    
T  90187 gagtaatctaagatacaataactcatttgtatactacaaataaatcattcctctttttatat 90248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 2565935 - 2565866
Alignment:
Q  7 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 76  Q
    ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2565935 taattaaattttagacatttggatacaaaattctccaatgttaaactcataacaacaataatacttgata 2565866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 18780937 - 18781006
Alignment:
Q  7 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 76  Q
    ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18780937 taattaaattttagacatttggatacaaaattctccaatgttaaactcataacaacaataatacttgata 18781006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 19678375 - 19678245
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttagacttttt 97  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| |||| | |||||    
T  19678375 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaaatttttt 19678276  T
Q  98 agagaaatcatagatgcaagaactcctttgt 128  Q
    |||| ||||  |||| ||| ||||| |||||    
T  19678275 agagtaatctaagatacaataactcatttgt 19678245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 6271362 - 6271437
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 76  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  6271362 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgata 6271437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 29303515 - 29303342
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttagacttttt 97  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||  ||||| |||||||||||||||||||||||    ||||||| |||| | |||||    
T  29303515 cgtaattaattaaattttagacatttggatacaaaattctccaattctaaacacataacaacaataatacttgataaacaaaattagtgttaaatttttt 29303416  T
Q  98 agagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 170  Q
    |||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  29303415 agagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 29303342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 10023418 - 10023316
Alignment:
Q  174 ctaacaagttcattatgatgataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaata 273  Q
    ||||||||||||||||||||||| ||||| ||| ||||| || |||||||||||  | ||| |||  |||||||||||||||| ||||||  ||||||||    
T  10023418 ctaacaagttcattatgatgatacaaaatcaatgttagattgatgttaaaagtgcgcattcaatggagaattttagcacacttcataact--tatcaata 10023321  T
Q  274 atttt 278  Q
    |||||    
T  10023320 atttt 10023316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 45277258 - 45277333
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 76  Q
    ||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  45277258 cgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 45277333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 7880115 - 7880190
Alignment:
Q  1 cgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 76  Q
    ||||| || |||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  7880115 cgtaattagttaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 7880190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 25415498 - 25415567
Alignment:
Q  11 taaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa 80  Q
    ||||||||||| |||| |||  ||||||||  |||||||| ||||||||||||||||||| |||||||||    
T  25415498 taaattttaaagtttttgatggaaaattctctaatgttaagctcataacaacaataatacatgatacaaa 25415567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 6883653 - 6883603
Alignment:
Q  7 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcata 57  Q
    ||||||||||||||| |||| |||| |||||||| ||||||||||||||||    
T  6883653 taattaaattttaaatttttggatagaaaattctccaatgttaaactcata 6883603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 1015 - 903
Alignment:
Q  2 gtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagactttttaga 100  Q
    |||| ||| ||||| ||||||| || ||| ||||||||  ||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||    
T  1015 gtaattaactaaatattaaactattggatgcaaaattcaccaatgttaaactcataacaacaataatacatgatacaaaattagtgttagactttttaga 916  T
Q  101 gaaatcatagatg 113  Q
    | |||||||||||    
T  915 ggaatcatagatg 903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 1015 - 1104
Alignment:
Q  107 atagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgata 196  Q
    |||||| ||||||||| ||||||| ||||||||||||| ||||||| ||||||| | |||| ||| ||||||||||||||||||||||||    
T  1015 atagatacaagaactcttttgtatactagaagtacatcgttcctctttttatatgctataattatctctaacaagttcattatgatgata 1104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 2570 - 2635
Alignment:
Q  7 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatactt 72  Q
    ||||||||||||| || ||| ||||||||||| | ||||||||||| |||||||||||||||||||    
T  2570 taattaaattttagacatttggatacaaaattatccaatgttaaacacataacaacaataatactt 2635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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