View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21679_high_7 (Length: 379)

Name: NF21679_high_7
Description: NF21679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21679_high_7
NF21679_high_7
[»] chr1 (18 HSPs)
chr1 (20-379)||(48706444-48706801)
chr1 (81-357)||(27800033-27800310)
chr1 (173-379)||(27574773-27574977)
chr1 (57-361)||(19261968-19262273)
chr1 (136-232)||(21760071-21760167)
chr1 (32-148)||(15471852-15471969)
chr1 (187-323)||(16279038-16279174)
chr1 (290-361)||(22923312-22923383)
chr1 (176-325)||(39899493-39899642)
chr1 (266-379)||(27259845-27259956)
chr1 (36-324)||(11788739-11789028)
chr1 (267-358)||(26089138-26089229)
chr1 (265-361)||(15471988-15472084)
chr1 (283-361)||(19262217-19262293)
chr1 (118-306)||(42460343-42460531)
chr1 (269-328)||(16531553-16531612)
chr1 (20-116)||(27259859-27259956)
chr1 (226-306)||(31849722-31849802)
[»] chr5 (30 HSPs)
chr5 (23-379)||(31488293-31488650)
chr5 (37-379)||(10976134-10976478)
chr5 (36-357)||(16417661-16417984)
chr5 (38-361)||(34595538-34595864)
chr5 (57-339)||(7575678-7575961)
chr5 (141-361)||(11477457-11477677)
chr5 (36-325)||(26604196-26604491)
chr5 (177-360)||(36311461-36311644)
chr5 (117-218)||(28718472-28718573)
chr5 (264-362)||(6998575-6998673)
chr5 (40-232)||(23228373-23228566)
chr5 (265-375)||(8531732-8531842)
chr5 (139-293)||(15797787-15797941)
chr5 (136-293)||(19575565-19575722)
chr5 (57-357)||(37397054-37397352)
chr5 (265-361)||(19748522-19748616)
chr5 (266-359)||(23228167-23228260)
chr5 (57-148)||(25360246-25360338)
chr5 (266-376)||(10976120-10976228)
chr5 (265-375)||(31238507-31238613)
chr5 (263-361)||(25360133-25360229)
chr5 (266-348)||(13130708-13130790)
chr5 (266-361)||(16417889-16417982)
chr5 (266-361)||(25360265-25360358)
chr5 (61-139)||(19748415-19748494)
chr5 (323-379)||(15794790-15794845)
chr5 (159-201)||(6998680-6998722)
chr5 (32-102)||(12067438-12067508)
chr5 (266-314)||(10398390-10398438)
chr5 (266-357)||(19748396-19748484)
[»] chr3 (22 HSPs)
chr3 (23-379)||(17266829-17267184)
chr3 (118-362)||(17371216-17371460)
chr3 (57-351)||(20409335-20409629)
chr3 (60-357)||(29634481-29634769)
chr3 (117-362)||(55390487-55390730)
chr3 (71-361)||(29787798-29788089)
chr3 (118-228)||(1638296-1638403)
chr3 (223-361)||(29516631-29516769)
chr3 (36-232)||(50342308-50342505)
chr3 (38-148)||(1886321-1886433)
chr3 (264-379)||(11162568-11162683)
chr3 (267-363)||(1886203-1886299)
chr3 (173-361)||(50341922-50342109)
chr3 (268-361)||(1886342-1886433)
chr3 (266-357)||(20409556-20409645)
chr3 (265-361)||(25155919-25156014)
chr3 (273-361)||(29788037-29788122)
chr3 (309-361)||(29515762-29515814)
chr3 (266-328)||(14265716-14265778)
chr3 (49-116)||(29787810-29787879)
chr3 (177-210)||(50342201-50342234)
chr3 (266-362)||(17371133-17371227)
[»] chr8 (16 HSPs)
chr8 (31-379)||(26140473-26140819)
chr8 (23-379)||(24629464-24629821)
chr8 (57-357)||(12784739-12785039)
chr8 (57-357)||(22842873-22843178)
chr8 (71-313)||(32108496-32108739)
chr8 (117-292)||(27783856-27784028)
chr8 (36-361)||(10204899-10205230)
chr8 (121-345)||(32123684-32123908)
chr8 (265-349)||(12504428-12504512)
chr8 (42-148)||(12504523-12504630)
chr8 (282-328)||(10204931-10204977)
chr8 (266-325)||(29370555-29370614)
chr8 (266-325)||(32108680-32108739)
chr8 (37-116)||(12504416-12504497)
chr8 (266-328)||(12784966-12785028)
chr8 (57-185)||(29370499-29370628)
[»] chr6 (27 HSPs)
chr6 (53-357)||(19243136-19243441)
chr6 (60-361)||(20244530-20244837)
chr6 (60-361)||(22138514-22138821)
chr6 (57-357)||(24560161-24560462)
chr6 (38-375)||(18743528-18743857)
chr6 (118-271)||(8711292-8711445)
chr6 (174-306)||(22962050-22962182)
chr6 (174-306)||(23826211-23826343)
chr6 (57-177)||(2402543-2402664)
chr6 (118-201)||(5972747-5972830)
chr6 (32-218)||(21864596-21864782)
chr6 (163-359)||(33200822-33201022)
chr6 (168-361)||(21864324-21864517)
chr6 (163-361)||(30764517-30764713)
chr6 (266-348)||(17464916-17464996)
chr6 (164-293)||(14096084-14096213)
chr6 (266-325)||(23607796-23607855)
chr6 (42-210)||(33200443-33200613)
chr6 (282-357)||(24560145-24560218)
chr6 (270-379)||(21864689-21864793)
chr6 (37-130)||(30764870-30764964)
chr6 (32-72)||(3097360-3097400)
chr6 (266-341)||(17465029-17465102)
chr6 (266-306)||(20241870-20241910)
chr6 (266-306)||(22135854-22135894)
chr6 (266-306)||(22143207-22143247)
chr6 (71-130)||(23607795-23607855)
[»] chr7 (37 HSPs)
chr7 (36-361)||(23553707-23554034)
chr7 (37-377)||(7066984-7067331)
chr7 (57-374)||(41934887-41935217)
chr7 (83-353)||(3925096-3925364)
chr7 (57-255)||(10546014-10546211)
chr7 (117-277)||(27317459-27317619)
chr7 (36-211)||(31267402-31267578)
chr7 (53-247)||(16886169-16886366)
chr7 (36-261)||(7413868-7414095)
chr7 (20-253)||(26926725-26926960)
chr7 (141-291)||(1321273-1321422)
chr7 (113-199)||(12309377-12309463)
chr7 (152-361)||(36338002-36338209)
chr7 (177-352)||(150575-150750)
chr7 (83-325)||(29656083-29656325)
chr7 (266-359)||(5281762-5281855)
chr7 (266-348)||(3380326-3380408)
chr7 (266-352)||(11826462-11826548)
chr7 (266-361)||(12083617-12083710)
chr7 (177-357)||(28067532-28067710)
chr7 (317-375)||(7413658-7413716)
chr7 (266-379)||(26926849-26926960)
chr7 (266-361)||(16886289-16886382)
chr7 (266-376)||(7066970-7067078)
chr7 (266-325)||(29656278-29656337)
chr7 (266-362)||(28066582-28066676)
chr7 (53-207)||(28066599-28066753)
chr7 (57-218)||(12083279-12083441)
chr7 (273-359)||(18150011-18150097)
chr7 (177-218)||(7413782-7413823)
chr7 (266-312)||(4230184-4230230)
chr7 (177-218)||(5282037-5282078)
chr7 (38-95)||(11825025-11825082)
chr7 (266-306)||(5282126-5282166)
chr7 (266-361)||(11825025-11825117)
chr7 (37-85)||(18149878-18149926)
chr7 (57-129)||(41934920-41934995)
[»] chr2 (29 HSPs)
chr2 (57-291)||(11719105-11719340)
chr2 (137-361)||(12763966-12764191)
chr2 (150-325)||(20529349-20529524)
chr2 (36-253)||(23282623-23282839)
chr2 (180-361)||(5305214-5305394)
chr2 (260-379)||(20988967-20989084)
chr2 (23-148)||(12763822-12763949)
chr2 (141-280)||(18332986-18333126)
chr2 (32-144)||(26617241-26617354)
chr2 (266-357)||(28276330-28276421)
chr2 (23-148)||(20988828-20988953)
chr2 (36-232)||(18878832-18879029)
chr2 (266-348)||(31991557-31991639)
chr2 (266-360)||(18879184-18879278)
chr2 (265-379)||(26617104-26617218)
chr2 (301-361)||(28746102-28746162)
chr2 (183-323)||(44298281-44298421)
chr2 (266-361)||(12763837-12763930)
chr2 (36-231)||(28276586-28276782)
chr2 (168-231)||(18879094-18879157)
chr2 (32-98)||(28746780-28746846)
chr2 (201-325)||(18038812-18038936)
chr2 (316-359)||(26226633-26226676)
chr2 (20-116)||(20988987-20989084)
chr2 (168-247)||(37059344-37059423)
chr2 (282-379)||(26617272-26617365)
chr2 (266-328)||(31991672-31991734)
chr2 (300-352)||(5306291-5306341)
chr2 (266-361)||(23282625-23282718)
[»] scaffold0121 (1 HSPs)
scaffold0121 (57-313)||(5697-5955)
[»] scaffold0015 (1 HSPs)
scaffold0015 (57-357)||(22215-22516)
[»] chr4 (25 HSPs)
chr4 (57-357)||(44100835-44101136)
chr4 (53-348)||(12227054-12227350)
chr4 (177-360)||(20758598-20758781)
chr4 (177-360)||(20764989-20765172)
chr4 (39-232)||(25144856-25145050)
chr4 (163-359)||(24075670-24075866)
chr4 (266-360)||(25145206-25145300)
chr4 (36-211)||(24075413-24075589)
chr4 (140-361)||(23620540-23620758)
chr4 (263-361)||(23124333-23124429)
chr4 (266-348)||(17292456-17292538)
chr4 (266-348)||(24576584-24576666)
chr4 (117-277)||(3510049-3510209)
chr4 (153-237)||(35049342-35049426)
chr4 (37-107)||(23620539-23620609)
chr4 (137-233)||(20758854-20758950)
chr4 (137-233)||(20765245-20765341)
chr4 (174-248)||(48135774-48135848)
chr4 (266-325)||(12227273-12227332)
chr4 (266-328)||(3393914-3393976)
chr4 (266-328)||(13851076-13851138)
chr4 (266-328)||(13866686-13866748)
chr4 (271-328)||(21411353-21411410)
chr4 (271-328)||(21412035-21412092)
chr4 (266-326)||(44100848-44100908)
[»] scaffold0027 (3 HSPs)
scaffold0027 (32-148)||(36991-37108)
scaffold0027 (260-379)||(37122-37241)
scaffold0027 (266-379)||(36980-37089)


Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 20 - 379
Target Start/End: Complemental strand, 48706801 - 48706444
Alignment:
Q  20 tagagatttccaagattctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatcccttgta 119  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||| |||||||||  |||||||||||    
T  48706801 tagagatttccaagattctttgaaaagtcaaataatgaagagaacacaacatgtattttactgaa--aagtatatatattttcacattgaatcccttgta 48706704  T
Q  120 taagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtag 219  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48706703 taagatgagtgagacgtaagggaatgcacatctaagatgttgttttgtgcttaatcatgctcctctatcaattgaaacttgttagttggcagtgcagtag 48706604  T
Q  220 gagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtag 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48706603 gagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtag 48706504  T
Q  320 aatacatgtgttatgttctcttcattcttttgaattttcaaatgatgctgcaaatctcta 379  Q
    ||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||    
T  48706503 aatacatgtattgtgttctcttcattcttttggattttcaaatgatgctgcaaatctcta 48706444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 81 - 357
Target Start/End: Original strand, 27800033 - 27800310
Alignment:
Q  81 tgaatcaagtatatatgttttcacatcaaatcccttg-tataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgc 179  Q
    ||||| || |||||| ||||||||||| ||| ||||  |||  ||||||||  ||  |||||||||||  |||||||| |||||| | |||| ||||||     
T  27800033 tgaatgaactatataagttttcacatcgaattcctttatattggatgagtgtcacaaaagggaatgcatttctaagatgttgtttcgagcttgatcatgt 27800132  T
Q  180 tcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatg 279  Q
    |||||||||||||||||||||| ||||||||| | |||| || | ||||||||||||| |||||| || ||||| | | |||  ||||| ||| ||||||    
T  27800133 tcctctgtcaattgaaacttgtcagttggcagggaagtatgattgagttcaaaagaatatattgggatgcattcctttctgtgactactgatcctatatg 27800232  T
Q  280 agggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaatttt 357  Q
    | || ||| ||||| ||||| |||||| |||||||||||||||||||||||| | |||||||||||||||||||||||    
T  27800233 aagggattggatgtaataacatatatagttgattcggtagaatacatgtgttgtattctcttcattcttttgaatttt 27800310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 173 - 379
Target Start/End: Complemental strand, 27574977 - 27574773
Alignment:
Q  173 atcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatc 272  Q
    ||||||||||||||||| |||||| |||| ||||||||| | |||| || ||||||||||  ||  | ||||||||||||  | |||||    |||||||    
T  27574977 atcatgctcctctgtcatttgaaagttgtcagttggcaggggagtaagattaagttcaaagcaacctcttggaatacatttctttatgtgatgactcatc 27574878  T
Q  273 ttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaatgatgctgcaa 372  Q
    ||||||||| ||||||||||| | |||||||| | |||||| | ||||||||||||||  |||||||||||||||||||| ||||||||  | | |||||    
T  27574877 ttatatgagagaattcgatgtgaaaacctataaagttgatttgctagaatacatgtgt--tgttctcttcattcttttgacttttcaaagaaagatgcaa 27574780  T
Q  373 atctcta 379  Q
    |||||||    
T  27574779 atctcta 27574773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 57 - 361
Target Start/End: Complemental strand, 19262273 - 19261968
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggacgtaagg-gaatgcacatctaa 154  Q
    |||||||||||||||||||| | | ||||||| |||||| ||||||||||||||| | || || || ||||||||  |||    | |||||||| |||||    
T  19262273 aagagaacacaacatgtattctgcagaatcaactatataggttttcacatcaaattcattcgtttaggatgagtgtcacggggtgcgaatgcacttctaa 19262174  T
Q  155 gatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattca 254  Q
    ||| |||||||| |||| | ||||||||||||| ||||||||||||| |||| |  | ||||||||| ||||||| ||||||| |||||| || |||||     
T  19262173 gatgttgttttgagcttgagcatgctcctctgttaattgaaacttgtcagtttgtcgggcagtaggattaagttctaaagaatatattgggatgcattcc 19262074  T
Q  255 tatatgtccctactcatcttatatgagggaattcgatgt-tataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaa 353  Q
    | |||||    ||||||| ||||||| || ||| |||||  | ||||||||||  |||||  |||||||||||||||  | ||||||| ||| ||||||     
T  19262073 tttatgtgatgactcatcctatatgaagggattagatgtgaaaaacctatatagatgattttgtagaatacatgtgt--ttttctctttattattttgag 19261976  T
Q  354 ttttcaaa 361  Q
    ||||||||    
T  19261975 ttttcaaa 19261968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 21760167 - 21760071
Alignment:
Q  136 taagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaa 232  Q
    ||||||||||||| |||||||| ||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||| ||| || || ||||||||||    
T  21760167 taagggaatgcacctctaagatgttgttttgtacttgatcatgcccctctgtcaattgaaacttgtcagttggcagggcaataagattaagttcaaa 21760071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 15471852 - 15471969
Alignment:
Q  32 agattctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatc-aaatcccttgtataagatgagtg 130  Q
    |||||||||||||||||||| ||| |||| |||||||||| ||||| ||  |||||| ||||||| |||||||||| || ||| ||||||| ||||||||    
T  15471852 agattctttgaaaagtcaaagaatgaagataacacaacatatatttgaccaaatcaactatatatattttcacatcgaattcctttgtataggatgagtg 15471951  T
Q  131 ggacgtaagggaatgcac 148  Q
    || |||||| ||||||||    
T  15471952 gggcgtaagagaatgcac 15471969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 323
Target Start/End: Complemental strand, 16279174 - 16279038
Alignment:
Q  187 tcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaat 286  Q
    ||||||||||||||| ||||| ||| ||||||| | ||||||||||||||| |||| ||||| || | | | ||||   |||||| |||||| |||||||    
T  16279174 tcaattgaaacttgtcagttgacagggcagtagaattaagttcaaaagaatatattagaatatatccgtgtttgtcataactcatattatattagggaat 16279075  T
Q  287 tcgatgttataacctatatatttgattcggtagaata 323  Q
    ||||||| | |||||||||| |||||| |||||||||    
T  16279074 tcgatgtgaaaacctatatagttgatttggtagaata 16279038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 22923383 - 22923312
Alignment:
Q  290 atgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    |||| |||||||||| | ||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  22923383 atgtgataacctataaagttgattcagtagaatacatgtgttgtgttctcttcattcttttgaattttcaaa 22923312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 325
Target Start/End: Complemental strand, 39899642 - 39899493
Alignment:
Q  176 atgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatctta 275  Q
    ||||| |||||||||||||||||||||||||||||   || || || ||||||||||||||| |||| |||||||||| | | ||||  ||||||||||     
T  39899642 atgcttctctgtcaattgaaacttgttagttggcatgacaatatgattaagttcaaaagaatatattagaatacattcgtgtttgtcattactcatcttt 39899543  T
Q  276 tatgagggaattcgatgttataacctatatatttgattcggtagaataca 325  Q
    ||| | ||||||  |||| | ||| | |||| |||||| |||||||||||    
T  39899542 tattaaggaatttaatgtgagaacatgtataattgatttggtagaataca 39899493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 266 - 379
Target Start/End: Original strand, 27259845 - 27259956
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaatgat 365  Q
    ||||||| ||||||| || ||||||||| | ||| |||||| ||||||  ||||||||||| ||||  ||||||||||||||||||| |||||||| |||    
T  27259845 actcatcctatatgaagggattcgatgtgaaaacatatatagttgattatgtagaatacatttgtt--gttctcttcattcttttgagttttcaaaggat 27259942  T
Q  366 gctgcaaatctcta 379  Q
    | ||||||| ||||    
T  27259943 gttgcaaatatcta 27259956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 324
Target Start/End: Complemental strand, 11789028 - 11788739
Alignment:
Q  36 tctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatcccttg-tataagatgagtgggac 134  Q
    ||||||||||||||||  || ||||| |||||||||||||| | |  |||||  |||||| |||  |||||  ||| ||||  |||| ||||||||  ||    
T  11789028 tctttgaaaagtcaaaagattaagagcacacaacatgtattctgccaaatcatctatataggttaccacattgaattccttcatataggatgagtgtaac 11788929  T
Q  135 gtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaag 234  Q
      ||| |||||||| |||||||  || ||||| |||| || ||||||||| |||||||||||||| | | ||||||  ||||||  | |||||||||||     
T  11788928 agaagagaatgcacctctaagaggttcttttgagcttgattatgctcctccgtcaattgaaacttatcatttggcaaggcagtaaaattaagttcaaaac 11788829  T
Q  235 aatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatac 324  Q
    ||  | ||||||| ||||| | | |||    ||||||||||||||| || ||||||||| ||||| || ||| |||||| |||| |||||    
T  11788828 aacctcttggaatgcattcctttctgtgatgactcatcttatatgaagggattcgatgtgataacatacatagttgatttggtataatac 11788739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 358
Target Start/End: Original strand, 26089138 - 26089229
Alignment:
Q  267 ctcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttc 358  Q
    |||||| ||||||| || ||||||||| | ||| |||||| |||||| | |||||||| |||||| |||||| ||||||||||||| |||||    
T  26089138 ctcatcctatatgaagggattcgatgtgagaacttatatagttgatttgctagaatacctgtgttgtgttcttttcattcttttgacttttc 26089229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 265 - 361
Target Start/End: Original strand, 15471988 - 15472084
Alignment:
