View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21679_high_2 (Length: 469)
Name: NF21679_high_2
Description: NF21679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21679_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 22 - 435
Target Start/End: Complemental strand, 56313877 - 56313473
Alignment:
| Q |
22 |
catcatcattgcagcactggtagcagtattggaacagctcactgannnnnnnnnnnnnnnnnaagctgagacagggaaaatggcgcccccgccgccacca |
121 |
Q |
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| T |
56313877 |
catcatcattgcagcactggtagcagtattggaacagctcactg------ctgctgctgctgaagctgagacagggaaaatgacgcccccgccgccacca |
56313784 |
T |
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| Q |
122 |
caagcggagactaacagagagtttcccgcagcagcatattgtactaggtgcctaggttgatgctgctgctgc---atcatcatcaatccttcttcctctt |
218 |
Q |
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| T |
56313783 |
---gcggagactaacagagagtttcccgcagctgaatattgtactaggtgcctaggttgatgctgctgctgctgcataatcatcaatccttcttcttctt |
56313687 |
T |
|
| Q |
219 |
ctgaacggtaattagtaggaggaggagtattgctatacttggaaagcccaagagttgttgtgacatgatctgaattaccgccgctactgcttccttccat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56313686 |
ctgaacggtaattagtaggaggaggagtattgctatacttggaaagcccaagagttgttgtgacatgatctgaattaccgccgctactgcttccttccat |
56313587 |
T |
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| Q |
319 |
tttgttaactatgtgatcatcaattgtctttggtgattgtccaacaacaaatcccattcccaatattttttcattttgctgcttattcttgtctgaatgt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
56313586 |
tttgttaactatgtgatcatcaattgtctttggtgattgtccaacaacaaatcccattcccaata---tttcattttgctgcttattcttgtctgaatgt |
56313490 |
T |
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| Q |
419 |
gaagcagtagtacctct |
435 |
Q |
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| T |
56313489 |
gaagcagtagtacctct |
56313473 |
T |
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