View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21679_high_4 (Length: 421)
Name: NF21679_high_4
Description: NF21679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21679_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 29339040 - 29339422
Alignment:
| Q |
19 |
acatcatcagagtagaaatagtgtgtttgaaatagtgacggttgtcaatcgatatcaaatatgtactgatatcgacaaacacagcaacatcttacaatac |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29339040 |
acatcatcagagtagaaatagtgtgcttgaaatagtgacggttgtcaatcgatatcaaatatgtactgatatcgacaaacacagcaacatcttacaatac |
29339139 |
T |
|
| Q |
119 |
ataatcacattagtatatagagtagaacctataaagctacgatactctaaaattgctaaagtataggtgtcatagccttattcccgtatgcatataatac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29339140 |
ataatcacattagtatatagagtagaacctataaagctacgatactctaaaattgctaaagtataggtgtcatagccttattcccgtatgcatataatac |
29339239 |
T |
|
| Q |
219 |
tcctagatcagtatccaaaaagtactctccacctttttacaattttaaacgataatatttgacagataaattagggatgcctcttcaacactttgggata |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29339240 |
tcctagatcagtatccaaaaagtactctccacctttttacaattttaaacgataatatttgacagataaattagggatgcctcttcaacactttgggata |
29339339 |
T |
|
| Q |
319 |
cagctccagtaacttgagccttgttctccctcaaattgtgagcataattggagtacatgcttctttattcatgttttgatgat |
401 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29339340 |
cagctccaataacttgagccttgttctccctcaaattgtgagcataattggagtacatacttctttattcatgttttgatgat |
29339422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 31 - 372
Target Start/End: Original strand, 29346866 - 29347208
Alignment:
| Q |
31 |
tagaaatagtgtgtttgaaatagtgacggttgtcaatcgatatcaa-atatgtactgatatcgacaaacacagcaacatcttacaatacataatcacatt |
129 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
29346866 |
tagaaatagtgtgtttgaaacagtgatggttgtcaatcgatatcaccatatgtactgatattgacaaacagagcaacatcttgcaatacataatcacatt |
29346965 |
T |
|
| Q |
130 |
agtatatagagtagaacctataaagctacgatactctaaaattgctaaagtataggtgtcatagccttattcccgtatgcatataatactcctagatcag |
229 |
Q |
| |
|
| |||||||||||||||||| ||||||| |||||||||||||||||||||| | | |||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
29346966 |
actatatagagtagaacctaaaaagctatgatactctaaaattgctaaagtgtcgatgtcatagccgtattcccgtatgcatataacactcctagatcag |
29347065 |
T |
|
| Q |
230 |
tatccaaaaagtactc-tccacctttttacaattttaaacgataatatttgacagataaattagggatgcctcttcaacactttgggatacagctccagt |
328 |
Q |
| |
|
|||||||||| | | ||| |||||||| ||||||||| |||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||| |
|
|
| T |
29347066 |
tatccaaaaaaaaaacctcctcctttttaaaattttaaaagatattatttgacagataaattaaggatgcctatt-aacactttgggatacagctccagt |
29347164 |
T |
|
| Q |
329 |
aacttgagccttgttctccctcaaattgtgagcataattggagt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29347165 |
aacttgagccttgttctccctcaaattgtgagcataattggagt |
29347208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University