Q  265 tactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    |||||||| ||||||| || ||||||||| | ||| |||||| || ||| | ||||||||||| | | || ||||||||||||||||| ||||||||    
T  15471988 tactcatcctatatgaagggattcgatgtgaaaacttatatagttaatttgctagaatacatgcggtgtgctctcttcattcttttgacttttcaaa 15472084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 361
Target Start/End: Original strand, 19262217 - 19262293
Alignment:
Q  283 gaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    ||||| ||||| | |||||||||| ||||||| | |||||||||||  | |||||||||||||||||||| ||||||||    
T  19262217 gaatttgatgtgaaaacctatatagttgattctgcagaatacatgt--tgtgttctcttcattcttttgagttttcaaa 19262293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 306
Target Start/End: Complemental strand, 42460531 - 42460343
Alignment:
Q  118 tataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagt 217  Q
    ||||||||||||| || | |||||||||||  || || || |||||| | |||| |||||| | ||||||||||| |||| ||| ||||||||| |||      
T  42460531 tataagatgagtgtgaagaaagggaatgcatttccaatatgttgtttcgagcttgatcatgtttctctgtcaattaaaacatgtcagttggcagggcaac 42460432  T
Q  218 aggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatata 306  Q
    | ||  |||||||||||||| || || | | ||||  | | || |  |||||||||||||||| | |||| ||||| | ||||||||||    
T  42460431 atgatgaagttcaaaagaatatagtgtattgcatttctttttgccagtactcatcttatatgatgaaatttgatgtgaaaacctatata 42460343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 16531612 - 16531553
Alignment:
Q  269 catcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgt 328  Q
    ||||||||||||||||||| ||||| ||||| |||||| ||||||  ||| |||||||||    
T  16531612 catcttatatgagggaatttgatgtgataacatatatagttgattttgtataatacatgt 16531553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 27259956 - 27259859
Alignment:
Q  20 tagagatttccaagattctttgaaaagtcaaat-aataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt 116  Q
    |||| |||| ||| || ||||||||| |||||  ||| |||||||||  | ||||||| |||  |||||| |||||||||||||||||| ||||||||    
T  27259956 tagatatttgcaacatcctttgaaaactcaaaagaatgaagagaacaacaaatgtattctacataatcaactatatatgttttcacatcgaatccctt 27259859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 31849722 - 31849802
Alignment:
Q  226 gttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatata 306  Q
    |||||||||||| |||| |||| ||||||| | | || |||||||||| |||||| |||||| ||| | | ||||||||||    
T  31849722 gttcaaaagaatatattagaatgcattcatttttatcactactcatctaatatgaaggaatttgatataaaaacctatata 31849802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 23 - 379
Target Start/End: Original strand, 31488293 - 31488650
Alignment:
Q  23 agatttccaagattctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatc-ccttgtata 121  Q
    |||||| ||||| | |||||||||||||||||| |||| ||||||||||||||||||| ||| ||| ||||||||||||||| |  |||  |||||||||    
T  31488293 agatttacaagaatttttgaaaagtcaaataatgaagataacacaacatgtattttaccgaaacaactatatatgttttcacgttgaatttccttgtata 31488392  T
Q  122 agatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtagga 221  Q
    ||| | ||| ||| ||||||| ||||| |||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31488393 agaagtgtgtgacataagggagtgcacctctaagatgttgttttgtgcttgatcatgcttctctgtcaattgaaacttgttagttggcagtgcagtagga 31488492  T
Q  222 gtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaa 321  Q
     ||||||||||||||||| ||||||| ||||| | || ||| |||||||||||||||||||||||||||||| |||||||||||  ||||||  ||||||    
T  31488493 ttaagttcaaaagaatgtgttggaatgcattcctttacgtcgctactcatcttatatgagggaattcgatgtgataacctatattcttgattttgtagaa 31488592  T
Q  322 tacatgtgttatgttctcttcattcttttgaattttcaaatgatgctgcaaatctcta 379  Q
    |||||||||| |||||||||||||||||||||| |||||| |||| ||||||||||||    
T  31488593 tacatgtgttgtgttctcttcattcttttgaatattcaaaggatgttgcaaatctcta 31488650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 379
Target Start/End: Original strand, 10976134 - 10976478
Alignment:
Q  37 ctttgaaaagtcaaat-aataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaat-cccttgtataagatgagtgggac 134  Q
    |||||||||||||||  ||| ||||||||||||| ||||||||||  |||||| ||||||||||||| |||| ||| ||||||||||||||||||| |||    
T  10976134 ctttgaaaagtcaaaagaatgaagagaacacaacttgtattttaccaaatcaactatatatgttttcgcatcgaattcccttgtataagatgagtgtgac 10976233  T
Q  135 gtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaag 234  Q
    | |||| |||| || |||||||| || |||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  10976234 gaaaggaaatgtacctctaagatgttattttgtgcttgatcatgctcatatgtcaattgaaacttgttagttggcagtgcagtagaattaagttcaaaag 10976333  T
Q  235 aatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatg 334  Q
    ||| ||||| ||||||||| | | |||  |||||||||| |||||||| |||||||||| |||||||||||| |||||| ||||||||||| ||||| ||    
T  10976334 aatatattgaaatacattcctttttgttactactcatctaatatgaggaaattcgatgtgataacctatatagttgatttggtagaatacaagtgttgtg 10976433  T
Q  335 ttctcttcattcttttgaattttcaaatgatgctgcaaatctcta 379  Q
    || |||||||||||||||||||||||| |||||||||||||||||    
T  10976434 ttatcttcattcttttgaattttcaaaggatgctgcaaatctcta 10976478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 36 - 357
Target Start/End: Complemental strand, 16417984 - 16417661
Alignment:
Q  36 tctttgaaaagtcaaat-aataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtggga 133  Q
    |||||||||| |||||  ||| ||||||||||||||||||||||||  ||| || |||||| ||||| ||||  ||| |||| |||||||||||||| ||    
T  16417984 tctttgaaaactcaaaagaatgaagagaacacaacatgtattttaccaaattaactatataggtttttacattgaattccttcgtataagatgagtgtga 16417885  T
Q  134 cgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaa 233  Q
    || | | |||||||  |||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||  |||||| ||||    
T  16417884 cgaacgtgaatgcatttctaagatgttgttttgtgcttgatcatgctcctctgtcaattgaaacttgtcagttggcagagcagtaggcttaagtttaaaa 16417785  T
Q  234 gaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttat 333  Q
    |||||||||||||  ||||| | | ||||   |||||||||||||||||||||||||||| | ||| |||||  |||||| ||||||||||||||||| |    
T  16417784 gaatgtattggaacgcattcctttttgtcatgactcatcttatatgagggaattcgatgtgagaacttatattgttgatttggtagaatacatgtgttgt 16417685  T
Q  334 gttctcttcattcttttgaatttt 357  Q
    ||||||||||||||||||| ||||    
T  16417684 gttctcttcattcttttgagtttt 16417661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 38 - 361
Target Start/End: Original strand, 34595538 - 34595864
Alignment:
Q  38 tttgaaaagtcaaat-aataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggacg 135  Q
    ||||||||||||||  ||| |||||| |||||| |||||| |||  |||||| |||||| ||||||||| ||||| |||| |||||||||||||| ||||    
T  34595538 tttgaaaagtcaaaagaattaagagagcacaacttgtattataccaaatcaactatataggttttcacaacaaattcctttgtataagatgagtgtgacg 34595637  T
Q  136 taagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgc-agtaggagtaagttcaaaag 234  Q
     |||||||||||| |||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||| |||| || |||||||||||     
T  34595638 aaagggaatgcacctctaagatgttgttttgtgcttgatcatgctcctttgtcaattgaaacttgtcagttggcaatgcaagtatgattaagttcaaaat 34595737  T
Q  235 aatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatac-atgtgttat 333  Q
    ||| |||||||||||||| |  | | ||  |||||||||||||||| |||||||||||| | ||| |||||| |||||| |||||||||| | ||||| |    
T  34595738 aatatattggaatacatt-acttttatcattactcatcttatatgaaggaattcgatgtgaaaacttatatagttgatttggtagaatacaaagtgttgt 34595836  T
Q  334 gttctcttcattcttttgaattttcaaa 361  Q
    | ||||||||||||||||| ||||||||    
T  34595837 gctctcttcattcttttgagttttcaaa 34595864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 57 - 339
Target Start/End: Complemental strand, 7575961 - 7575678
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggacgtaagggaatgcacatctaag 155  Q
    ||||||||||||||||||||||    |||||| |||||| ||| ||||||| ||| |||| | |||||||||| | |  | | |||||||||  | ||||    
T  7575961 aagagaacacaacatgtattttgtcaaatcaactatataggttctcacatcgaattccttcgcataagatgagcgtgttgaacgggaatgcatttttaag 7575862  T
Q  156 atattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcat 255  Q
    || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| || ||||||||||||||| |||||| ||||| || |    
T  7575861 atgttgttttgtgcttgatcatgctcctctgtcaattgaaacttgtcagttggcagggcagtatgattaagttcaaaagaatatattggtatacactcct 7575762  T
Q  256 atatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctc 339  Q
     | |||| | ||||||||||||||||||||||||||| || ||  | |||| ||| || ||||||||||||||||| |||||||    
T  7575761 ttttgtcaccactcatcttatatgagggaattcgatgctagaaaatgtatagttggtttggtagaatacatgtgttgtgttctc 7575678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 141 - 361
Target Start/End: Complemental strand, 11477677 - 11477457
Alignment:
Q  141 gaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgta 240  Q
    |||||||  |||||||| |||||||| | || ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||| ||    
T  11477677 gaatgcatttctaagatgttgttttgagttttatcatgctcctctgtcaattgaaacttgttagttggcagagcagtagaattaagttcaaaagaatata 11477578  T
Q  241 ttggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctct 340  Q
    || || | ||||| | |  ||| |||||||||||||| ||  |||||| |||| | |||||||||  |||||||||||||||||||||| | ||||||||    
T  11477577 ttagactgcattcgtgttcgtcgctactcatcttatacgaatgaattcaatgtgagaacctatattgttgattcggtagaatacatgtgatgtgttctct 11477478  T
Q  341 tcattcttttgaattttcaaa 361  Q
    |||||||||||| ||||||||    
T  11477477 tcattcttttgagttttcaaa 11477457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 36 - 325
Target Start/End: Complemental strand, 26604491 - 26604196
Alignment:
Q  36 tctttgaaaagtcaaat-aataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtggga 133  Q
    |||||||||| |||||  ||| |||||||||||   |||||| ||||||||||| |||| ||||| ||| ||| ||| | || |||||| | ||||||||    
T  26604491 tctttgaaaactcaaaagaatgaagagaacacattttgtattatactgaatcaactatacatgttctcaaatcgaattcattcgtataaaaagagtggga 26604392  T
Q  134 cgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcct----ctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttc 229  Q
    | ||||| ||||||  |||||||| |||||||| |||  |||||||||||    |||||||||||||||||| ||||||||| ||| || || |||||||    
T  26604391 cataaggcaatgcatttctaagatgttgttttgagctggatcatgctcctagatctgtcaattgaaacttgtcagttggcagagcaatatgattaagttc 26604292  T
Q  230 aaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaataca 325  Q
    |||||||| |||| |||| ||||| | ||||| | ||||||| |||||||| |||||||||||| | ||| | |||| |||||| |||||||||||    
T  26604291 aaaagaatatattagaatgcattcctttatgttcatactcatattatatgaaggaattcgatgtgagaacatttataattgatttggtagaataca 26604196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 177 - 360
Target Start/End: Complemental strand, 36311644 - 36311461
Alignment:
Q  177 tgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttat 276  Q
    ||||||||||||||||||||||||| ||||||||| |||||| || |||  |||||  ||  | ||||||| | ||| | |||||    |||||||||||    
T  36311644 tgctcctctgtcaattgaaacttgtcagttggcagggcagtaagattaaactcaaagcaacctcttggaatgctttcctttatgtgatgactcatcttat 36311545  T
Q  277 atgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaa 360  Q
    |||| |||||||||||| ||||| |||||| ||||||  |||||||||||||||| ||||||||||||||| |||| |||||||    
T  36311544 atgaaggaattcgatgtcataacatatatagttgattttgtagaatacatgtgttgtgttctcttcattctattgacttttcaa 36311461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 28718472 - 28718573
Alignment:
Q  117 gtataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcag 216  Q
    |||||| ||||||||||| ||||||||||||| |||||||| ||||||| | ||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  28718472 gtataaaatgagtgggacataagggaatgcacctctaagatgttgttttatacttgatcatgctcctctgtcaattgaaacttgtcagttggcagggcag 28718571  T
Q  217 ta 218  Q
    ||    
T  28718572 ta 28718573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 6998673 - 6998575
Alignment:
Q  264 ctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaat 362  Q
    ||||||||||||||||| ||| |||||||| | |||||||| | |||||| ||||||||||||||||||||| |||||||||||||||| |||||||||    
T  6998673 ctactcatcttatatgatggagttcgatgtgaaaacctataaagttgatttggtagaatacatgtgttatgtgctcttcattcttttgagttttcaaat 6998575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 40 - 232
Target Start/End: Complemental strand, 23228566 - 23228373
Alignment:
Q  40 tgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggacgtaa 138  Q
    ||||||||||||  || |||||||||||||||||||| ||   |||||| ||||||  || ||| ||| ||| |||| |||||  |||||||   || ||    
T  23228566 tgaaaagtcaaaagattaagagaacacaacatgtattctatcaaatcaactatataaattctcatatcgaattccttcgtatagaatgagtgtcccggaa 23228467  T
Q  139 gggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaa 232  Q
    |||||||||| |||||||  || ||||| |||| ||||||||||||||||||||||||||||| |||||| || |||||| || ||||||||||    
T  23228466 gggaatgcacctctaagaggttcttttgagcttgatcatgctcctctgtcaattgaaacttgtgagttggtagggcagtaagattaagttcaaa 23228373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 265 - 375
Target Start/End: Complemental strand, 8531842 - 8531732
Alignment:
Q  265 tactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaatga 364  Q
    |||||||  |||| ||||||||||||||| | || ||||| | |||||||| ||||||| ||||||| |||||||||||||||||||| |||||| | ||    
T  8531842 tactcattgtatacgagggaattcgatgtgagaatctataaagttgattcgatagaatatatgtgttgtgttctcttcattcttttgacttttcatagga 8531743  T
Q  365 tgctgcaaatc 375  Q
    |||||||||||    
T  8531742 tgctgcaaatc 8531732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 293
Target Start/End: Complemental strand, 15797941 - 15797787
Alignment:
Q  139 gggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatg 238  Q
    |||||||||| |||||||  ||  ||||  ||| ||||||||||||||||||||||||||||| ||||||||| |||||| || ||||||||||  ||      
T  15797941 gggaatgcacctctaagaggttcctttgaacttgatcatgctcctctgtcaattgaaacttgtcagttggcagggcagtaagattaagttcaaagcaacc 15797842  T
Q  239 tattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgt 293  Q
    | ||||||| ||||| | | |||   ||||||| |||||||||||||||||||||    
T  15797841 tcttggaatgcattcctttgtgtgaatactcattttatatgagggaattcgatgt 15797787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 136 - 293
Target Start/End: Original strand, 19575565 - 19575722
Alignment:
Q  136 taagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaaga 235  Q
    ||||||||||||  ||| |||| |||||||| |||| |||||  |||  ||||||||||||||| | ||||| ||| | | ||||| |||||||||||||    
T  19575565 taagggaatgcatttcttagatgttgttttgagcttgatcatattccattgtcaattgaaacttatcagttgacagagtaataggattaagttcaaaaga 19575664  T
Q  236 atgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgt 293  Q
    || |||| |||| ||||| | ||||||| ||||||||||||||||  ||||| |||||    
T  19575665 atatatttgaatgcattcctttatgtccttactcatcttatatgaatgaatttgatgt 19575722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 57 - 357
Target Start/End: Original strand, 37397054 - 37397352
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatcccttg-tataagatgagtgggacgtaagggaatgcacatctaag 155  Q
    ||||||||| ||||| ||||||  |||||||| |||||| ||| ||||||| ||  | ||| |||||||||||||  ||  |  ||||||||  | ||||    
T  37397054 aagagaacataacatttattttgttgaatcaactatataggttctcacatcgaactctttggtataagatgagtgtcacaaacaggaatgcatttataag 37397153  T
Q  156 atattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcat 255  Q
    || |||||||| |||| || |||||| ||||| ||||||||||||| ||||| ||  |||||| || ||| || |||||||| ||||||||| |||||||    
T  37397154 atgttgttttgagcttgat-atgctcatctgttaattgaaacttgtcagttgacatggcagtatgattaattttaaaagaatatattggaatgcattcat 37397252  T
Q  256 atatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaatt 355  Q
     |  |||  | ||||||||||||||   ||||||   | | ||| | |||| |||||| |||||||||||||||   ||||||||| |||||||||| ||    
T  37397253 gttcgtcattgctcatcttatatgaataaattcggcatgagaacatgtataattgatttggtagaatacatgtg--gtgttctctttattcttttgagtt 37397350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 361
Target Start/End: Original strand, 19748522 - 19748616
Alignment:
Q  265 tactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    ||||||||||||||||||||||| ||||| | || |||||||  |||||  |||||||||||||||  |||||||||||||||||||| ||||||||    
T  19748522 tactcatcttatatgagggaatttgatgtaaaaatctatatagatgattttgtagaatacatgtgt--tgttctcttcattcttttgagttttcaaa 19748616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 359
Target Start/End: Complemental strand, 23228260 - 23228167
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttca 359  Q
    |||||||||||||||||||||||||||| | ||  |||||| |||||| | ||||||| ||||||| ||||||||| |||||||||| ||||||    
T  23228260 actcatcttatatgagggaattcgatgtgagaatttatatagttgatttgatagaataaatgtgttgtgttctcttaattcttttgagttttca 23228167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 25360338 - 25360246
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaat-cccttgtataagatgagtgggacgtaagggaatgcac 148  Q
