View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2167_high_6 (Length: 277)
Name: NF2167_high_6
Description: NF2167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2167_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 60 - 268
Target Start/End: Original strand, 29729628 - 29729836
Alignment:
| Q |
60 |
agtttaattactgattcagtaataattctatctacaaatatgaatgctatatttggacttatttatattatattccatttttatactggtcctgttaatg |
159 |
Q |
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| T |
29729628 |
agtttaattactgattcagtaataattctatctacaaatatgaatgctatatttggacttatttatattatattccatttttatactggtcctgttaatg |
29729727 |
T |
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| Q |
160 |
ttggtaaccaagaaatactggtcctatatttggacagttttattcgatgttgttgataattaattgggtaagaaggtttcattgcaatgccacataggcc |
259 |
Q |
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| T |
29729728 |
ttggtaaccaagaagtactgatcctatatttggacagttttattcgatgttgttgataattaattgggtaagaaggtttcattgcaatgccacataggcc |
29729827 |
T |
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| Q |
260 |
ttcctttgc |
268 |
Q |
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||||||||| |
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| T |
29729828 |
ttcctttgc |
29729836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 29733100 - 29733172
Alignment:
| Q |
192 |
gacagttttattcgatgttgttgataattaattgggtaagaaggtttcattgcaatgccacataggccttcctttgc |
268 |
Q |
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| T |
29733100 |
gacagttttattcgatgttgttgataat----tgggtaagaaggtttcattgcaatgccacataggccttcctttgc |
29733172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 29934765 - 29934811
Alignment:
| Q |
222 |
attgggtaagaaggtttcattgcaatgccacataggccttcctttgc |
268 |
Q |
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| T |
29934765 |
attgggtaaaaagcattcattgcaatgccacataggccttcctttgc |
29934811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 29729579 - 29729610
Alignment:
| Q |
17 |
aaaagggatttgagggtatgatcttagtcgat |
48 |
Q |
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| T |
29729579 |
aaaagggatttgagggtatgatcttagtcgat |
29729610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 16850106 - 16850261
Alignment:
| Q |
17 |
aaaagggatttgagggtatgatcttagtcgatacannnnnnnnagtttaattactgattcagtaataattctatctacaaatatgaat-gcta-tatttg |
114 |
Q |
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|||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| | || ||||| |
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| T |
16850106 |
aaaagggatt-gagggtatgatcttagttgatacattttttttagtttaattactgattcagtaataattctatctacaaacatgaatagttactattt- |
16850203 |
T |
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| Q |
115 |
gacttatttatattatattccatttttatactggtcctgttaatgttggtaaccaaga |
172 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16850204 |
gacttatttatattatattccatttttatactggtcctgttaatgttggtaactaaga |
16850261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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