View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21679_high_20 (Length: 324)
Name: NF21679_high_20
Description: NF21679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21679_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 24208342 - 24208657
Alignment:
| Q |
1 |
aattcttaaggaattattcattttttatttggttttgaatgttgtagaaggagagaaaactcaaggaaagattaagaagtggaaattgcatagtgaggaa |
100 |
Q |
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| T |
24208342 |
aattcttaaggaattattaattttttatttggttttaaatgttgtagaaggagagaaaactcaaggaaagattaagaagtggaaattgcatagtaaggaa |
24208441 |
T |
|
| Q |
101 |
gttccaaaaacataatgaggatcaaattcaactggatcatgagcagtttctagcacaagtaggattgaggttgatttcaaaggtgataaacatgaaaaag |
200 |
Q |
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| T |
24208442 |
gttccaaaaacacaatgaggatcaaattcaactggatcatgagcagtttctagcacaagtaggattgaggttgatttcaaaggtgataaacatgaaaaag |
24208541 |
T |
|
| Q |
201 |
ttgacaaaagatcacctaatatggtgtaatgaaaagttaaaccaaatcaattttgttgacaagaagattcaagtggagtattcatttttgctttttcctt |
300 |
Q |
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| T |
24208542 |
ttgacaaaagatcacctaatatggtgtaatgaaaagttaaaccaaatcaattttgttgacaagaagattcaagtggagtattcatttttgctttttcctt |
24208641 |
T |
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| Q |
301 |
gttgactatctctgct |
316 |
Q |
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|||||||||||||||| |
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| T |
24208642 |
gttgactatctctgct |
24208657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 134 - 305
Target Start/End: Original strand, 24217872 - 24218043
Alignment:
| Q |
134 |
ggatcatgagcagtttctagcacaagtaggattgaggttgatttcaaaggtgataaacatgaaaaagttgacaaaagatcacctaatatggtgtaatgaa |
233 |
Q |
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| T |
24217872 |
ggatcatgagcagttgatggctcaagtaggattgaggttgatttcaaaggtgataaacatgaaaaagttaagaaaagatcatctaatatggtgtagtgaa |
24217971 |
T |
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| Q |
234 |
aagttaaaccaaatcaattttgttgacaagaagattcaagtggagtattcatttttgctttttccttgttga |
305 |
Q |
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| T |
24217972 |
aagttaaagcaaatgaaatttgttgacaggaagattaagatggagtattctattttactttttccatgttga |
24218043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 243
Target Start/End: Complemental strand, 17832954 - 17832790
Alignment:
| Q |
73 |
taagaagtggaaattgcatagtgaggaagttccaaaaacataatgaggatcaaattcaactggatcatgagcagtttctagcacaagtaggattgaggtt |
172 |
Q |
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|||||| ||||||||||||||||| |||||||||||| || ||||||| |||||| ||||||||||| || | || ||||| |||||| | || |
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| T |
17832954 |
taagaactggaaattgcatagtgaagaagttccaaaagcaccatgagga------tcaacttgatcatgagcaattggttgctcaagttggattgcgatt |
17832861 |
T |
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| Q |
173 |
gatttcaaaggtgataaacatgaaaaagttgacaaaagatcacctaatatggtgtaatgaaaagttaaacc |
243 |
Q |
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|||||||| ||||||||||||| | | |||| |||||| || || ||||||| | ||||||||| |||| |
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| T |
17832860 |
gatttcaagggtgataaacatgtcacaattgagaaaagaacaagtactatggtgcagtgaaaagttgaacc |
17832790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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