    |||||||||||||||||||| | |  |||||  |||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  25360338 aagagaacacaacatgtattctgcaaaatcatctatataggttttcacatcgaattcccttgtataagatgagtgggatgtaagggaatgcac 25360246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 376
Target Start/End: Complemental strand, 10976228 - 10976120
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaatgat 365  Q
    ||||||||||||  |||||||||||||  | ||| |||||| |||||| |||| |||||| ||  | |||||||||||||||||||| |||||||| |||    
T  10976228 actcatcttatacaagggaattcgatgcgaaaacatatatagttgatttggtaaaatacaagt--tgtgttctcttcattcttttgacttttcaaaggat 10976131  T
Q  366 gctgcaaatct 376  Q
    |||||||||||    
T  10976130 gctgcaaatct 10976120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 265 - 375
Target Start/End: Original strand, 31238507 - 31238613
Alignment:
Q  265 tactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaatga 364  Q
    |||||||||||||||||  |||||||||| | |||||||| | |||||||||||||||||||||    ||  |||||||||||||||| |||||||| |     
T  31238507 tactcatcttatatgagttaattcgatgtgaaaacctataaagttgattcggtagaatacatgt----tgccctcttcattcttttgacttttcaaaggg 31238602  T
Q  365 tgctgcaaatc 375  Q
     ||||||||||    
T  31238603 cgctgcaaatc 31238613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 263 - 361
Target Start/End: Complemental strand, 25360229 - 25360133
Alignment:
Q  263 cctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    |||| ||||||||||||||| |||||| ||| | ||||||||||  |||||  ||| |||||||||||  ||||||||||||| |||||||||||||||    
T  25360229 cctaatcatcttatatgaggaaattcgttgtgaaaacctatatagatgattttgtataatacatgtgt--tgttctcttcattgttttgaattttcaaa 25360133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 13130790 - 13130708
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattctt 348  Q
    |||| |||||||||||| |||| ||||| ||| | |||||| ||||||  |||||||||||||||| ||||||||||||||||    
T  13130790 actcgtcttatatgaggaaatttgatgtgatagcatatatagttgattttgtagaatacatgtgttgtgttctcttcattctt 13130708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 361
Target Start/End: Original strand, 16417889 - 16417982
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    |||||||||||| || ||||||| |||| | |||||||||| || ||| |||| ||||||  |||| |||||||||||||||||||| ||||||||    
T  16417889 actcatcttatacgaaggaattcaatgtaaaaacctatatagttaatttggtaaaataca--tgttgtgttctcttcattcttttgagttttcaaa 16417982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 361
Target Start/End: Original strand, 25360265 - 25360358
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    ||||||||||||  |||||||||||||| | ||||||||||  |||||  | ||||||||  |||| |||||||||||||||||||| ||||||||    
T  25360265 actcatcttatacaagggaattcgatgtgaaaacctatatagatgattttgcagaataca--tgttgtgttctcttcattcttttgagttttcaaa 25360358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 19748415 - 19748494
Alignment:
Q  61 gaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaat-cccttgtataagatgagtgggacgtaag 139  Q
    |||||||||||||||| | |  |||||  |||||| ||||||||||| ||| ||||||||||||||||||||||||||||    
T  19748415 gaacacaacatgtattctgcaaaatcagctatataggttttcacatcgaattcccttgtataagatgagtgggacgtaag 19748494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 15794845 - 15794790
Alignment:
Q  323 acatgtgttatgttctcttcattcttttgaattttcaaatgatgctgcaaatctcta 379  Q
    ||||||||| |||||||||||||||||||| |||||||| | || ||||||||||||    
T  15794845 acatgtgttgtgttctcttcattcttttgacttttcaaa-ggtgttgcaaatctcta 15794790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 6998722 - 6998680
Alignment:
Q  159 ttgttttgtgcttaatcatgctcctctgtcaattgaaacttgt 201  Q
    |||||||||| || ||||||||| |||||||||||||||||||    
T  6998722 ttgttttgtgattgatcatgctcatctgtcaattgaaacttgt 6998680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 12067508 - 12067438
Alignment:
Q  32 agattctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttc 102  Q
    |||||||||||||||||||| ||  ||||||||| |||||||||| ||   |||||| |||||| ||||||    
T  12067508 agattctttgaaaagtcaaagaaagaagagaacataacatgtattctagcaaatcaactatataagttttc 12067438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 10398438 - 10398390
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattc 314  Q
    ||||||||||||||| |||||||||| | ||||| |||||| |||||||    
T  10398438 actcatcttatatgaaggaattcgatatcataacttatatagttgattc 10398390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 19748484 - 19748396
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaatttt 357  Q
    ||||||||||||  |||||||||||||| | ||||||||||  |||||  | ||||||||  |||| ||||| |||||||||||||| ||||    
T  19748484 actcatcttatacaagggaattcgatgtgaaaacctatatagctgattttgcagaataca--tgttgtgttc-cttcattcttttgagtttt 19748396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 23 - 379
Target Start/End: Complemental strand, 17267184 - 17266829
Alignment:
Q  23 agatttccaagattctttgaaaagtcaaataataaagagaacacaacatgtatttt-actgaatcaagtatatatgttttcacatcaaatccctt-gtat 120  Q
    |||||| ||||||||||||||||| |||| ||| |||||||| |||||||| |||| || ||||||| ||||||||||||||||||  || |||| ||||    
T  17267184 agatttgcaagattctttgaaaagacaaagaatgaagagaactcaacatgtttttttaccgaatcaactatatatgttttcacatcgtattcctttgtat 17267085  T
Q  121 aagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtagg 220  Q
    | |||||||| |||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||| |    
T  17267084 aggatgagtgtgacgtaagggaaagcacctctaagatattgttttgtgcttgatcatgctcctctgtcaattgaaacttgtcagttggaagtgcagtaag 17266985  T
Q  221 agtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtaga 320  Q
    | ||||||||| ||||| ||||| ||| ||||| | ||||||  |||||||| ||||| |  | ||||||||| | ||| |||||| |||||| ||| ||    
T  17266984 attaagttcaatagaatatattgaaatgcattcctttatgtcgttactcatcctatataaaaggattcgatgtgaaaacatatatagttgatttggtgga 17266885  T
Q  321 atacatgtgttatgttctcttcattcttttgaattttcaaatgatgctgcaaatctcta 379  Q
    ||||||||||  ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  17266884 atacatgtgt--tgttctcttcattcttttgaa-tttcaaaggatgctgcaaatctcta 17266829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 118 - 362
Target Start/End: Original strand, 17371216 - 17371460
Alignment:
Q  118 tataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagt 217  Q
    |||| |||||||| |||| | | |||||||  |||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  17371216 tataggatgagtgtgacgaacgagaatgcaattctaagatgttgttttgtgcttgatcatgctcctttgtcaattgaaacttgttagttggcagtgcagt 17371315  T
Q  218 aggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggt 317  Q
    |||| |||| |||||||||| ||||||||| ||||||| | ||||  |||||||||||||||||  |||||||||| |||||||||| | ||||||  ||    
T  17371316 aggattaagctcaaaagaatatattggaatgcattcatgtttgtcgttactcatcttatatgagcaaattcgatgtgataacctataaagttgattttgt 17371415  T
Q  318 agaatacatgtgttatgttctcttcattcttttgaattttcaaat 362  Q
    |||||||||||||| |||||| ||||| ||||||| |||||||||    
T  17371416 agaatacatgtgttgtgttcttttcatacttttgagttttcaaat 17371460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 57 - 351
Target Start/End: Complemental strand, 20409629 - 20409335
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggacgtaagggaatgcacatctaag 155  Q
    |||||||||||||||||||| | | ||||||| |||||| ||||||||||| ||| |||| ||||| ||||||||  |   |||||||||||  ||||||    
T  20409629 aagagaacacaacatgtattctgccgaatcaactatataagttttcacatcgaattccttcgtataggatgagtgtaagaaaagggaatgcatttctaag 20409530  T
Q  156 atattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcat 255  Q
    || |||||| ||| || ||||||| ||| |||||||| |||||||||||||| ||| ||||||||| ||||||||||| ||| ||||| ||| || || |    
T  20409529 atgttgttt-gtgtttgatcatgcccctttgtcaattaaaacttgttagttgacagagcagtaggattaagttcaaaataatatattgaaatgcaatcct 20409431  T
Q  256 atatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttg 351  Q
     | |||  | ||||||| ||||||| || |||| |||| ||||| |||||| ||||||| |||||||||||||||| |||||||||||||||||||    
T  20409430 ttttgtgacgactcatcctatatgaagggattcaatgtgataacttatatagttgattcagtagaatacatgtgttgtgttctcttcattcttttg 20409335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 60 - 357
Target Start/End: Complemental strand, 29634769 - 29634481
Alignment:
Q  60 agaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatcccttgtataagatgagtgggacgtaagggaatgcacatctaagatat 159  Q
    ||||||||||||||| | ||| ||||||| |||||| ||| |||||||||||         ||||||||||||||  |||||| ||||| |||||||| |    
T  29634769 agaacacaacatgtaatctaccgaatcaactatataagttctcacatcaaat---------aagatgagtgggacaaaagggattgcacttctaagatgt 29634679  T
Q  160 tgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatat 259  Q
    ||||||||| || |||||| |||| ||||||||||||||||| |||||| |   |||||||| ||||||||||||||| ||||| ||| || || | | |    
T  29634678 tgttttgtgtttgatcatgttcctttgtcaattgaaacttgtcagttggtatgacagtaggattaagttcaaaagaatatattgaaatgcactccttttt 29634579  T
Q  260 gtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaatttt 357  Q
    ||| ||||||||| |||||||    ||||||||| ||||| |||| | |||||| |||||||||||||||||   |||||||||||||||||| ||||    
T  29634578 gtcactactcatcctatatgaaaatattcgatgtgataacatataaagttgatttggtagaatacatgtgttgcattctcttcattcttttgagtttt 29634481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 117 - 362
Target Start/End: Complemental strand, 55390730 - 55390487
Alignment:
Q  117 gtataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcag 216  Q
    ||||||||||||||  ||  ||| |||||||| |||| ||| | |||| || ||| ||||||||| ||||||||||||||||||| ||||||||  ||||    
T  55390730 gtataagatgagtgtcacaaaagagaatgcacttcta-gatgtagtttcgtacttgatcatgctcatctgtcaattgaaacttgtcagttggcaaggcag 55390632  T
Q  217 taggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcgg 316  Q
    ||||| ||||||||||| ||||||||||||| || |||| | | ||   |||| |||||||||||| |||||||||| | |||||||||| ||||||| |    
T  55390631 taggattaagttcaaaataatgtattggaatgcactcattt-tctcgtgactcgtcttatatgaggaaattcgatgtgaaaacctatatagttgattcag 55390533  T
Q  317 tagaatacatgtgttatgttctcttcattcttttgaattttcaaat 362  Q
    |  |||||||||||||||||||| |||||||||||| |||||||||    
T  55390532 ttaaatacatgtgttatgttctcctcattcttttgagttttcaaat 55390487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 71 - 361
Target Start/End: Complemental strand, 29788089 - 29787798
Alignment:
Q  71 tgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgc 169  Q
    |||||| ||| ||||||| |||||| ||||||||||| ||| |||| ||||||  |||||| |||| |   |||||||  | |||||| |||||||| |     
T  29788089 tgtattctaccgaatcaactatataagttttcacatcgaattccttcgtataatttgagtgtgacgaacaagaatgcatttataagatgttgttttgagt 29787990  T
Q  170 ttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactc 269  Q
    || ||||||||||| ||||||||||||||||| |||||| || | | |  || ||||||||||| |||  ||| |||| |||||||   |||| ||| ||    
T  29787989 ttgatcatgctcctatgtcaattgaaacttgtcagttggtagggaaatgagattaagttcaaaaaaatagattagaatgcattcatgcttgtcactattc 29787890  T
Q  270 atcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    ||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||| | ||||||||||||| |||||| ||||||||    
T  29787889 atcttatatgaaggaatttgatgtgagaacctatatagttgattcggtagaatacatgtgatgtgttctcttcattattttgagttttcaaa 29787798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 1638403 - 1638296
Alignment:
Q  118 tataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagt 217  Q
    ||||||||||||||||| ||||||||||||| ||||||||   ||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  1638403 tataagatgagtgggacataagggaatgcacctctaagat---gttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagt 1638307  T
Q  218 aggagtaagtt 228  Q
    | || ||||||    
T  1638306 atgattaagtt 1638296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 223 - 361
Target Start/End: Complemental strand, 29516769 - 29516631
Alignment:
Q  223 taagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaat 322  Q
    ||||||| ||||||||||||||||| ||||| | | |||    ||||||||||||||||| ||||| |||| | |||||||| | |||||| ||||||||    
T  29516769 taagttctaaagaatgtattggaatgcattcttttttgttgtgactcatcttatatgaggaaattcaatgtgaaaacctataaagttgatttggtagaat 29516670  T
Q  323 acatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    ||||||||| |||| ||||||||||||| | ||||||||    
T  29516669 acatgtgttgtgttatcttcattctttttagttttcaaa 29516631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 50342505 - 50342308
Alignment:
Q  36 tctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggac 134  Q
    ||||||||||||||||  || |||| ||||||||||||||| | | ||||||| |||||| |||  |||||| ||| |||| |||||  |||||||   |    
T  50342505 tctttgaaaagtcaaaagattaagaaaacacaacatgtattctgcagaatcaactatataggttaccacatcgaattccttcgtatagaatgagtgttcc 50342406  T
Q  135 gtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaa 232  Q
      |||||||||||| |||||||  || ||||| |||| ||||||||||| ||||| ||||||||||| |||||| || | |||| || ||||||||||    
T  50342405 agaagggaatgcacctctaagaggttcttttgagcttgatcatgctcctttgtcatttgaaacttgtcagttggtagcgaagtaagattaagttcaaa 50342308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 1886433 - 1886321
Alignment:
Q  38 tttgaaaagtcaaat-aataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatc-aaatcccttgtataagatgagtgggacg 135  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||  |||||| |||||||||||||||||| || ||| ||||||||||||| || | ||    
T  1886433 tttgaaaagtcaaaagaatgaagagaacacaacatgtattttaccaaatcaactatatatgttttcacatcgaattccgttgtataagatgattgaggcg 1886334  T
Q  136 taagggaatgcac 148  Q
    |||| ||||||||    
T  1886333 taagagaatgcac 1886321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 379
Target Start/End: Complemental strand, 11162683 - 11162568
Alignment:
Q  264 ctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaatg 363  Q
    ||||||||| ||||||| || |||| |||| | |||||||| | ||||||   ||||||||||||||| | ||||||||||||||||||||||||||| |    
T  11162683 ctactcatcatatatgaagggattccatgtgaaaacctatacagttgattatatagaatacatgtgttgtattctcttcattcttttgaattttcaaagg 11162584  T
Q  364 atgctgcaaatctcta 379  Q
    ||| | ||||||||||    
T  11162583 atgattcaaatctcta 11162568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 267 - 363
Target Start/End: Complemental strand, 1886299 - 1886203
Alignment:
Q  267 ctcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaatg 363  Q
    |||||| ||||||| || ||||||||| | ||| |||| | |||||| | ||||||||||||||| ||||||||| |||||||||| ||||||||||    
T  1886299 ctcatcctatatgaagggattcgatgtgagaacttatacagttgatttgctagaatacatgtgttgtgttctctttattcttttgacttttcaaatg 1886203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 50342109 - 50341922
Alignment:
Q  173 atcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatc 272  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||||| || | || |||||  ||  | ||||||| ||||| | |  ||    ||||||     
T  50342109 atcatgctcctctatcaattgaaacttgtcagttggca-tgcagtaagattcagctcaaagcaacctcttggaatgcattcctttccgtgatgactcatt 50342011  T
Q  273 ttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    |||||||| |||||||||| |  | || |||||| ||||||  |||||||||| ||||| |||||||||||||| ||||| ||||||||    
T  50342010 ttatatgaaggaattcgatatggtcacatatatagttgattttgtagaatacacgtgttgtgttctcttcattcatttgacttttcaaa 50341922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 1886342 - 1886433
Alignment:
Q  268 tcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    ||||||||||  | |||||||||||| | ||| |||||| |||||| |||| |||||||||  | |||||||||||||||||||| ||||||||    
T  1886342 tcatcttatacaacggaattcgatgtgaaaacatatatagttgatttggtaaaatacatgt--tgtgttctcttcattcttttgacttttcaaa 1886433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 357
Target Start/End: Original strand, 20409556 - 20409645
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaatttt 357  Q
    ||||||| |||| || |||||||||||| | ||| |||||| ||||||||| ||||||||  |||| |||||||||||||||| ||| ||||    
T  20409556 actcatcctatacgaaggaattcgatgtgaaaacttatatagttgattcggcagaataca--tgttgtgttctcttcattcttgtgagtttt 20409645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 265 - 361
Target Start/End: Complemental strand, 25156014 - 25155919
Alignment:
Q  265 tactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    |||||||||||||||| || |||| |||| | |||||||||| |||||| ||||||| ||||||| |   ||||||||||| |||||| ||||||||    
T  25156014 tactcatcttatatgaagggattctatgtgagaacctatatagttgatttggtagaa-acatgtgatgcattctcttcattattttgagttttcaaa 25155919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 361
Target Start/End: Original strand, 29788037 - 29788122
Alignment:
Q  273 ttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    ||||| || |||||||||||| | ||| |||||| ||||||||||||||||||   |   |||||||||||||||||||| ||||||||    
T  29788037 ttatacgaaggaattcgatgtgaaaacttatatagttgattcggtagaatacaaacg---tgttctcttcattcttttgagttttcaaa 29788122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 29515814 - 29515762
Alignment:
