View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21679_high_8 (Length: 377)
Name: NF21679_high_8
Description: NF21679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21679_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 2766832 - 2766474
Alignment:
| Q |
1 |
attccacctttaggaatttttaaaagttgttacttttcgatcatccctnnnnnnn-gttatttttcagtcatgtaaacgcttctagtcatcactatgtgt |
99 |
Q |
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| T |
2766832 |
attccacctttaggaattttttaaagttgttacttttcggtcatccctaaaaaaaagttatttttcagtcatgtaaacgcttctagtcatcactatgtgt |
2766733 |
T |
|
| Q |
100 |
agcagccatatcaacaaataaatgctgcttagcacacgatctgtcacataatattcttttaacaa-tgttaaattagaatttgatgcagtggactaaaat |
198 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
2766732 |
agcagccatatcaacaaataaatgctgcctagtacacgatctgtcacataatattcttttaacaaattttaaattagaatttgatgcagtggactaaaat |
2766633 |
T |
|
| Q |
199 |
agtggaacatttgtaacgttatgaatcaaagtgaaatctttaatacataaaggatcaaaatgaaacctagaataaacactacgaattataatatatannn |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
2766632 |
agtggaacatttgtaacgttatgaatcaaagtgaaatctttaatacataaaggatcaaaatgaaacctagaataaatactaggaattataatatat-ttt |
2766534 |
T |
|
| Q |
299 |
nnnnctgattcaactgaagcctaaatcaacaatttttcttcttagattttgatgatgatg |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2766533 |
ttttctgattcaactgaagcctaaatcaacaatttttcttcttagattttgatgatgatg |
2766474 |
T |
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