View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2167_high_8 (Length: 249)

Name: NF2167_high_8
Description: NF2167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2167_high_8
NF2167_high_8
[»] chr4 (17 HSPs)
chr4 (34-225)||(22289967-22290157)
chr4 (37-229)||(33690278-33690471)
chr4 (20-87)||(16904950-16905017)
chr4 (21-73)||(18209689-18209741)
chr4 (20-87)||(44376077-44376144)
chr4 (24-87)||(46256198-46256261)
chr4 (20-87)||(52434788-52434855)
chr4 (20-62)||(35760770-35760812)
chr4 (21-87)||(39058356-39058422)
chr4 (21-87)||(47142799-47142865)
chr4 (22-87)||(12090459-12090524)
chr4 (22-87)||(30824922-30824987)
chr4 (21-62)||(31965968-31966009)
chr4 (22-87)||(33139471-33139536)
chr4 (22-87)||(37590804-37590869)
chr4 (22-87)||(37651830-37651895)
chr4 (21-62)||(53143261-53143302)
[»] chr6 (12 HSPs)
chr6 (21-196)||(15432336-15432511)
chr6 (21-87)||(1405562-1405628)
chr6 (21-87)||(3593057-3593123)
chr6 (22-87)||(13533931-13533996)
chr6 (21-73)||(162668-162720)
chr6 (21-87)||(2266940-2267006)
chr6 (21-87)||(12597264-12597330)
chr6 (34-87)||(6300721-6300774)
chr6 (34-87)||(6307531-6307584)
chr6 (22-87)||(33646106-33646171)
chr6 (22-62)||(8539742-8539782)
chr6 (22-62)||(28099597-28099637)
[»] chr7 (17 HSPs)
chr7 (46-171)||(21680989-21681114)
chr7 (20-167)||(21651462-21651609)
chr7 (37-222)||(21713499-21713688)
chr7 (21-87)||(16376544-16376610)
chr7 (147-225)||(40674298-40674376)
chr7 (22-87)||(13786334-13786399)
chr7 (19-87)||(42242151-42242219)
chr7 (20-87)||(21804570-21804637)
chr7 (20-87)||(27903415-27903482)
chr7 (20-87)||(33916945-33917012)
chr7 (147-225)||(21314280-21314358)
chr7 (21-87)||(40969055-40969121)
chr7 (22-87)||(21670145-21670210)
chr7 (21-62)||(31373645-31373686)
chr7 (20-89)||(32661031-32661100)
chr7 (22-87)||(38163339-38163404)
chr7 (22-62)||(21342012-21342052)
[»] scaffold0019 (2 HSPs)
scaffold0019 (34-206)||(177839-178010)
scaffold0019 (46-94)||(149046-149094)
[»] chr8 (13 HSPs)
chr8 (20-87)||(28583019-28583086)
chr8 (21-87)||(11725354-11725420)
chr8 (21-87)||(39997855-39997921)
chr8 (147-220)||(18850765-18850838)
chr8 (19-87)||(32110858-32110926)
chr8 (20-87)||(18175545-18175612)
chr8 (21-87)||(995814-995880)
chr8 (21-87)||(10478101-10478167)
chr8 (21-87)||(30473883-30473949)
chr8 (22-87)||(6299020-6299085)
chr8 (22-87)||(15961296-15961361)
chr8 (22-87)||(24409040-24409105)
chr8 (22-62)||(23353622-23353662)
[»] chr3 (16 HSPs)
chr3 (20-87)||(6460166-6460233)
chr3 (21-87)||(36076453-36076519)
chr3 (22-87)||(4584434-4584499)
chr3 (22-87)||(26948962-26949027)
chr3 (20-87)||(38653925-38653992)
chr3 (20-62)||(5561551-5561593)
chr3 (21-87)||(12264364-12264430)
chr3 (21-87)||(43363610-43363676)
chr3 (22-87)||(1941720-1941785)
chr3 (22-87)||(3898586-3898651)
chr3 (22-87)||(34121519-34121584)
chr3 (22-87)||(49672726-49672791)
chr3 (22-62)||(21098493-21098533)
chr3 (22-62)||(40014653-40014693)
chr3 (154-225)||(46921552-46921624)
chr3 (19-87)||(49506346-49506414)
[»] chr5 (13 HSPs)
chr5 (21-87)||(1396153-1396219)
chr5 (22-87)||(20655049-20655114)
chr5 (20-87)||(2398940-2399007)
chr5 (20-87)||(10729440-10729507)
chr5 (20-87)||(34107336-34107403)
chr5 (21-87)||(16526305-16526371)
chr5 (29-87)||(33375928-33375986)
chr5 (21-87)||(38246864-38246930)
chr5 (22-87)||(20874852-20874917)
chr5 (34-87)||(25099248-25099301)
chr5 (34-87)||(25158338-25158391)
chr5 (22-87)||(34110816-34110881)
chr5 (22-87)||(40177205-40177270)
[»] chr2 (8 HSPs)
chr2 (21-87)||(8700425-8700491)
chr2 (21-87)||(19596362-19596428)
chr2 (20-87)||(18351715-18351782)
chr2 (20-87)||(27944794-27944861)
chr2 (21-87)||(6120716-6120782)
chr2 (21-62)||(20545014-20545055)
chr2 (22-87)||(41664674-41664739)
chr2 (22-87)||(44902245-44902310)
[»] chr1 (12 HSPs)
chr1 (22-87)||(1231960-1232025)
chr1 (20-62)||(9216220-9216262)
chr1 (21-87)||(34888685-34888751)
chr1 (29-87)||(35614231-35614289)
chr1 (22-87)||(4266545-4266610)
chr1 (22-87)||(18706509-18706574)
chr1 (21-62)||(18855232-18855273)
chr1 (22-87)||(29942182-29942247)
chr1 (22-87)||(31018200-31018265)
chr1 (22-87)||(38913747-38913812)
chr1 (22-62)||(2951366-2951406)
chr1 (21-89)||(29387886-29387954)
[»] scaffold0515 (1 HSPs)
scaffold0515 (22-62)||(6061-6101)
[»] scaffold0306 (1 HSPs)
scaffold0306 (22-62)||(6071-6111)
[»] scaffold0031 (1 HSPs)
scaffold0031 (21-87)||(46438-46504)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 34 - 225
Target Start/End: Original strand, 22289967 - 22290157
Alignment:
Q  34 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaatgttatactaata 133  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||  |||||||||||    
T  22289967 acccgtgctgccgcacgagtcatatacattgaaaatgtagaaggcaaaaacaaaatgacatattgcatacc-atcttaaaatcttaacattatactaata 22290065  T
Q  134 aatacaattatatttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagtactatcaatgcaaacaccatc 225  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22290066 aatacaattatatttgtatttttttatgtctacacattgtggaaagtttctttgaaaactacatctgaagtactatcaatgcaaaaaccatc 22290157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 229
Target Start/End: Complemental strand, 33690471 - 33690278
Alignment:
Q  37 cgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaatgttatactaataaat 136  Q
    |||||||| ||| | |||||||| ||||||||||||| ||| |||||||||||||||| ||| ||||| | |||||||  |||| |||||  |||| |||    
T  33690471 cgtgctgctgcaggagtcatatatatcgaaaatgtagtaggtaaaaacaaaatgacat-ttatataccaagcttaaaactttaacgttatgataattaat 33690373  T
Q  137 acaattatatttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagt--actatcaatgcaaacaccatcctca 229  Q
     |||||||||||||||   ||||||| || ||||||  ||||  ||||||||||||||| | ||||||  |||||||||||||| | ||||||||    
T  33690372 gcaattatatttgaaggaattcatgtttatacattgcagaaatattctttgaaaactacgtttgaagtacactatcaatgcaaagatcatcctca 33690278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 16904950 - 16905017
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  16904950 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 16905017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 18209741 - 18209689