Q  309 tgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    ||||| ||||||||||||||||| |||| ||||||||||||| | ||||||||    
T  29515814 tgatttggtagaatacatgtgttgtgttatcttcattctttttagttttcaaa 29515762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 328
Target Start/End: Original strand, 14265716 - 14265778
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgt 328  Q
    |||| |||||| |||||||||||||||| ||||| |||||| ||||||| | | |||||||||    
T  14265716 actcgtcttatttgagggaattcgatgtgataacatatatagttgattctgcataatacatgt 14265778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 29787810 - 29787879
Alignment:
Q  49 aaataataaagagaacaca--acatgtattttactgaatcaagtatatatgttttcacatcaaatccctt 116  Q
    ||||||| |||||||||||  ||||||||| ||| ||||||| |||||| ||| ||||||||||| ||||    
T  29787810 aaataatgaagagaacacatcacatgtattctaccgaatcaactatataggttctcacatcaaattcctt 29787879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 50342234 - 50342201
Alignment:
Q  177 tgctcctctgtcaattgaaacttgttagttggca 210  Q
    ||||||||||||||||||||||||| ||||||||    
T  50342234 tgctcctctgtcaattgaaacttgtcagttggca 50342201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 362
Target Start/End: Complemental strand, 17371227 - 17371133
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaat 362  Q
    ||||||| ||||||| ||||||| |||| | |||||||| | ||||||   |||||||||||||   ||||||||| |||||||||| |||||||||    
T  17371227 actcatcctatatgaaggaattcaatgtga-aacctataaagttgatttt-tagaatacatgtgccgtgttctctttattcttttgagttttcaaat 17371133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 31 - 379
Target Start/End: Original strand, 26140473 - 26140819
Alignment:
Q  31 aagattctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagt 129  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||| |||| |  ||||| |||||||||||| ||| |||| |||||||||||||    
T  26140473 aagattctttgaaaagtcaatgaatgaagagaacacaacatgtattttaccgaattagctatatttgttttcacatcgaattcctttgtataagatgagt 26140572  T
Q  130 gggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttc 229  Q
    | ||||||||||||| ||| |||||||| ||||||||||||| || |||||||||| | ||||||||| ||| |||| |||||||| || || |||||||    
T  26140573 gtgacgtaagggaatacacctctaagatgttgttttgtgcttgataatgctcctctattaattgaaacatgtcagtttgcagtgcaatatgattaagttc 26140672  T
Q  230 aaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtg 329  Q
    |||||||||||||| ||| ||||| | ||  |  ||||||||||| ||| ||| |||||||||  |||||||||||  |||||| |||||||||||||||    
T  26140673 aaaagaatgtattgtaatgcattcctttactttgctactcatcttgtat-aggaaattcgatg--ataacctatattcttgatttggtagaatacatgtg 26140769  T
Q  330 ttatgttctcttcattcttttgaattttcaaatgatgctgcaaatctcta 379  Q
    || ||||||||||||||||||||||||||||| || ||||| ||||||||    
T  26140770 ttgtgttctcttcattcttttgaattttcaaaggaagctgctaatctcta 26140819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 23 - 379
Target Start/End: Complemental strand, 24629821 - 24629464
Alignment:
Q  23 agatttccaagattctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatcc-cttgtata 121  Q
    |||||| ||||| ||||||||||||||||  |  |||| || ||||| ||||||||||  |||  | ||||||| |||| ||||| |||   ||||||||    
T  24629821 agatttgcaagactctttgaaaagtcaaaagaataagaaaaaacaacttgtattttaccaaatatactatatatatttttacatcgaattttcttgtata 24629722  T
Q  122 agatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtagga 221  Q
    ||||||||| || | |||| |||||||  | ||||| |||||||||| || ||||||||||||||||||||||||||||| |||| | ||||||||| ||    
T  24629721 agatgagtgtgatgaaaggcaatgcaccccaaagatgttgttttgtgtttgatcatgctcctctgtcaattgaaacttgtcagttagtagtgcagtaaga 24629622  T
Q  222 gtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaa 321  Q
     |||||||||||||||||||||| || ||||| | |||||  ||||| ||||||||||||||||||| |||| | ||  |||||| |||||| |||||||    
T  24629621 ttaagttcaaaagaatgtattggtatgcattcttttatgtagctactaatcttatatgagggaattccatgtgaaaatatatatagttgatttggtagaa 24629522  T
Q  322 tacatgtgttatgttctcttcattcttttgaattttcaaatgatgctgcaaatctcta 379  Q
    |||| ||||| ||||||||||| |||||||| | || ||| |||||||||||||||||    
T  24629521 tacaagtgttgtgttctcttcactcttttgagtgtttaaaggatgctgcaaatctcta 24629464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 57 - 357
Target Start/End: Complemental strand, 12785039 - 12784739
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggacgtaagggaatgcacatctaag 155  Q
    ||||||| |||||||||||| ||| ||||||| |||||| |||||||||||||||  ||| |||||||||||||| |||  | |||||||||  ||||||    
T  12785039 aagagaatacaacatgtattctaccgaatcaactatatacgttttcacatcaaatttcttcgtataagatgagtgtgacaaacgggaatgcatttctaag 12784940  T
Q  156 atattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcat 255  Q
    || |||||||| |||| ||||||||||| ||| ||||||||||||| |||||||||  ||||| || ||||| ||||| ||  ||||||||| ||| | |    
T  12784939 atgttgttttgagcttgatcatgctcctttgttaattgaaacttgtcagttggcagaccagtatgattaagtccaaaaaaaa-tattggaatgcatacgt 12784841  T
Q  256 atatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaatt 355  Q
     || ||  ||||||||||||||||| |||||||||||| | ||| | ||||  ||| | |||||||||||||||| ||||||||||||||||||||| ||    
T  12784840 gtacgttactactcatcttatatgaaggaattcgatgtgagaacatgtataactgacttggtagaatacatgtgtcatgttctcttcattcttttgagtt 12784741  T
Q  356 tt 357  Q
    ||    
T  12784740 tt 12784739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 57 - 357
Target Start/End: Complemental strand, 22843178 - 22842873
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatcccttg---ta--taagatgagtgggacgtaagggaatgcacatc 151  Q
    |||| |||||||| |||||| ||| ||||||| |||||| ||||||||||||||| ||||    ||  || |||||| |  ||  ||| |||||||  ||    
T  22843178 aagataacacaacttgtattctaccgaatcaactatataagttttcacatcaaattccttcctatagctaggatgagcgtcacaaaagtgaatgcatttc 22843079  T
Q  152 taagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacat 251  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||| ||||||||  || |||||||||||| |||||| ||||||    
T  22843078 taagatattgttttgagcttgctcatgctcctctgtcaattgaaacttgttagttggcagggcagtagggttatgttcaaaagaatatattgggatacat 22842979  T
Q  252 tcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttg 351  Q
    || | | |||    ||||||||||||||| || ||||||||| | ||| |||||| |||||| |||||||||||  |||  ||||| |||||||||||||    
T  22842978 tcttttttgtgatgactcatcttatatgaagggattcgatgtgagaacttatatagttgatttggtagaatacaattgtcgtgttcacttcattcttttg 22842879  T
Q  352 aatttt 357  Q
    | ||||    
T  22842878 agtttt 22842873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 71 - 313
Target Start/End: Complemental strand, 32108739 - 32108496
Alignment:
Q  71 tgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgc 169  Q
    |||||| ||| || |||| |||||| ||| ||||||| ||| | || |||||||||||||| |||  | | |||||||  |||||||  |||||||| ||    
T  32108739 tgtattctaccgagtcaactatataggttctcacatcgaattcattcgtataagatgagtgtgacaaacgagaatgcatttctaagacgttgttttgagc 32108640  T
Q  170 ttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactc 269  Q
    || ||||||||||||||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||  |||| |||| ||||| | | ||||  ||| |    
T  32108639 ttgatcatgctcctctgtcaattgaaacttgtcagttgccagggcagtaggattaagttcaaaagaacatattagaatgcattcctttttgtcattaccc 32108540  T
Q  270 atcttatatgagggaattcgatgttataacctatatatttgatt 313  Q
    |||||||||||||||||||||||  | ||| |||||| ||||||    
T  32108539 atcttatatgagggaattcgatgagagaacatatatagttgatt 32108496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 292
Target Start/End: Original strand, 27783856 - 27784028
Alignment:
Q  117 gtataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcag 216  Q
    ||||| |||||||||||| ||||||||||||| ||||||||   ||||||| ||| |||||  |||||||||||||||||||||| |||||||||  |||    
T  27783856 gtatatgatgagtgggacataagggaatgcacctctaagat---gttttgtacttgatcataatcctctgtcaattgaaacttgtcagttggcaggtcag 27783952  T
Q  217 taggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatg 292  Q
    || || ||||||||| | ||  | ||||||| ||||||| | | || ||||||||||||||||||| |||| ||||    
T  27783953 taagattaagttcaagacaaactcttggaatgcattcatgtttatcactactcatcttatatgaggaaatttgatg 27784028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 36 - 361
Target Start/End: Original strand, 10204899 - 10205230
Alignment:
Q  36 tctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatc-aaatcccttgtataagatgagtgggac 134  Q
    ||||||||||||||||  || |||||| ||||||||||||| | | ||||||| |||||| |||   ||||| || ||| ||||||| ||||||||  ||    
T  10204899 tctttgaaaagtcaaaagattaagagagcacaacatgtattctgccgaatcaactatataggttacaacatcgaattccattgtataggatgagtgtcac 10204998  T
Q  135 gtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtca-----attgaaacttgttagttggcagtgcagtaggagtaagttc 229  Q
    | |||||||||||| |||||||  || ||||  |||| ||||| || || |||||     |||||||||||| ||||||||| ||||||  | |||||||    
T  10204999 ggaagggaatgcacctctaagaggttattttaagcttgatcatcctactttgtcaattatattgaaacttgtcagttggcagagcagtacaattaagttc 10205098  T
Q  230 aaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtg 329  Q
    |||| ||  | ||||||| ||||| | | |||     ||| || ||||||| |  ||||||||| | ||| |||||| |||||| ||||||||||  |||    
T  10205099 aaaacaacatcttggaatgcattcctttctgtgatggctcgtcctatatgaagagattcgatgtgaaaacatatatagttgatttggtagaatactagtg 10205198  T
Q  330 ttatgttctcttcattcttttgaattttcaaa 361  Q
    || |||||||||||||||||||| ||||||||    
T  10205199 ttgtgttctcttcattcttttgagttttcaaa 10205230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 121 - 345
Target Start/End: Original strand, 32123684 - 32123908
Alignment:
Q  121 aagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtagg 220  Q
    |||||||||| |||  | |||||||||  | |||||| |||||||| |||| ||||||||||| | |||||| |||||||  || | | || ||||||||    
T  32123684 aagatgagtgtgacaaaggggaatgcatttttaagatgttgttttgagcttgatcatgctcctttatcaattcaaacttgacagatagtagagcagtagg 32123783  T
Q  221 agtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtaga 320  Q
    | ||||||||||||||| |||| |||| ||||| | | ||||   | ||||| | ||||| || ||||||||| |||||||||||| |||||| |||| |    
T  32123784 attaagttcaaaagaatatattagaatgcattcttttttgtcatgaatcatcctgtatgaagggattcgatgtgataacctatatagttgatttggtata 32123883  T
Q  321 atacatgtgttatgttctcttcatt 345  Q
    |||||  |||| |||||||||||||    
T  32123884 atacaattgttgtgttctcttcatt 32123908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 12504512 - 12504428
Alignment:
Q  265 tactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttt 349  Q
    |||||||| ||| ||| |||||||||||| | ||| |||||| ||||||   ||||||||||||||| |||||||||||||||||    
T  12504512 tactcatcctatgtgaaggaattcgatgtgaaaacttatatagttgatttaatagaatacatgtgttgtgttctcttcattcttt 12504428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 12504630 - 12504523
Alignment:
Q  42 aaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatc-aaatcccttgtataagatgagtgggacgtaagg 140  Q
    |||||||||| ||| |||||| ||||||||||||| |   ||||||| |||||| ||||||||||| |  ||  ||||||| |||||||||| ||||||     
T  12504630 aaaagtcaaagaatgaagagagcacaacatgtattcttgcgaatcaactatataagttttcacatcgacttcttttgtataggatgagtggggcgtaaga 12504531  T
Q  141 gaatgcac 148  Q
    ||||||||    
T  12504530 gaatgcac 12504523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 328
Target Start/End: Complemental strand, 10204977 - 10204931
Alignment:
Q  282 ggaattcgatgttataacctatatatttgattcggtagaatacatgt 328  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||    
T  10204977 ggaattcgatgttgtaacctatatagttgattcggcagaatacatgt 10204931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 29370555 - 29370614
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaataca 325  Q
    |||||||||||| || | |||||||||| | |||||||||| |||||| |||||||||||    
T  29370555 actcatcttatacgaagcaattcgatgtgaaaacctatatagttgatttggtagaataca 29370614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 32108680 - 32108739
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaataca 325  Q
    |||||||||||| ||  ||||||||||| | |||||||||| |||| |||||||||||||    
T  32108680 actcatcttatacgaatgaattcgatgtgagaacctatatagttgactcggtagaataca 32108739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 12504416 - 12504497
Alignment:
Q  37 ctttgaaaagtcaaataataaagagaacaca--acatgtattttactgaatcaagtatatatgttttcacatcaaatccctt 116  Q
    |||||| |||||||| ||| |||||||||||  ||||||||| || | |||||| |||||| ||||||||||| ||| ||||    
T  12504416 ctttgataagtcaaagaatgaagagaacacaacacatgtattctattaaatcaactatataagttttcacatcgaattcctt 12504497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 328
Target Start/End: Original strand, 12784966 - 12785028
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgt 328  Q
    |||||||||||| || | |||| ||||| | ||| |||||| |||||||||||||||||||||    
T  12784966 actcatcttatacgaagaaatttgatgtgaaaacgtatatagttgattcggtagaatacatgt 12785028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 29370628 - 29370499
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggacgtaagggaatgcacatctaag 155  Q
    |||||||||||   |||||| |||  |||||| |||||| ||||||||||| |||  ||| |||||||||||||| |||  |   |||||||  ||||||    
T  29370628 aagagaacacattttgtattctaccaaatcaactatataggttttcacatcgaattgcttcgtataagatgagtgtgacaaacatgaatgcatttctaag 29370529  T
Q  156 atattgttttgtgcttaatcatgctcctct 185  Q
    || |||||||| |||| ||| |||||||||    
T  29370528 atgttgttttgagcttgatcgtgctcctct 29370499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 53 - 357
Target Start/End: Original strand, 19243136 - 19243441
Alignment:
Q  53 aataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggacgtaagggaatgcacatc 151  Q
    ||||||||||||||||||||||||||||  |||||| |||||| ||||||||||  ||| |||| ||||||||||| || |||  | |  ||||||  ||    
T  19243136 aataaagagaacacaacatgtattttaccaaatcaattatataggttttcacattcaattccttcgtataagatgaatgtgacaaacgaaaatgcatttc 19243235  T
Q  152 taagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacat 251  Q
    |||||| ||||||||||||| ||||||||| ||||||||||||||||||| | ||||||| ||||||||| |||| |||||||||||||||||||| |||    
T  19243236 taagatgttgttttgtgcttgatcatgctcatctgtcaattgaaacttgtcaattggcagggcagtaggattaaggtcaaaagaatgtattggaatgcat 19243335  T
Q  252 tcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttg 351  Q
    || | | ||||   ||||||||||||||||| |||| ||||| |||||||||| | || ||| ||||||||||||||||| |||||||||||||||||||    
T  19243336 tcctttttgtcatgactcatcttatatgaggcaatttgatgtgataacctataaagttaatttggtagaatacatgtgttgtgttctcttcattcttttg 19243435  T
Q  352 aatttt 357  Q
    ||||||    
T  19243436 aatttt 19243441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 60 - 361
Target Start/End: Original strand, 20244530 - 20244837
Alignment:
Q  60 agaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaa-tcccttgtataagatgagtgggac-gtaagggaatgcacatctaagat 157  Q
    ||||||||||||||||| | | ||||||| | |||||||||||||| |||| ||| | ||||||||||||||  ||   |||||||||||  ||||||||    
T  20244530 agaacacaacatgtattctgccgaatcaactgtatatgttttcacaccaaagtccttcgtataagatgagtgtcacaaaaagggaatgcaactctaagat 20244629  T
Q  158 attgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatat 257  Q
     ||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |  |||||| ||||||||||||||||||||| ||| ||||| | |    
T  20244630 tttgttttgtgcttgatcatgctcctctgtcaattgaaacttgtcaattggcagggttgtaggattaagttcaaaagaatgtattgaaatgcattccttt 20244729  T
Q  258 atgtccctactcatcttatatgagggaattcgatgttataacctatatat----ttgattcggtagaatacatgtgttatgttctcttcattcttttgaa 353  Q
     ||||   |||||  ||||||||||||||||||||| | ||| |||||||    |||||| |||| |||||||||||| |||||||||||||||| |||     
T  20244730 ttgtcgtgactcaatttatatgagggaattcgatgtaagaacttatatatatagttgatttggtataatacatgtgttgtgttctcttcattcttctgag 20244829  T
Q  354 ttttcaaa 361  Q
    ||||||||    
T  20244830 ttttcaaa 20244837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 60 - 361
Target Start/End: Original strand, 22138514 - 22138821
Alignment:
Q  60 agaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaa-tcccttgtataagatgagtgggac-gtaagggaatgcacatctaagat 157  Q
    ||||||||||||||||| | | ||||||| | |||||||||||||| |||| ||| | ||||||||||||||  ||   |||||||||||  ||||||||    
T  22138514 agaacacaacatgtattctgccgaatcaactgtatatgttttcacaccaaagtccttcgtataagatgagtgtcacaaaaagggaatgcaactctaagat 22138613  T
Q  158 attgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatat 257  Q
     ||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |  |||||| ||||||||||||||||||||| ||| ||||| | |    
T  22138614 tttgttttgtgcttgatcatgctcctctgtcaattgaaacttgtcaattggcagggttgtaggattaagttcaaaagaatgtattgaaatgcattccttt 22138713  T
Q  258 atgtccctactcatcttatatgagggaattcgatgttataacctatatat----ttgattcggtagaatacatgtgttatgttctcttcattcttttgaa 353  Q
     ||||   |||||  ||||||||||||||||||||| | ||| |||||||    |||||| |||| |||||||||||| |||||||||||||||| |||     
T  22138714 ttgtcgtgactcaatttatatgagggaattcgatgtaagaacttatatatatagttgatttggtataatacatgtgttgtgttctcttcattcttctgag 22138813  T
Q  354 ttttcaaa 361  Q
