View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2167_high_3 (Length: 354)
Name: NF2167_high_3
Description: NF2167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2167_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 487967 - 488294
Alignment:
| Q |
17 |
aaattattatgaccaagcctaccccaactgcaatgactgtaatcatccatattttgcttgaattatctgcacaaaagatcaatcaaaactagctttgaca |
116 |
Q |
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| T |
487967 |
aaattattatgaccaagcctaccccaactgcaatgactgtaatcatccatattttgcttgaattatctgcacaaaagatcaatcaaaactagctttgaca |
488066 |
T |
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| Q |
117 |
gaatgtttaagaattgtattgcaacttgagaaatgcttacttttccctcctaggttggtagaagactttgtttgttctttttcaccaagataaaatggat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
488067 |
gaatgtttaagaattgtattgcaacttgagaaatgcttacttttccctcctaggttggtagaagactttgtttgttctttttcaccaagataaaatggat |
488166 |
T |
|
| Q |
217 |
agaattcatatctcagataacagctacgactcataactctcgcaccaatggaggcataacagcaacctggtatatctccaatagcacttagtagacacct |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
488167 |
agaattcatatctcagataacagctgcgactcataactctcgcaccaatggaggcataacagcaacctggtatatctccaatagcacttagtagacacct |
488266 |
T |
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| Q |
317 |
actgcaatcattagctgctagatctctg |
344 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
488267 |
actgcaatcattagctgctagatctctg |
488294 |
T |
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