View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21679_high_22 (Length: 308)
Name: NF21679_high_22
Description: NF21679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21679_high_22 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 30 - 308
Target Start/End: Original strand, 2686014 - 2686292
Alignment:
| Q |
30 |
taaataaataacataaacagaaactaatatatgtgtatcagttttttcctgaaagatgtatcagttgaatctcatgctcaagtgacataacattaagaac |
129 |
Q |
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| T |
2686014 |
taaataaataacataaacagaaactaatatatgtgtatcagttttttcctgaaagatgtatcagttgaatctcatgctcaagtgacataacattaagaac |
2686113 |
T |
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| Q |
130 |
aaggccatattaaactctcaatgcagacttctggaatgtctataaaattaaaagacttatgagtaccatttttggaattgtaaagaatcaatgccgaatc |
229 |
Q |
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| T |
2686114 |
aaggccatattaaactctcaatgcagacttctggaatgtctataaaattaatagacttatgagtaccatttttggaattgtaaagaatcaatgccgaatc |
2686213 |
T |
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| Q |
230 |
acttaaatcttttagcagcacttgatcatcctcaaaaacatatattaccttggtgtagatactatatctactacgatac |
308 |
Q |
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| T |
2686214 |
acttaaatcttttagcagcacttgatcatcctcaaaaacatatattaccttggtgtagatactatatctaccacgatac |
2686292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 2678182 - 2678282
Alignment:
| Q |
120 |
cattaagaacaaggccatattaaactctcaatgcagacttctggaatgtctataaaattaaaagacttatgagtaccatttttggaattgtaaagaatca |
219 |
Q |
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| T |
2678182 |
cattaagaacaaggccatattaaactctcaatacagacttctggattgtttttaagatttgtagacttaagagtaccatttttataattgtagagaatca |
2678281 |
T |
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| Q |
220 |
a |
220 |
Q |
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| T |
2678282 |
a |
2678282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 2678043 - 2678141
Alignment:
| Q |
30 |
taaataaataacataaacagaaactaatatatgtgtatcagttttttcctgaaag-atgtatcagttgaatctcatgctcaagtgacataacattaagaa |
128 |
Q |
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| T |
2678043 |
taaataaataacataaaaa--aactaatataagtttatcagtttaatc-tgaaaggatgtatcagttgaatctcacgctcaagtgacataaaattaagaa |
2678139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 989667 - 989621
Alignment:
| Q |
117 |
taacattaagaacaaggccatattaaactctcaatgcagacttctgg |
163 |
Q |
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| T |
989667 |
taacattaaaaacaaggtgatattaaactctcaatgcagacttctgg |
989621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 282
Target Start/End: Original strand, 4157859 - 4157898
Alignment:
| Q |
243 |
agcagcacttgatcatcctcaaaaacatatattaccttgg |
282 |
Q |
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|||| |||||||||||||||||||||||||||| |||||| |
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| T |
4157859 |
agcaacacttgatcatcctcaaaaacatatattgccttgg |
4157898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 282
Target Start/End: Original strand, 2678325 - 2678353
Alignment:
| Q |
254 |
atcatcctcaaaaacatatattaccttgg |
282 |
Q |
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| T |
2678325 |
atcatcctcaaaaacatatattaccttgg |
2678353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 4142049 - 4142081
Alignment:
| Q |
243 |
agcagcacttgatcatcctcaaaaacatatatt |
275 |
Q |
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| T |
4142049 |
agcaacacttgatcatcctcaaaaacatatatt |
4142081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 36577668 - 36577622
Alignment:
| Q |
117 |
taacattaagaacaaggccatattaaactctcaatgcagacttctgg |
163 |
Q |
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| T |
36577668 |
taacattaagaccaaggtgatattaaactctcaatgcatacttctgg |
36577622 |
T |
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