    ||||||||    
T  22138814 ttttcaaa 22138821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 57 - 357
Target Start/End: Original strand, 24560161 - 24560462
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatcccttgt-ataagatgagtgggacgtaagggaatgcacatctaag 155  Q
    ||||||||||||||||||||||||  |||||| |||||| ||||||||||| ||| |||| | ||| |||||| |  ||  |||||||||||| ||||||    
T  24560161 aagagaacacaacatgtattttaccaaatcaactatataggttttcacatcgaattcctttttataggatgagcgtcacagaagggaatgcacttctaag 24560260  T
Q  156 atattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcat 255  Q
     | |||||||||| || |||||||||| ||||||||||||||||||||||||| || |||||| || ||||| ||||||||| |||||| |||||||| |    
T  24560261 gtgttgttttgtgtttgatcatgctccgctgtcaattgaaacttgttagttggtagggcagtaagattaagtacaaaagaatatattgggatacattcct 24560360  T
Q  256 atatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaatt 355  Q
     |||||    ||||||| ||||||| ||  ||| |||| |||||||||| | ||| || | || |||||||||||| ||||||||||||||| |||| ||    
T  24560361 ttatgtggtgactcatcctatatgaaggggttcaatgtgataacctataaagttgttttgctataatacatgtgttgtgttctcttcattctgttgagtt 24560460  T
Q  356 tt 357  Q
    ||    
T  24560461 tt 24560462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 38 - 375
Target Start/End: Complemental strand, 18743857 - 18743528
Alignment:
Q  38 tttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaat-cccttgtataagatgagtgggacgt 136  Q
    ||||||||||||||  || ||||||||||||||| ||||||||  |||| | || ||||| ||||||||| ||| ||||||||||| ||||||| ||||     
T  18743857 tttgaaaagtcaaaatattaagagaacacaacatatattttacgaaatctaatacatatgatttcacatcgaattcccttgtataaaatgagtgtgacga 18743758  T
Q  137 aagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaa 236  Q
    ||||||||| || ||||||||  ||||||||| || |||||||||||||||||||||||| ||||       || |||| ||||| | | | ||||||||    
T  18743757 aagggaatgtacttctaagatgctgttttgtgtttgatcatgctcctctgtcaattgaaaattgt-------caatgcattaggattgactccaaaagaa 18743665  T
Q  237 tgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgtt 336  Q
    | ||||||||||||||| | | | |  |||||||| |||||||||||||||| |||| | ||  |||||| ||||||  ||||||| |||||||  || |    
T  18743664 tatattggaatacattcctttttattactactcattttatatgagggaattcaatgtgagaatttatatagttgattttgtagaatgcatgtgt--tggt 18743567  T
Q  337 ctcttcattcttttgaattttcaaatgatgctgcaaatc 375  Q
    ||||||||||||| || |||||||  || ||||||||||    
T  18743566 ctcttcattctttcgacttttcaatggacgctgcaaatc 18743528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 118 - 271
Target Start/End: Original strand, 8711292 - 8711445
Alignment:
Q  118 tataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagt 217  Q
    ||||||||||||| ||| |||||||||| || |||||||||||||||||| ||| |||||||||||||||||||||||| |||| ||||| ||| |||||    
T  8711292 tataagatgagtgtgacataagggaatgtacctctaagatattgttttgtacttgatcatgctcctctgtcaattgaaatttgtcagttgacagggcagt 8711391  T
Q  218 aggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcat 271  Q
    | || ||||||||||| ||  | ||||||| ||||| | | |||| ||||||||    
T  8711392 aagattaagttcaaaacaaccttttggaatgcattcttgtttgtcactactcat 8711445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 174 - 306
Target Start/End: Complemental strand, 22962182 - 22962050
Alignment:
Q  174 tcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatct 273  Q
    |||| ||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||| ||| ||||||||  ||||| | | |||| ||||||||||    
T  22962182 tcatactcctctattaattgaaacttgttagttggcagggcagtaggattaagttcaaaaaaatatattggaaagcattcgtgtttgtcactactcatct 22962083  T
Q  274 tatatgagggaattcgatgttataacctatata 306  Q
    |||||||| ||||||||||| | ||||||||||    
T  22962082 tatatgagagaattcgatgtgagaacctatata 22962050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 174 - 306
Target Start/End: Original strand, 23826211 - 23826343
Alignment:
Q  174 tcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatct 273  Q
    |||| ||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||| ||| ||||||||  ||||| | | |||| ||||||||||    
T  23826211 tcatactcctctattaattgaaacttgttagttggcagggcagtaggattaagttcaaaaaaatatattggaaagcattcgtgtttgtcactactcatct 23826310  T
Q  274 tatatgagggaattcgatgttataacctatata 306  Q
    |||||||| ||||||||||| | ||||||||||    
T  23826311 tatatgagagaattcgatgtgagaacctatata 23826343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 177
Target Start/End: Original strand, 2402543 - 2402664
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatc-ccttgtataagatgagtgggacgtaagggaatgcacatctaag 155  Q
    |||||||||||||||| ||| | |  |||||  |||||| ||||||||||| |||  |||||||||||||||||| ||||||||||||||||| ||||||    
T  2402543 aagagaacacaacatgcattatgcaaaatcagctatataggttttcacatcgaatttccttgtataagatgagtgagacgtaagggaatgcacctctaag 2402642  T
Q  156 atattgttttgtgcttaatcat 177  Q
    || ||||||||||||| |||||    
T  2402643 atgttgttttgtgcttgatcat 2402664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 5972830 - 5972747
Alignment:
Q  118 tataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgt 201  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||||||| ||| ||||||||| |||||||||||||| ||||    
T  5972830 tataagatgagtgtgacataagggaatgcacctctaagatattgttttgtacttgatcatgctcttctgtcaattgaaatttgt 5972747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 21864782 - 21864596
Alignment:
Q  32 agattctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtg 130  Q
    |||||||||||||||||||| ||| ||||||||| |||||||||| ||   |||||||| |||| ||||||||||| ||| |||| ||||||||| | ||    
T  21864782 agattctttgaaaagtcaaagaatgaagagaaca-aacatgtattctagcaaatcaagtttataggttttcacatcgaattccttcgtataagataaatg 21864684  T
Q  131 ggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagta 218  Q
      || |||||||| |||| |||||||| ||  |||||  |  ||| ||||| ||||||||||||||| ||| ||||||||| ||||||    
T  21864683 tcacataagggaaagcacctctaagatgttcctttgtattagatcgtgctcttctgtcaattgaaacatgtcagttggcagagcagta 21864596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 359
Target Start/End: Original strand, 33200822 - 33201022
Alignment:
Q  163 tttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtc 262  Q
    |||| |||| ||||| ||||||||||||||||||||||| ||||||||| |||||| || ||||||||||  ||  | |||| || ||||| | |||||     
T  33200822 tttgagcttgatcatactcctctgtcaattgaaacttgtcagttggcagggcagtaagattaagttcaaagcaacctcttggcatgcattcctttatgtg 33200921  T
Q  263 cctactcatcttatatgagggaattcgatgttataacctata----tatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttc 358  Q
       ||||||||||||||||||||||| |||| | ||  ||||    || || ||| ||||||||||| ||||| ||||||||| |||||||||| |||||    
T  33200922 atgactcatcttatatgagggaattctatgtcaaaatttatatagttaattaatttggtagaatacaagtgttgtgttctcttaattcttttgagttttc 33201021  T
Q  359 a 359  Q
    |    
T  33201022 a 33201022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 168 - 361
Target Start/End: Complemental strand, 21864517 - 21864324
Alignment:
Q  168 gcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctac 267  Q
    |||| ||||||| ||||| ||||||||||||||| |||||| || |||||| || |||||||||   ||  | ||||||| ||||| | |||||    ||    
T  21864517 gcttgatcatgcacctctctcaattgaaacttgtcagttggtagggcagtaagattaagttcaacgcaacctcttggaatgcattcctttatgtgatgac 21864418  T
Q  268 tcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    ||||||||||||||| |||||||||| | ||  |||||| |||||| | || ||||||| | || ||| |||||||||||||||| ||||||||    
T  21864417 tcatcttatatgaggtaattcgatgtgagaatttatatagttgatttgatataatacatttattgtgtcctcttcattcttttgacttttcaaa 21864324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 361
Target Start/End: Complemental strand, 30764713 - 30764517
Alignment:
Q  163 tttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtc 262  Q
    |||| |||| ||||||||||||||||||||||||||||| |||||| || | |  | || || |||||||  ||  | ||||||| ||||| | | |||     
T  30764713 tttgagcttgatcatgctcctctgtcaattgaaacttgtcagttggtagggaaacaagattaggttcaaagcaacttgttggaatgcattcctttttgtg 30764614  T
Q  263 cctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
       ||||| | ||||||||||||||| |||| | ||  |||||| ||||||  |||||||||||||||  |||||||||||||||||||| ||||||||    
T  30764613 atgactcaccgtatatgagggaattctatgtgagaatttatatagttgattttgtagaatacatgtgt--tgttctcttcattcttttgacttttcaaa 30764517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 17464996 - 17464916
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattctt 348  Q
    |||||| ||||||||||||||||||||  ||||| |||||| ||||||  || ||||||||||||| ||||||||||||||||    
T  17464996 actcatattatatgagggaattcgatg--ataacatatatagttgattttgttgaatacatgtgttgtgttctcttcattctt 17464916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 293
Target Start/End: Original strand, 14096084 - 14096213
Alignment:
Q  164 ttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtcc 263  Q
    |||| ||| |||||||| |||| ||||||||||||||| ||||||| | |||||| || ||| ||||||| ||  | ||||||| ||||||| | ||||     
T  14096084 ttgtacttgatcatgcttctctttcaattgaaacttgtcagttggctgggcagtaagattaaattcaaaacaacctcttggaatgcattcatgtttgtca 14096183  T
Q  264 ctactcatcttatatgagggaattcgatgt 293  Q
    |||||||||| |||| || ||||| |||||    
T  14096184 ctactcatctaatattagtgaatttgatgt 14096213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 23607796 - 23607855
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaataca 325  Q
    ||||||||||||||| |||||||||||| | |||||||||| ||||||| ||||||||||    
T  23607796 actcatcttatatgaaggaattcgatgtgaaaacctatatagttgattcagtagaataca 23607855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 33200443 - 33200613
Alignment:
Q  42 aaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgtttt-cacatcaaatccctt-gtataagatgagtgggacgtaag 139  Q
    ||||||||||  || || ||||||||||||||||| |||   ||||| | |||| ||||| ||| || ||| |||| |||||||| |||||  ||  |||    
T  33200443 aaaagtcaaaagattaatagaacacaacatgtattctaccatatcaactttataagtttttcacttcgaattccttcgtataagaggagtgtcaccgaag 33200542  T
Q  140 ggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggca 210  Q
    |||| |||| |||||||  || ||||| | || ||| ||||||||||||||||||||||||| ||||||||    
T  33200543 ggaaagcacctctaagaggtttttttgagtttgatcgtgctcctctgtcaattgaaacttgtcagttggca 33200613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 24560218 - 24560145
Alignment:
Q  282 ggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaatttt 357  Q
    |||||||||||| | |||||||||| |||||| |||| ||||||  |||| |||||||||||||||||||| ||||    
T  24560218 ggaattcgatgtgaaaacctatatagttgatttggtaaaataca--tgttgtgttctcttcattcttttgagtttt 24560145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 21864689 - 21864793
Alignment:
Q  270 atcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaatgatgctg 369  Q
    |||||||| || |||||||||||| | |||||||| | |||||| | |||||||||||   | |||||||||||||| ||||| |||||||| ||  |||    
T  21864689 atcttatacgaaggaattcgatgtgaaaacctataaacttgatttgctagaatacatg---tttgttctcttcattc-tttgacttttcaaa-gaatctg 21864783  T
Q  370 caaatctcta 379  Q
    ||||||||||    
T  21864784 caaatctcta 21864793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 30764964 - 30764870
Alignment:
Q  37 ctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatc-aaatcccttgtataagatgagtg 130  Q
    |||||||||||||||  || |||||||||||||||||||| | |  ||| |  |||||| ||||||||||| || ||| ||||||| ||||||||    
T  30764964 ctttgaaaagtcaaaagattaagagaacacaacatgtattctccataattagctatataggttttcacatctaattcctttgtataggatgagtg 30764870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 3097400 - 3097360
Alignment:
Q  32 agattctttgaaaagtcaaataataaagagaacacaacatg 72  Q
    |||||||||||||||||||| ||| ||||||| ||||||||    
T  3097400 agattctttgaaaagtcaaagaatgaagagaatacaacatg 3097360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 17465029 - 17465102
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctctt 341  Q
    ||||||||||||||| |||||||||| | ||||| ||||||  |||||| | | ||||||  ||||||||||||||    
T  17465029 actcatcttatatgaaggaattcgatatcataacttatataggtgattctgcataataca--tgttatgttctctt 17465102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 20241910 - 20241870
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatata 306  Q
    |||| ||||||||||||||||||||||| ||||| ||||||    
T  20241910 actcgtcttatatgagggaattcgatgtgataacatatata 20241870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 22135894 - 22135854
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatata 306  Q
    |||| ||||||||||||||||||||||| ||||| ||||||    
T  22135894 actcgtcttatatgagggaattcgatgtgataacatatata 22135854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 22143247 - 22143207
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatata 306  Q
    |||| ||||||||||||||||||||||| ||||| ||||||    
T  22143247 actcgtcttatatgagggaattcgatgtgataacatatata 22143207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 23607855 - 23607795
Alignment:
Q  71 tgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtg 130  Q
    |||||| ||||||||||| |||||| ||||||||||| ||| ||||  |||||||||||||    
T  23607855 tgtattctactgaatcaactatataggttttcacatcgaattccttcatataagatgagtg 23607795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 36 - 361
Target Start/End: Original strand, 23553707 - 23554034
Alignment:
Q  36 tctttgaaaagtcaaa-taataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtggga 133  Q
    |||||||||| ||||| ||||||||||| |||| |||| |||||||  |||||| || ||||||||||||||| ||| | || |||||||||||||| ||    
T  23553707 tctttgaaaactcaaaataataaagagagcacatcatgcattttaccaaatcaactaaatatgttttcacatcgaattctttcgtataagatgagtgtga 23553806  T
Q  134 cgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaa 233  Q
    || | |  |||| |  |||||||| ||||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||||| || || |||||||||||    
T  23553807 cgaacgaaaatgtatttctaagatgttgttttgtgcttgatcatactcctctgtcaatagaaacttgtcagttggcagtgcaatatgattaagttcaaaa 23553906  T
Q  234 gaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttat 333  Q
    |||||||||||||| ||||| | |  ||| | |||||||||||||||||||||| ||||| |||||||||||| |||||| | ||||||||||||||| |    
T  23553907 gaatgtattggaatgcattccttttagtcacgactcatcttatatgagggaatttgatgtgataacctatatagttgatttgctagaatacatgtgttgt 23554006  T
Q  334 gttctcttcattcttttgaattttcaaa 361  Q
    |||| ||| |||||||||| ||||||||    
T  23554007 gttccctttattcttttgagttttcaaa 23554034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 37 - 377
Target Start/End: Original strand, 7066984 - 7067331
Alignment:
Q  37 ctttgaaaagtcaaat-aataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaat-cccttgtataagatgagtgggac 134  Q
    |||||||||||||||  ||| ||||||||||||| ||||||||||  |||||| |||||||||||||||||   || ||||||||||| ||||||| |||    
T  7066984 ctttgaaaagtcaaaagaatgaagagaacacaacttgtattttaccaaatcaactatatatgttttcacatagtattcccttgtataatatgagtgtgac 7067083  T
Q  135 gtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaag 234  Q
    | ||||||||| ||   |||||| ||||| ||||| | ||||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||    
T  7067084 gaaagggaatgtaccattaagatgttgttatgtgcgtgatcatgctcctctgtcaattgaaacttgtcagttggcagtgcaatagaattaagttcaaaag 7067183  T
Q  235 aatgtattggaatacattcatatatgtccctactcatc---ttatatgagggaattcgatgttataacc--tatatatttgattcggtagaatacatgtg 329  Q
    ||| |||||||||||||||   | |||  ||||| |||   |||||||||||||||||| |   |||||  ||||||||| ||| || ||||||||||||    
T  7067184 aatatattggaatacattcccttttgttactacttatctaattatatgagggaattcgacgcggtaacctatatatattttatttggaagaatacatgtg 7067283  T
Q  330 ttatgttctcttcattcttttgaattttcaaatgatgctgcaaatctc 377  Q
    || |||||||||||||||||| | ||||||||  ||||||||||||||    
T  7067284 ttgtgttctcttcattcttttaagttttcaaagtatgctgcaaatctc 7067331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 57 - 374
Target Start/End: Complemental strand, 41935217 - 41934887
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaat-cccttgtataagatgagtgggacgtaagggaatgcacatctaag 155  Q
    ||||||||||| | ||||||  ||  |||||| |||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||||| ||||||    
T  41935217 aagagaacacatcttgtattcaaccaaatcaactatatatgttttcacatcgaattcccttgtataagatgagtgagatgtaagggaatgcacctctaag 41935118  T
Q  156 atattgttttgt------------gcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattg 243  Q
    || || |||| |            |||| ||||||||  ||||||||||||||||||| ||||||||||||||||| | |||||| ||||||||||| ||    
T  41935117 atgtttttttttttttttttttctgcttgatcatgcttttctgtcaattgaaacttgtcagttggcagtgcagtagaattaagttaaaaagaatgtactg 41935018  T
Q  244 gaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttca 343  Q
    |||| ||||||| || |||| ||||||||||||| ||||||||||||||| | ||| |||||| |||||| |||||||| ||  |||| |||||||||||    
T  41935017 gaatgcattcatttacgtccatactcatcttatacgagggaattcgatgtgaaaacatatatagttgatttggtagaatgcaactgttgtgttctcttca 41934918  T
Q  344 ttcttttgaattttcaaatgatgctgcaaat 374  Q
    ||||||||| |||||||||||||||| ||||    
T  41934917 ttcttttgagttttcaaatgatgctgtaaat 41934887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 83 - 353
Target Start/End: Original strand, 3925096 - 3925364
Alignment:
Q  83 aatcaagtatatatgttttcacatcaaa-tcccttgtataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctc 181  Q
    |||||| |||||||||||||||||| |  || ||  ||||||||||||||||||||||||| ||||| |||||||| || |||||||||| |||||| ||    
T  3925096 aatcaactatatatgttttcacatcgatctctctgatataagatgagtgggacgtaagggattgcacctctaagatgttattttgtgcttgatcatgttc 3925195  T
Q  182 ctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgag 281  Q
     | |||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||  |||| | ||  ||||||||| |||||||||||    
T  3925196 ttatgtcaattgaaacttgttagttggcaatgcggtaggattaagttcaaaagaatgtattggaatgtattcctttacatccctactcttcttatatgag 3925295  T
Q  282 ggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaa 353  Q
     ||||||||||| | ||| |||||| |||||| |||||||||||    || |||||||||||||||||||||    
T  3925296 cgaattcgatgtga-aacatatatagttgatttggtagaataca--aattgtgttctcttcattcttttgaa 3925364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 57 - 255
Target Start/End: Original strand, 10546014 - 10546211
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggacgtaagggaatgcacatctaag 155  Q
    |||||||| ||||||| ||||||  ||||||| |||||  ||||||||||| ||| |||| ||||| |||||||  ||| ||||||||||||| ||||||    
T  10546014 aagagaacgcaacatgcattttagcgaatcaactatat--gttttcacatcgaattcctttgtatatgatgagtatgacttaagggaatgcacctctaag 10546111  T
Q  156 atattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcat 255  Q
    || ||||||||||| | ||||||||||||||||||||||||||||| |||||||| |||||||  | |||||||||||||||||||||||||||||||||    
T  10546112 atgttgttttgtgcatgatcatgctcctctgtcaattgaaacttgtcagttggcattgcagtaaaattaagttcaaaagaatgtattggaatacattcat 10546211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 27317619 - 27317459
Alignment:
Q  117 gtataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcag 216  Q
    |||||||||||||||||| ||||||||||||| |||||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||| | ||    
T  27317619 gtataagatgagtgggacataagggaatgcacctctaagatgttgttttgtgcttgaacatgctcctctgtcaattgaaacttgtcagttggcagggtag 27317520  T
Q  217 taggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttata 277  Q
    ||||| ||||||||||||||| ||||| ||| ||||| | | |||  ||||||||||||||    
T  27317519 taggattaagttcaaaagaatatattgtaatgcattcctttttgttactactcatcttata 27317459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 36 - 211
Target Start/End: Original strand, 31267402 - 31267578
Alignment:
Q  36 tctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggac 134  Q
    ||||||||||||||||  || |||||||||||||||||||| | |  |||||  |||||||||| ||||||| ||| |||| |||||||| |||||  ||    
T  31267402 tctttgaaaagtcaaaagattaagagaacacaacatgtattatgcataatcatctatatatgttatcacatcgaattccttcgtataagacgagtgtcac 31267501  T
Q  135 gtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcag 211  Q
    | |||||||||||| |||||||  || ||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  31267502 gaaagggaatgcacctctaagaggttcttttgagcttgatcatgctcctctgtcaattgaaacttgttagttggcag 31267578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 53 - 247
Target Start/End: Complemental strand, 16886366 - 16886169
Alignment:
Q  53 aataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatc-aaatcccttgtataagatgagtgggacgtaagggaatgcacatc 151  Q
    ||||||||||||||||||||||||||||  |||||| |||||| ||||||||||| || ||| |||||||||||||||| |||| || ||||||||| |     
T  16886366 aataaagagaacacaacatgtattttaccaaatcaactatataggttttcacatcgaattcctttgtataagatgagtgtgacgaaacggaatgcacctt 16886267  T
Q  152 taagatattgttttgtg-cttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagt-aagttcaaaagaatgtattggaat 247  Q
    |||||| ||||| ||||  || || |||||||||||||||||||||||||| |||||| ||  || || || | |||||| |||||||||||||||||    
T  16886266 taagatcttgttatgtgaattgattatgctcctctgtcaattgaaacttgtcagttggtaggacaatatgattaaagttccaaagaatgtattggaat 16886169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 36 - 261
Target Start/End: Complemental strand, 7414095 - 7413868
Alignment:
Q  36 tctttgaaaagtcaaataataaagaga-acacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtggga 133  Q
    ||||| ||||||||||  || |||||| || ||||||||||| ||| |||| |  |||||| ||| ||||||||||| |||| ||||| ||||||||  |    
T  7414095 tcttttaaaagtcaaaagattaagagacacgcaacatgtattctacagaattagctatataagttatcacatcaaattccttcgtatatgatgagtgtca 7413996  T
Q  134 cgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaa 233  Q
    ||  ||||||||||| |||||||| || ||||| |||| ||||||||||||||||||||||||||||| ||||||||| ||| || || ||||||||||     
T  7413995 cgacagggaatgcacctctaagatgttattttgagcttgatcatgctcctctgtcaattgaaacttgtaagttggcagggcaataagattaagttcaaag 7413896  T
Q  234 gaatgtattggaatacattcatatatgt 261  Q
     ||  ||||||||| ||||||| |||||    
T  7413895 caacctattggaatgcattcatgtatgt 7413868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 26926960 - 26926725
Alignment:
Q  20 tagagatttccaagattctttgaaaagtcaaat-aataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-g 117  Q
    ||||||||| ||  || |||||||||||||||  ||  ||||||||||||||| |||| |||  |||||| || ||| ||||||||||| ||| | || |    
T  26926960 tagagatttgcagcatcctttgaaaagtcaaaagaacgaagagaacacaacatttattctacataatcaactacataggttttcacatcgaattctttcg 26926861  T
Q  118 tataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagt 217  Q
    |||| ||||||||  || || |||||||||| |||||||| |||||||| ||||  |||||||||||||||||||||||||||| ||||||||   ||||    
T  26926860 tatatgatgagtgtcacatatgggaatgcacttctaagatgttgttttgagcttgctcatgctcctctgtcaattgaaacttgtcagttggcatgacagt 26926761  T
Q  218 aggagtaagttcaaaagaatgtattggaatacattc 253  Q
    |||| |||||| |||| ||| |||||| || |||||    
T  26926760 aggattaagtttaaaataatatattgggatgcattc 26926725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 141 - 291
Target Start/End: Complemental strand, 1321422 - 1321273
Alignment:
Q  141 gaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgta 240  Q
    |||||||  |||||||| |||||||| |||| ||||||||||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||| ||    
T  1321422 gaatgcatttctaagatgttgttttgagcttgatcatgctcctctgtcaattgaaacttgtcagttggtagggcagtaggattaagttcaaaagaatata 1321323  T
Q  241 ttggaatacattcatatatgtccctactcatcttatatgagggaattcgat 291  Q
    ||||||| ||||  | | |||| | ||||||||||||  ||||||||||||    
T  1321322 ttggaatgcatttgtgtttgtcac-actcatcttatacaagggaattcgat 1321273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 12309463 - 12309377
Alignment:
Q  113 ccttgtataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaactt 199  Q
    ||||||||||||| |||| |||| |||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  12309463 ccttgtataagataagtgtgacgaaagggaatgcacctctaagatgttgttttgtgcttgatcatgctcctctgtcaattgaaactt 12309377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 152 - 361
Target Start/End: Complemental strand, 36338209 - 36338002
Alignment:
Q  152 taagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacat 251  Q
    |||||| ||| |||| || ||||||||||| | |||||||| ||||||||||||||| |  ||| || || ||||||||||| ||| ||||||||| |||    
T  36338209 taagatgttgctttgggcctaatcatgctcttatgtcaattaaaacttgttagttggtaaggcaataagattaagttcaaaataatatattggaatgcat 36338110  T
Q  252 tcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttg 351  Q
    |||| | ||||  ||| |||||||||||||||||||| |||| | |||||||||| ||| || ||| |||||||     | ||||| |||||||||||||    
T  36338109 tcatttttgtcaatacgcatcttatatgagggaattcaatgtgagaacctatatagttggtttggttgaataca--aaatgtgttcacttcattcttttg 36338012  T
Q  352 aattttcaaa 361  Q
    | ||||||||    
T  36338011 agttttcaaa 36338002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 177 - 352
Target Start/End: Original strand, 150575 - 150750
Alignment:
Q  177 tgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttat 276  Q
    ||||||||||||||||||||||||| | || |||   ||||| || |||  ||||| |||  | ||||||| ||||||| | |||    |||  ||||||    
T  150575 tgctcctctgtcaattgaaacttgtcaatttgcaagacagtaagattaaactcaaaggaacctcttggaatgcattcatttttgtgatgacttgtcttat 150674  T
Q  277 atgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttga 352  Q
    ||||||||||||||||| ||||| |||||| ||||||  |||||||||||||||| ||||||||| ||||||||||    
T  150675 atgagggaattcgatgtgataacatatataattgattttgtagaatacatgtgttgtgttctctttattcttttga 150750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 83 - 325
Target Start/End: Complemental strand, 29656325 - 29656083
Alignment:
Q  83 aatcaagtatatatgttttcacatcaaatcccttg-tataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctc 181  Q
    |||||| |||||| ||| ||||||| ||| ||||  ||||||||||||| |||  |   |||||||  |||||||| || ||||| |||| |||| ||||    
T  29656325 aatcaactatataggttctcacatcgaattccttcatataagatgagtgtgacaaacatgaatgcatttctaagatgttcttttgagcttgatcaagctc 29656226  T
Q  182 ctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgag 281  Q
    | |||||||||||||||||| ||||||||| | | || || ||||||||||| ||| ||||| ||| ||||| | | || | | |||||| |||||||||    
T  29656225 ccctgtcaattgaaacttgtcagttggcagggaaataagattaagttcaaaataatatattgaaatgcattcttttttggcacaactcattttatatgag 29656126  T
Q  282 ggaattcgatgttataacctatatatttgattcggtagaataca 325  Q
    |||||| |||| |   ||||||||| ||||||| ||||||||||    
T  29656125 ggaatttgatg-tgggacctatatagttgattcagtagaataca 29656083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 266 - 359
Target Start/End: Complemental strand, 5281855 - 5281762
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttca 359  Q
    |||||| |||||||| |||||||||||| ||||| |||||| ||||||  |||||||||||||||| ||||||||| |||||||||| ||||||    
T  5281855 actcattttatatgaaggaattcgatgtgataacatatatagttgattttgtagaatacatgtgttgtgttctcttaattcttttgagttttca 5281762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 3380408 - 3380326
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattctt 348  Q
    |||| ||||||||||||||||||||||| ||||| |||||| || |||  |||||||||||||||| ||||||||||||||||    
T  3380408 actcgtcttatatgagggaattcgatgtgataacatatatagtttattttgtagaatacatgtgttgtgttctcttcattctt 3380326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 266 - 352
Target Start/End: Original strand, 11826462 - 11826548
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttga 352  Q
    ||||||||||||||||| |||||||||| ||||| |||||| ||||||  ||| ||||||| |||| ||||||||||||||||||||    
T  11826462 actcatcttatatgaggtaattcgatgtgataacatatatagttgattatgtaaaatacatatgttgtgttctcttcattcttttga 11826548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 266 - 361
Target Start/End: Original strand, 12083617 - 12083710
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    |||||||||||||||||||||||||||| | ||| ||||||  |||||  | |||||||||||||  |||||||||||||||||||| ||||||||    
T  12083617 actcatcttatatgagggaattcgatgtgaaaacgtatatagatgattttgaagaatacatgtgt--tgttctcttcattcttttgagttttcaaa 12083710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 357
Target Start/End: Original strand, 28067532 - 28067710
Alignment:
Q  177 tgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttat 276  Q
    ||||| ||||||||||||| ||||| |||||||||||||||| || | || | |||  ||  | ||||||| ||||||| | |||    | |||||||||    
T  28067532 tgctcatctgtcaattgaatcttgtcagttggcagtgcagtaagattcagcttaaagcaacctcttggaatgcattcatttttgtgatgattcatcttat 28067631  T
Q  277 atgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaatttt 357  Q
    || ||||||||| |||| | ||||||||||  |||||  |||| ||||||||||  |||||||||||||||||||| ||||    
T  28067632 ataagggaattcaatgtgaaaacctatatagatgattttgtaggatacatgtgt--tgttctcttcattcttttgagtttt 28067710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 7413716 - 7413658
Alignment:
Q  317 tagaatacatgtgttatgttctcttcattcttttgaattttcaaatgatgctgcaaatc 375  Q
    ||||||||||||||| |||||||||||||||||||| |||||||| | |||||||||||    
T  7413716 tagaatacatgtgttgtgttctcttcattcttttgacttttcaaaaggtgctgcaaatc 7413658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 379
Target Start/End: Original strand, 26926849 - 26926960
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaatgat 365  Q
    ||||||| |||| ||  ||||||||||| | ||||||| || ||||||  |||||||| ||||  | |||||||||| ||||||||| |||||||| |||    
T  26926849 actcatcatatacgaaagaattcgatgtgaaaacctatgtagttgattatgtagaataaatgt--tgtgttctcttcgttcttttgacttttcaaaggat 26926946  T
Q  366 gctgcaaatctcta 379  Q
    ||||||||||||||    
T  26926947 gctgcaaatctcta 26926960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 361
Target Start/End: Original strand, 16886289 - 16886382
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    ||||||||||||  | |||||||||||| | |||||||||| |||||| |||| ||||||  |||| ||||||||| |||||||||| ||||||||    
T  16886289 actcatcttatacaaaggaattcgatgtgaaaacctatatagttgatttggtaaaataca--tgttgtgttctctttattcttttgagttttcaaa 16886382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 376
Target Start/End: Complemental strand, 7067078 - 7066970
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaatgat 365  Q
    |||||| |||||  ||||||| | |||| | ||| |||||| |||||| |||| |||||| ||  | |||||||||||||||||||| |||||||| |||    
T  7067078 actcatattatacaagggaatactatgtgaaaacatatatagttgatttggtaaaatacaagt--tgtgttctcttcattcttttgacttttcaaaggat 7066981  T
Q  366 gctgcaaatct 376  Q
    |||||||||||    
T  7066980 gctgcaaatct 7066970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 29656278 - 29656337
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaataca 325  Q
    ||||||||||||||| |||||||||||| | |||||||||| |||||| |||||||||||    
T  29656278 actcatcttatatgaaggaattcgatgtgagaacctatatagttgattaggtagaataca 29656337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 362
Target Start/End: Complemental strand, 28066676 - 28066582
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaat 362  Q
    ||||||| ||||||| ||||||| |||| | |||||||||| ||||||  | ||||||||  |||| ||||||||| |||||||||| |||||||||    
T  28066676 actcatcctatatgaaggaattcaatgtgaaaacctatatagttgattttgcagaataca--tgttgtgttctctttattcttttgagttttcaaat 28066582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 207
Target Start/End: Original strand, 28066599 - 28066753
Alignment:
Q  53 aataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggacgtaagggaatgcacatc 151  Q
    |||||||||||||||||||||||| | |  |||||| |||||| ||||||||||  ||| ||||  |||| ||||||||  ||| |||||||||||| ||    
T  28066599 aataaagagaacacaacatgtattctgcaaaatcaactatataggttttcacattgaattccttcatataggatgagtgtcacggaagggaatgcacctc 28066698  T
Q  152 taagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttg 207  Q
     |||   ||  |||| | || ||| |||||||||||||||||||||| || |||||    
T  28066699 aaag-ggttcctttgagattgatcgtgctcctctgtcaattgaaactagtcagttg 28066753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 218
Target Start/End: Original strand, 12083279 - 12083441
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggacgtaagggaatgcacatctaag 155  Q
    ||||||||||||||||| |||| |  |||||  |||||| ||||||||||| |||  ||| ||||||||||||||  ||| | || ||||||| ||||||    
T  12083279 aagagaacacaacatgtgttttgcaaaatcagttatataggttttcacatcgaatttcttcgtataagatgagtgtcacggatggaaatgcacctctaag 12083378  T
Q  156 atattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagta 218  Q
       || ||||    |  ||| |||||||||||||||||||||| || ||||||||| ||||||    
T  12083379 gggttctttttaattggatcgtgctcctctgtcaattgaaactagtcagttggcagggcagta 12083441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 359
Target Start/End: Original strand, 18150011 - 18150097
Alignment:
Q  273 ttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttca 359  Q
    ||||| || ||||||| || | ||||| |||| | ||||||  ||||||||||| |||| |||||||||||||||||||| ||||||    
T  18150011 ttataagacggaattcaatttgataacatatacagttgattttgtagaatacatatgttgtgttctcttcattcttttgacttttca 18150097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 7413823 - 7413782
Alignment:
Q  177 tgctcctctgtcaattgaaacttgttagttggcagtgcagta 218  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  7413823 tgctcctctgtcaattgaaacttgtcagttggcagggcagta 7413782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 4230184 - 4230230
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgat 312  Q
    |||| ||||||||||||||||||||||| ||||| |||||| |||||    
T  4230184 actcgtcttatatgagggaattcgatgtgataacatatatagttgat 4230230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 5282078 - 5282037
Alignment:
Q  177 tgctcctctgtcaattgaaacttgttagttggcagtgcagta 218  Q
    |||||||||||||||||||||| || ||||||||| ||||||    
T  5282078 tgctcctctgtcaattgaaactagtcagttggcagggcagta 5282037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 11825025 - 11825082
Alignment:
Q  38 tttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatata 95  Q
    ||||||||||||||  || |||||||||||||||||||| | | ||||||| ||||||    
T  11825025 tttgaaaagtcaaaagattaagagaacacaacatgtattatgcagaatcaactatata 11825082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 5282126 - 5282166
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatata 306  Q
    |||||||||||| || |||||||||||| ||||||||||||    
T  5282126 actcatcttatacgaaggaattcgatgtgataacctatata 5282166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 361
Target Start/End: Complemental strand, 11825117 - 11825025
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    ||||||||||||||| | |||||||| | ||||| |||||| ||||||| | | ||||||  |||| ||||||||| | |||||||| ||||||||    
T  11825117 actcatcttatatgaagaaattcgatatcataacttatatagttgattctgcataataca--tgttgtgttctctt-aatcttttgacttttcaaa 11825025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 18149878 - 18149926
Alignment:
Q  37 ctttgaaaagtcaaataataaagagaacacaacatgtattttactgaat 85  Q
    |||||||||||||||  || |||||||||||||||||||| ||| ||||    
T  18149878 ctttgaaaagtcaaaagattaagagaacacaacatgtattatacagaat 18149926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 41934920 - 41934995
Alignment:
Q  57 aagagaacacaaca--tgtattttactgaatcaagtatatatgttttcacatc-aaatcccttgtataagatgagt 129  Q
    ||||||||||||||  || ||| |||  |||||| |||||||||||||||||| || ||||| |||||||||||||    
T  41934920 aagagaacacaacagttgcattctaccaaatcaactatatatgttttcacatcgaattccctcgtataagatgagt 41934995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 57 - 291
Target Start/End: Original strand, 11719105 - 11719340
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccc-ttgtataagatgagtgggacgtaagggaatgcacatctaag 155  Q
    |||||||||||||||||||| | |  |||||| |||||   || ||| ||| ||| || ||||| |||||||||||||||||| ||||||||| ||||||    
T  11719105 aagagaacacaacatgtattctgcaaaatcaactatatgaattctcaaatcgaattccattgtacaagatgagtgggacgtaaaggaatgcacctctaag 11719204  T
Q  156 atattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcat 255  Q
    || || |||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| ||||| |    
T  11719205 atgttattttatgcttgatcatgcttctctgtcaattgaaacttgtcagttggcagtgcagtagtattaagttcaaaagaatgtattggaatgcattcct 11719304  T
Q  256 atatgtccctactcatcttatatgagggaattcgat 291  Q
     || || |||||||||||||||||||||||||||||    
T  11719305 ttacgttcctactcatcttatatgagggaattcgat 11719340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 137 - 361
Target Start/End: Original strand, 12763966 - 12764191
Alignment:
Q  137 aagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaa 236  Q
    |||||||||||| |||||||| |||||||||| || ||||||||||| ||||||||||||||||| |||||| || |||||| || ||||||||||||||    
T  12763966 aagggaatgcacctctaagatgttgttttgtgtttgatcatgctcctttgtcaattgaaacttgtcagttgggagagcagtaagattaagttcaaaagaa 12764065  T
Q  237 tgtattggaatacatt-catatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgt 335  Q
    |||| ||||| ||||| | | || ||| |||||||||||||||||||  |||| |||| | ||  |||||| ||||||  |||||||||  ||||| |||    
T  12764066 tgtaatggaacacattccctttacgtcgctactcatcttatatgaggtcattcaatgtgaaaatatatatagttgatttagtagaatactagtgttctgt 12764165  T
Q  336 tctcttcattcttttgaattttcaaa 361  Q
    ||||||||||||||||| ||||||||    
T  12764166 tctcttcattcttttgagttttcaaa 12764191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 150 - 325
Target Start/End: Complemental strand, 20529524 - 20529349
Alignment:
Q  150 tctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatac 249  Q
    |||||||| |||||||| |||| ||||| || |||||||||||||||||| | ||||||||   |||||  | ||||||||||||||| ||||||||| |    
T  20529524 tctaagatgttgttttgagcttgatcatacttctctgtcaattgaaacttttcagttggcatgccagtacaattaagttcaaaagaatatattggaatgc 20529425  T
Q  250 attcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaataca 325  Q
    |||| | | ||| |||||||||||||||||| |||||||||||| | |||||||||| ||||||||||||||||||    
T  20529424 attcctttttgttcctactcatcttatatgaaggaattcgatgtgagaacctatatagttgattcggtagaataca 20529349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 36 - 253
Target Start/End: Original strand, 23282623 - 23282839
Alignment:
Q  36 tctttgaaaagtca-aataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtggga 133  Q
    |||||||||| ||| || ||| ||||||||||||||||||||||   ||||||  |||||||||||||||||| ||| |||| ||||| ||||||||  |    
T  23282623 tctttgaaaactcacaagaatgaagagaacacaacatgtattttgtcgaatcatctatatatgttttcacatcgaattccttcgtataggatgagtgtca 23282722  T
Q  134 cgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaa 233  Q
    |  |||||||||||| ||||||||   |||||||| || |||||||||| |||||||||||||||||| ||||||||| | |||| |  |||||||||||    
T  23282723 ctaaagggaatgcacttctaagat---gttttgtgattgatcatgctcccctgtcaattgaaacttgtcagttggcagggtagtaaggttaagttcaaaa 23282819  T
Q  234 gaatgtattggaatacattc 253  Q
     ||| ||||||||| |||||    
T  23282820 aaatatattggaatgcattc 23282839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 180 - 361
Target Start/End: Complemental strand, 5305394 - 5305214
Alignment:
Q  180 tcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatg 279  Q
    |||||||||||||||||||||| ||||||||  |||||| || |||||| |||||||| |||||| || ||||| | | |||   || || |||||||||    
T  5305394 tcctctgtcaattgaaacttgtcagttggcaaggcagtaagattaagttaaaaagaatatattgggatgcattcttttttgtgagtagtcgtcttatatg 5305295  T
Q  280 agggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    |||||||||||||| ||||||||||||  |||||| ||| |||||| ||||| |||| ||||||||||||||| ||||||||    
T  5305294 agggaattcgatgtgataacctatata-gtgattcagtataatacaagtgttgtgttttcttcattcttttgagttttcaaa 5305214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 260 - 379
Target Start/End: Original strand, 20988967 - 20989084
Alignment:
Q  260 gtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttca 359  Q
    ||||||||||||| ||||||| || ||| ||||| |||||||||| | |||||||||||||||||||||||  ||||||||||||| |||||||||||||    
T  20988967 gtccctactcatcctatatgaagggatttgatgtgataacctataaagttgattcggtagaatacatgtgt--tgttctcttcattattttgaattttca 20989064  T
Q  360 aatgatgctgcaaatctcta 379  Q
    || ||| |||||||||||||    
T  20989065 aaggatactgcaaatctcta 20989084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 12763822 - 12763949
Alignment:
Q  23 agatttccaagattctttgaaaagtcaaat-aataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatc-aaatcccttgtat 120  Q
    |||||| ||||| ||||||||||||||||  ||| ||||||||||||||||||||||||  |||||| |||||||||||||||||| || ||||||||||    
T  12763822 agatttgcaagactctttgaaaagtcaaaagaatgaagagaacacaacatgtattttacaaaatcaactatatatgttttcacatcgaattcccttgtat 12763921  T
Q  121 aagatgagtgggacgtaagggaatgcac 148  Q
    |||||||||| |||| ||| ||||||||    
T  12763922 aagatgagtgtgacgaaagagaatgcac 12763949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 141 - 280
Target Start/End: Original strand, 18332986 - 18333126
Alignment:
Q  141 gaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgta 240  Q
    |||||||| |||| ||| ||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||||||  | | ||||||||| ||| ||    
T  18332986 gaatgcacctctatgatgttgttttgtgcttgattatgctcctctgtcaattgaaacttgtcagttggcagggcagtaatattgagttcaaaaaaatata 18333085  T
Q  241 ttggaa-tacattcatatatgtccctactcatcttatatga 280  Q
    |||||| |  |||||| || || ||||||||||||||||||    
T  18333086 ttggaattgaattcatttacgtacctactcatcttatatga 18333126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 26617354 - 26617241
Alignment:
Q  32 agattctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatc-aaatcccttgtataagatgagtg 130  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||||||||  |||||| |||||||||||||||||| || ||| || |||| ||||||||    
T  26617354 agattctttgaaaaatcaaagaatgaagagaacacaacatgtattttaccaaatcaactatatatgttttcacatcgaattcctttttataggatgagtg 26617255  T
Q  131 ggacgtaagggaat 144  Q
    || |||||| ||||    
T  26617254 gggcgtaagagaat 26617241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 28276421 - 28276330
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaatttt 357  Q
    ||||||||||||||||||||||| |||| | |||||| | | || ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  28276421 actcatcttatatgagggaattcaatgtgaaaacctaaagagttaattcggtagaatacatgtgttgtgttctcttcattcttttgagtttt 28276330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 20988828 - 20988953
Alignment:
Q  23 agatttccaagattctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaa-tcccttgtata 121  Q
    |||||| |||| ||||||||||||||||| ||||||||||||| |||| ||||||||| ||||||| | |  |||||||||||||||| ||| |||||||    
T  20988828 agatttgcaagcttctttgaaaagtcaaagaataaagagaacataacaagtattttaccgaatcaact-tgaatgttttcacatcaaattcctttgtata 20988926  T
Q  122 agatgagtgggacgtaagggaatgcac 148  Q
     |||||||||  |||||| ||||||||    
T  20988927 ggatgagtggagcgtaagagaatgcac 20988953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 36 - 232
Target Start/End: Original strand, 18878832 - 18879029
Alignment:
Q  36 tctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatcccttg-tataagatgagtgggac 134  Q
    ||||| ||||||||||  || |||||||||||||||||||| | | |||||   |||||| ||||||||||| ||| ||||  |||| ||||||||  ||    
T  18878832 tctttaaaaagtcaaaatattaagagaacacaacatgtattctgcagaatctgctatataggttttcacatcgaattccttcatatatgatgagtgtcac 18878931  T
Q  135 gtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaa 232  Q
    | | |||||||||| | || ||  || ||||| |||| ||| ||||||||||||||||||||||||| ||||||||  || ||| || ||||||||||    
T  18878932 ggatgggaatgcacctataggaggtttttttgagcttgatcgtgctcctctgtcaattgaaacttgtcagttggcaaggccgtaagattaagttcaaa 18879029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 31991639 - 31991557
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattctt 348  Q
    |||| ||||||||||||||||||||||| ||||| |||||| ||||||  |||||||||||||||| |||| |||||||||||    
T  31991639 actcgtcttatatgagggaattcgatgtgataacatatatagttgattttgtagaatacatgtgttgtgttatcttcattctt 31991557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 266 - 360
Target Start/End: Original strand, 18879184 - 18879278
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaa 360  Q
    ||||||| ||||||||| |||||||||| | ||  |||||| ||||||  |||||||||||||| | |||||||||||||||||||| |||||||    
T  18879184 actcatcgtatatgaggtaattcgatgtgagaatttatatagttgattttgtagaatacatgtgctgtgttctcttcattcttttgacttttcaa 18879278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 265 - 379
Target Start/End: Complemental strand, 26617218 - 26617104
Alignment:
Q  265 tactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaatga 364  Q
    |||||||| | ||||| || |||| |||| | ||| |||||| |||||| | ||||||||||||||| |||||||||||||||||||| ||||||||  |    
T  26617218 tactcatcctttatgaagggattcaatgtaagaacttatatagttgatttgctagaatacatgtgttgtgttctcttcattcttttgacttttcaaagaa 26617119  T
Q  365 tgctgcaaatctcta 379  Q
     | ||||||||||||    
T  26617118 agttgcaaatctcta 26617104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 361
Target Start/End: Complemental strand, 28746162 - 28746102
Alignment:
Q  301 tatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    |||||| |||||| | ||||||||||||||| |||||||||||||||||||||||||||||    
T  28746162 tatatagttgatttgatagaatacatgtgttgtgttctcttcattcttttgaattttcaaa 28746102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 323
Target Start/End: Original strand, 44298281 - 44298421
Alignment:
Q  183 tctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagg 282  Q
    ||||| |||||||||||||  |||  ||||||||||||| |||||||||||||||| |||| ||||||||||| ||  || ||   |||||||||| ||     
T  44298281 tctgttaattgaaacttgt--gttaacagtgcagtaggattaagttcaaaagaatggattgaaatacattcatttacatcgctgtccatcttatataaga 44298378  T
Q  283 gaattcgatgttataacctatatat--ttgattcggtagaata 323  Q
    ||||||||||| | ||| |||||||  |||||| |||||||||    
T  44298379 gaattcgatgtgaaaacatatatatagttgatttggtagaata 44298421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 361
Target Start/End: Complemental strand, 12763930 - 12763837
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    ||||||||||||  |||||||||||||| | ||| |||||| ||||||  ||| ||||||  |||| |||||||||||||||||||| ||||||||    
T  12763930 actcatcttatacaagggaattcgatgtgaaaacatatatagttgattttgtaaaataca--tgttgtgttctcttcattcttttgacttttcaaa 12763837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 231
Target Start/End: Complemental strand, 28276782 - 28276586
Alignment:
Q  36 tctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggac 134  Q
    |||||| |||||||||  || |||||||||||||||||||| | | |||| |  |||||| |||  |||||| |||   || ||||| ||||||||  ||    
T  28276782 tctttggaaagtcaaaagattaagagaacacaacatgtattctgccgaattagctatataggttaccacatcgaattgattcgtataggatgagtgtcac 28276683  T
Q  135 gtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaa 231  Q
      |||||||||||| |||||||  || ||||| |||| |||||| |||||| ||||||||||||| | |||| |||| |||||| || | |||||||    
T  28276682 agaagggaatgcacctctaagaggttattttgagcttgatcatgatcctctctcaattgaaacttatcagttagcagcgcagtacgatttagttcaa 28276586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 18879094 - 18879157
Alignment:
Q  168 gcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaa 231  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||| |||||| || |||||||||    
T  18879094 gcttaatcatgctcctatgtcaattgaaacatgtcagttggcagggcagtaagattaagttcaa 18879157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 28746846 - 28746780
Alignment:
Q  32 agattctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgt 98  Q
    |||||||||||||||||||| ||| |||||||||||||||||||| ||   |||||| |||||||||    
T  28746846 agattctttgaaaagtcaaagaatgaagagaacacaacatgtattctagcaaatcaactatatatgt 28746780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 325
Target Start/End: Original strand, 18038812 - 18038936
Alignment:
Q  201 ttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacc 300  Q
    ||||||||||| ||||||||| || |||||||||||| || || ||| |||| || | |||   |||||||||||||||| | |||| ||||| | |||     
T  18038812 ttagttggcagggcagtaggattatgttcaaaagaatatactgaaattcatttatttttgttattactcatcttatatgaagaaatttgatgtgagaact 18038911  T
Q  301 tatatatttgattcggtagaataca 325  Q
    || ||| || |||||||||||||||    
T  18038912 tacatagttcattcggtagaataca 18038936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 359
Target Start/End: Original strand, 26226633 - 26226676
Alignment:
Q  316 gtagaatacatgtgttatgttctcttcattcttttgaattttca 359  Q
    |||||||||||||||| |||||||||||||||||||| ||||||    
T  26226633 gtagaatacatgtgttgtgttctcttcattcttttgacttttca 26226676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 20989084 - 20988987
Alignment:
Q  20 tagagatttccaagattctttgaaaagtcaaa-taataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt 116  Q
    ||||||||| ||  || ||||||||| ||||| |||| |||||||||  ||||||||| ||| ||||||| | |||| ||| ||||||||||||||||    
T  20989084 tagagatttgcagtatcctttgaaaattcaaaataatgaagagaacaacacatgtattctaccgaatcaactttataggttatcacatcaaatccctt 20988987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 37059344 - 37059423
Alignment:
Q  168 gcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaat 247  Q
    |||| |||||| | |||||||| ||||||||||| ||||| ||| | ||||||| ||| ||||||||||| |||| ||||    
T  37059344 gcttgatcatgtttctctgtcatttgaaacttgtcagttgacagggtagtaggattaaattcaaaagaatatattagaat 37059423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 379
Target Start/End: Original strand, 26617272 - 26617365
Alignment:
Q  282 ggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaatgatgctgcaaatctcta 379  Q
    |||||||||||| | ||| |||||| |||||| |||| ||||||  |||| |||||||||||||| ||||| |||||||| ||  |||||||||||||    
T  26617272 ggaattcgatgtgaaaacatatatagttgatttggtaaaataca--tgttgtgttctcttcattc-tttgatttttcaaa-gaatctgcaaatctcta 26617365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 328
Target Start/End: Original strand, 31991672 - 31991734
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgt 328  Q
    ||||||||||||||| |||||||||| | ||||| |||||| ||||||| | | |||||||||    
T  31991672 actcatcttatatgaaggaattcgatatcataacttatatagttgattctgcataatacatgt 31991734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 5306291 - 5306341
Alignment:
Q  300 ctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttga 352  Q
    ||||||| ||||||||| ||||||||  |||| ||||||||||||||||||||    
T  5306291 ctatatagttgattcggcagaataca--tgttgtgttctcttcattcttttga 5306341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 361
Target Start/End: Complemental strand, 23282718 - 23282625
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    ||||||| |||| || |||||||||||| | ||| ||||||  |||||||  | |||||||||  | |||||||||||||||| ||| ||||||||    
T  23282718 actcatcctatacgaaggaattcgatgtgaaaacatatatagatgattcgacaaaatacatgt--tgtgttctcttcattcttgtgagttttcaaa 23282625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 57 - 313
Target Start/End: Original strand, 5697 - 5955
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatc-ccttgtataagatgagtgggacgtaagggaatgcacatctaag 155  Q
    |||||| ||||||||||||||| |  |||||| ||||||  || ||||||| |||  |||||||||||||||||| |||| ||| |||||||| ||||||    
T  5697 aagagagcacaacatgtattttgcaaaatcaactatataaattctcacatcgaattaccttgtataagatgagtgtgacgaaagagaatgcacctctaag 5796  T
Q  156 atattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcat 255  Q
    || |||||| |||||| ||||||||||||||| |||||||||||||  |||||||||||||||||| ||||||||||||||| ||||||||| ||||| |    
T  5797 atgttgtttcgtgcttgatcatgctcctctgtaaattgaaacttgtctgttggcagtgcagtaggattaagttcaaaagaatatattggaatgcattcct 5896  T
Q  256 ata-tgtccctactcatcttatatgagggaattcgatgttataacctatatatttgatt 313  Q
    |||   |  |||||||| ||||||||||||||||||||| ||||  |||||| ||||||    
T  5897 ataccatagctactcattttatatgagggaattcgatgtcataatttatatagttgatt 5955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 57 - 357
Target Start/End: Complemental strand, 22516 - 22215
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggacgtaagggaatgcacatctaag 155  Q
    |||||||||||||||||||| |   ||||||| |||||| ||| ||||||| ||| |||| |||||||||||||| |||  | | |||||||| ||||||    
T  22516 aagagaacacaacatgtattatgtcgaatcaactatataagttctcacatcgaattccttcgtataagatgagtgtgacaaacgagaatgcacttctaag 22417  T
Q  156 atattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcat 255  Q
    || |||||||   ||| ||||||||| ||||||||||||||||||| |||||| |  |||||| || ||||||||||||||| | ||||||||||||| |    
T  22416 atgttgttttaaacttgatcatgctcttctgtcaattgaaacttgtcagttgggaaggcagtatgattaagttcaaaagaatatgttggaatacattcgt 22317  T
Q  256 atatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaatt 355  Q
     |  | | ||||||||||||||||| |||||||||||| | ||| | || | | |||| |||||||||||||||||  ||||||||||||||||||| ||    
T  22316 gttcgacactactcatcttatatgaaggaattcgatgtgagaacatgtagagtagatttggtagaatacatgtgttgcgttctcttcattcttttgagtt 22217  T
Q  356 tt 357  Q
    ||    
T  22216 tt 22215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 57 - 357
Target Start/End: Original strand, 44100835 - 44101136
Alignment:
Q  57 aagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggacgtaagggaatgcacatctaag 155  Q
    ||||||| |||| ||||||| | | ||||||| |||||| ||| ||||||| ||| |||| ||||||||||||||  ||  |||| ||||||  | ||||    
T  44100835 aagagaaaacaatatgtattatgccgaatcaactatataagttctcacatcgaattccttcgtataagatgagtgtcacaaaaggaaatgcatttataag 44100934  T
Q  156 atattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcat 255  Q
    || |||||||||| || ||||||||||||| ||||||||||||||| ||||||||  | |||| || ||||||||| ||||| |||||  ||  | || |    
T  44100935 atgttgttttgtgtttgatcatgctcctctatcaattgaaacttgtcagttggcaaggtagtaagattaagttcaatagaatatattgagatgtactcct 44101034  T
Q  256 atatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaatt 355  Q
     |||||  ||||||||| ||||| | || ||||||||  |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||| ||    
T  44101035 ttatgtgactactcatcctatataaagggattcgatgcgataacctatatagttgattcggtataatacatgtgttgtgttctcttcattcttttgagtt 44101134  T
Q  356 tt 357  Q
    ||    
T  44101135 tt 44101136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 53 - 348
Target Start/End: Complemental strand, 12227350 - 12227054
Alignment:
Q  53 aataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggacgtaagggaatgcacatc 151  Q
    ||||||||| ||||||| |||||| | | ||||||| |||||||||||||||||| ||| |||| ||||||||||||||  ||  |||| ||||||  |     
T  12227350 aataaagagtacacaacttgtattctgccgaatcaactatatatgttttcacatcgaattccttcgtataagatgagtgtcacaaaaggaaatgcatttt 12227251  T
Q  152 taagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacat 251  Q
    |||||| ||||||||||||| |||||| |||| ||||||||||||||||| ||||||||| ||| || || ||||||||||| ||| |||||| || |||    
T  12227250 taagatgttgttttgtgcttgatcatgttcctgtgtcaattgaaacttgtcagttggcagggcactatgattaagttcaaaataatatattgggatgcat 12227151  T
Q  252 tcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattctt 348  Q
    ||   | |||    | ||||| ||||||| |  ||||||||| | ||| |||||| |||||| |||||||||||  |||| ||||||||||||||||    
T  12227150 tccattttgtgatgattcatcctatatgaagagattcgatgtgagaacttatatagttgatttggtagaatacaaatgttgtgttctcttcattctt 12227054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 177 - 360
Target Start/End: Complemental strand, 20758781 - 20758598
Alignment:
Q  177 tgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttat 276  Q
    |||||||||||||||||| |||||||||||||||| | |||| || | | ||||||  ||  | ||||||| ||||| | |||||    |||||||||||    
T  20758781 tgctcctctgtcaattgagacttgttagttggcagggtagtaagattcaattcaaagcaacctcttggaatgcattcctttatgtgatgactcatcttat 20758682  T
Q  277 atgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaa 360  Q
    ||||||||||||||||| ||||| |||| | ||||||  |||||||||||||||| |||||||||||||||||||| |||||||    
T  20758681 atgagggaattcgatgtgataacttatagagttgattttgtagaatacatgtgttgtgttctcttcattcttttgacttttcaa 20758598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 177 - 360
Target Start/End: Complemental strand, 20765172 - 20764989
Alignment:
Q  177 tgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttat 276  Q
    |||||||||||||||||| |||||||||||||||| | |||| || | | ||||||  ||  | ||||||| ||||| | |||||    |||||||||||    
T  20765172 tgctcctctgtcaattgagacttgttagttggcagggtagtaagattcaattcaaagcaacctcttggaatgcattcctttatgtgatgactcatcttat 20765073  T
Q  277 atgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaa 360  Q
    ||||||||||||||||| ||||| |||| | ||||||  |||||||||||||||| |||||||||||||||||||| |||||||    
T  20765072 atgagggaattcgatgtgataacttatagagttgattttgtagaatacatgtgttgtgttctcttcattcttttgacttttcaa 20764989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 39 - 232
Target Start/End: Original strand, 25144856 - 25145050
Alignment:
Q  39 ttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccc-ttgtataagatgagtgggacgta 137  Q
    |||||||||||||  || |||||||||||||||||||| | | ||||||  |||||| ||| ||| ||  ||| || ||||||| ||||||||  ||  |    
T  25144856 ttgaaaagtcaaaagatgaagagaacacaacatgtattctgcagaatcagttatataagttatcatatggaattccattgtataggatgagtgtcacaga 25144955  T
Q  138 agggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaa 232  Q
    ||||||||||| |||||||  || ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| || ||| ||||||    
T  25144956 agggaatgcacctctaagaagttcttttgagcttgatcatgctcctctgtcaattgaaacttgttagttggcagggcagtaagattaacttcaaa 25145050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 163 - 359
Target Start/End: Original strand, 24075670 - 24075866
Alignment:
Q  163 tttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaatacattcatatatgtc 262  Q
    |||| |||| ||||||||||| ||||||||||||||||| ||||||||| |||||| || ||||||||||  ||| | ||||||| ||||| | | |||     
T  24075670 tttgagcttgatcatgctcctatgtcaattgaaacttgtcagttggcagagcagtaagattaagttcaaagcaatctgttggaatgcattcctttttgtg 24075769  T
Q  263 cctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttca 359  Q
       ||||||| |||| || |||||||||||| | ||  |||||| ||||||   ||||||||||||||| |||| ||||||||||||||| ||||||    
T  24075770 atgactcatcgtataagaaggaattcgatgtgagaatttatatagttgattttttagaatacatgtgttgtgttttcttcattcttttgacttttca 24075866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 266 - 360
Target Start/End: Original strand, 25145206 - 25145300
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaa 360  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||||||  ||||||||||||| || |||||||||||||||||||| |||||||    
T  25145206 actcatcttatatgaggaaattcgatgttataacctataaagttgattttgtagaatacatgtattgtgttctcttcattcttttgacttttcaa 25145300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 211
Target Start/End: Original strand, 24075413 - 24075589
Alignment:
Q  36 tctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatcaaatccctt-gtataagatgagtgggac 134  Q
    ||||||||||||||||  || |||||||||||||||||||| ||| ||||||  ||||||  ||||||||| |||| ||||  |||| ||||||||  ||    
T  24075413 tctttgaaaagtcaaaagattaagagaacacaacatgtattctacagaatcagctatatagattttcacataaaattccttcttatatgatgagtgtcac 24075512  T
Q  135 gtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcag 211  Q
    | ||||||||||||||||||||  ||  ||||   |  ||| ||||||||| ||||||||||||||| |||||||||    
T  24075513 ggaagggaatgcacatctaagaggttcctttgaattggatcgtgctcctctatcaattgaaacttgtcagttggcag 24075589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 140 - 361
Target Start/End: Complemental strand, 23620758 - 23620540
Alignment:
Q  140 ggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgt 239  Q
    ||||||||| ||||||| |||  |||  | || ||| ||| |||||||||||||||| |||| ||||| ||| |||||| || |||| |||||||||  |    
T  23620758 ggaatgcacctctaagagattcctttaagtttgatcgtgcccctctgtcaattgaaatttgtcagttgacagagcagtaagattaagctcaaaagaacct 23620659  T
Q  240 attggaatacattcatatatgtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctc 339  Q
     ||| ||| ||||| | |||||  | |||| ||||||||||| ||||||||||| ||||| |||||| ||||||| | | ||||||  |||| |||||||    
T  23620658 cttgaaatgcattcctttatgtgacgactcgtcttatatgagagaattcgatgtgataacatatatagttgattctgcataataca--tgttgtgttctc 23620561  T
Q  340 ttcattcttttgaattttcaaa 361  Q
    || | |||||||| ||||||||    
T  23620560 tt-aatcttttgacttttcaaa 23620540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 263 - 361
Target Start/End: Complemental strand, 23124429 - 23124333
Alignment:
Q  263 cctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaa 361  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||  |||||  |||||||||||||||  ||||||||||||| |||| | ||||||||    
T  23124429 cctactcatcttatatgagagaattcgatgtgaaaacctatatagatgattttgtagaatacatgtgt--tgttctcttcattattttaagttttcaaa 23124333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 266 - 348
Target Start/End: Original strand, 17292456 - 17292538
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattctt 348  Q
    |||| ||||||||||||||||||||| | ||||| |||||| ||||||  ||||||||||||| || ||||||||||||||||    
T  17292456 actcgtcttatatgagggaattcgatttgataacatatatagttgattttgtagaatacatgtattgtgttctcttcattctt 17292538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 24576666 - 24576584
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattctt 348  Q
    |||| ||||||||||||||||| ||||| ||||| |||||| ||||||  ||||||||||| |||| ||||||||||||||||    
T  24576666 actcgtcttatatgagggaatttgatgtgataacatatatagttgattttgtagaatacatatgttgtgttctcttcattctt 24576584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 3510209 - 3510049
Alignment:
Q  117 gtataagatgagtgggacgtaagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcag 216  Q
    |||||||| ||| | |||| |||||||||||  || ||||| |  ||||| |||| |||||||||||||||| |||||||| ||| | |||| |  ||||    
T  3510209 gtataagaagagggtgacgaaagggaatgcatttccaagatgtctttttgagcttgatcatgctcctctgtccattgaaacatgtcaattggtatggcag 3510110  T
Q  217 taggagtaagttcaaaagaatgtattggaatacattcatatatgtccctactcatcttata 277  Q
    |||||  |||||| || |||| ||||||||  ||||||| | ||||  |||||||||||||    
T  3510109 taggataaagttccaatgaatatattggaaagcattcatttttgtcattactcatcttata 3510049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 237
Target Start/End: Complemental strand, 35049426 - 35049342
Alignment:
Q  153 aagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaat 237  Q
    ||||| |||||||| |||| ||||||||||| ||||||||||||| ||| ||||||||| ||||||||   ||| ||||||||||    
T  35049426 aagatgttgttttgagcttgatcatgctcctatgtcaattgaaacatgtcagttggcagagcagtagggtgaagctcaaaagaat 35049342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 23620539 - 23620609
Alignment:
Q  37 ctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatc 107  Q
    |||||||||||||||  || |||||||||||||||||||| | | ||||||| |||||||||| |||||||    
T  23620539 ctttgaaaagtcaaaagattaagagaacacaacatgtattatgcagaatcaactatatatgttatcacatc 23620609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 20758950 - 20758854
Alignment:
Q  137 aagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaa 233  Q
    |||||||| ||| |||||||  || ||||| |||| | ||||||||||| |||||||||| |||| |||||||||  ||||| || |||||||||||    
T  20758950 aagggaatccacctctaagaggttcttttgagcttgaccatgctcctctttcaattgaaatttgtcagttggcaggacagtaagattaagttcaaaa 20758854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 20765341 - 20765245
Alignment:
Q  137 aagggaatgcacatctaagatattgttttgtgcttaatcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaa 233  Q
    |||||||| ||| |||||||  || ||||| |||| | ||||||||||| |||||||||| |||| |||||||||  ||||| || |||||||||||    
T  20765341 aagggaatccacctctaagaggttcttttgagcttgaccatgctcctctttcaattgaaatttgtcagttggcaggacagtaagattaagttcaaaa 20765245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 48135774 - 48135848
Alignment:
Q  174 tcatgctcctctgtcaattgaaacttgttagttggcagtgcagtaggagtaagttcaaaagaatgtattggaata 248  Q
    |||||||||  ||||||||||||||||| | || |||||  | || || ||||||||||||||||||||||||||    
T  48135774 tcatgctcccatgtcaattgaaacttgtcaattagcagtagaataagattaagttcaaaagaatgtattggaata 48135848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 12227273 - 12227332
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaataca 325  Q
    |||||||||||| || |||||||||||| | ||| |||||| ||||||||| ||||||||    
T  12227273 actcatcttatacgaaggaattcgatgtgaaaacatatatagttgattcggcagaataca 12227332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 3393976 - 3393914
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgt 328  Q
    ||||||||||||||| |||||||||| | ||||| || ||| ||||||||| | |||||||||    
T  3393976 actcatcttatatgaaggaattcgatatcataacttacatagttgattcggcataatacatgt 3393914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 13851138 - 13851076
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgt 328  Q
    ||||||||||||||| |||||||||| | ||||| |||||| ||||||| | | |||||||||    
T  13851138 actcatcttatatgaaggaattcgatatcataacttatatagttgattctgcataatacatgt 13851076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 328
Target Start/End: Original strand, 13866686 - 13866748
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgt 328  Q
    |||| |||||||||||| |||||||||| ||||| |||||| ||||||| | | |||||||||    
T  13866686 actcgtcttatatgaggaaattcgatgtgataacatatatagttgattctgcataatacatgt 13866748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 21411410 - 21411353
Alignment:
Q  271 tcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgt 328  Q
    ||||||||||||||||| ||||| || || |||||| ||||||| | |||||||||||    
T  21411410 tcttatatgagggaatttgatgtgatgacatatatagttgattctggagaatacatgt 21411353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 21412035 - 21412092
Alignment:
Q  271 tcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgt 328  Q
    ||||||||||||||||| ||||| || || |||||| ||||||| | |||||||||||    
T  21412035 tcttatatgagggaatttgatgtgatgacatatatagttgattctggagaatacatgt 21412092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 44100908 - 44100848
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacat 326  Q
    |||||||||||| || |||||||||||| | ||| |||||| ||||||||| | |||||||    
T  44100908 actcatcttatacgaaggaattcgatgtgagaacttatatagttgattcggcataatacat 44100848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 36991 - 37108
Alignment:
Q  32 agattctttgaaaagtcaaataataaagagaacacaacatgtattttactgaatcaagtatatatgttttcacatc-aaatcccttgtataagatgagtg 130  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||||||||  |||||| |||||||||||||||||| || ||| || |||| ||||||||    
T  36991 agattttttgaaaagtcaaagaatgaagagaacacaacatgtattttaccaaatcaactatatatgttttcacatcgaattcctttatataggatgagtg 37090  T
Q  131 ggacgtaagggaatgcac 148  Q
    || |||||| ||||||||    
T  37091 gggcgtaagagaatgcac 37108  T

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Target: scaffold0027; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 260 - 379
Target Start/End: Original strand, 37122 - 37241
Alignment:
Q  260 gtccctactcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttca 359  Q
    |||| ||| |||| ||||||| || ||||||||| | ||| | |||| |||||| | ||||| ||||||||| |||||||||||||||||||| ||||||    
T  37122 gtccatacccatcctatatgaagggattcgatgtgagaacttttatagttgatttgctagaacacatgtgttgtgttctcttcattcttttgacttttca 37221  T
Q  360 aatgatgctgcaaatctcta 379  Q
    ||  | | ||||||||||||    
T  37222 aagaaagttgcaaatctcta 37241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 379
Target Start/End: Complemental strand, 37089 - 36980
Alignment:
Q  266 actcatcttatatgagggaattcgatgttataacctatatatttgattcggtagaatacatgtgttatgttctcttcattcttttgaattttcaaatgat 365  Q
    ||||||| ||||| | |||||||||||| | ||| |||||| |||||| |||| ||||||  |||| |||||||||||||| ||||| ||||||||  ||    
T  37089 actcatcctatataaaggaattcgatgtgaaaacatatatagttgatttggtaaaataca--tgttgtgttctcttcattc-tttgacttttcaaaaaat 36993  T
Q  366 gctgcaaatctcta 379  Q
     |||||||||||||    
T  36992 -ctgcaaatctcta 36980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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