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtag 73  Q
    ||||||| |||| ||||||||||| |||||||||||||||||  |||||||||    
T  18209741 aactagactttccacccgtgctgccgcacgggtcatatacattcaaaatgtag 18209689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 44376077 - 44376144
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||||||  || ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  44376077 taactagatcgtccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 44376144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 46256261 - 46256198
Alignment:
Q  24 tagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  46256261 tagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 46256198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 52434855 - 52434788
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  52434855 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 52434788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 35760812 - 35760770
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||    
T  35760812 taactagattttccacccgtgctgccgcacgagtcatatacat 35760770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 39058356 - 39058422
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||||||||| ||| ||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  39058356 aactagattttccacctgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 39058422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 47142799 - 47142865
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| |||| |||||||||||| | | |||||| || ||||||||||    
T  47142799 aactagactttccacccgtgctgccgcactggtcatatacattgtagatgtagtagacaaaaacaaa 47142865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 12090459 - 12090524
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  12090459 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 12090524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 30824922 - 30824987
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  30824922 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 30824987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 31965968 - 31966009
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  31965968 aactagactttccacccgtgctgccgcacgggtcatatacat 31966009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 33139471 - 33139536
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  33139471 actagactttccacccgtgctgccgcacgggtcatatacattgtagatttagtagacaaaaacaaa 33139536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 37590804 - 37590869
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||| ||||    
T  37590804 actagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaatcaaa 37590869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 37651895 - 37651830
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  37651895 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 37651830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 53143261 - 53143302
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    |||||||||||  ||||||||||| |||||||||||||||||    
T  53143261 aactagatttttcacccgtgctgccgcacgggtcatatacat 53143302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 15432336 - 15432511
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaa 120  Q
    ||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  15432336 aactagactttctacccgtgcggccgcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaagtgacatattacatacccaacttaaaatcttaa 15432435  T
Q  121 tgttatactaataaatacaattatatttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactaca 196  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||    
T  15432436 tgttatcctaataaatacaattatattggaagtttttcatgtctacacatcgtggaaagtttctttgaaaattaca 15432511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 1405562 - 1405628
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||||||||| ||||||||||| ||||||||||||||||| | | |||||| ||  |||||||||    
T  1405562 aactagattttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagataaaaacaaa 1405628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 3593123 - 3593057
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  3593123 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 3593057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 13533996 - 13533931
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||||||| ||||||||||| ||||||||||||||||| | | |||||| ||  |||||||||    
T  13533996 actagattttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagataaaaacaaa 13533931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 162668 - 162720
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtag 73  Q
    ||||||| |||| ||||||||||| |||||||||||||||||  |||||||||    
T  162668 aactagactttccacccgtgctgccgcacgggtcatatacattcaaaatgtag 162720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 2267006 - 2266940
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  2267006 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 2266940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 12597264 - 12597330
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  12597264 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 12597330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 6300721 - 6300774
Alignment:
Q  34 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||||||| ||||||||||||||||| | | || ||| |||||||||||||    
T  6300721 acccgtgctgccgcacgggtcatatacattgtatatctagtaggcaaaaacaaa 6300774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 6307531 - 6307584
Alignment:
Q  34 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||||||| ||||||||||||||||| | | || ||| |||||||||||||    
T  6307531 acccgtgctgccgcacgggtcatatacattgtatatctagtaggcaaaaacaaa 6307584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 33646171 - 33646106
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  33646171 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 33646106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 8539782 - 8539742
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  8539782 actagactttccacccgtgctgccgcacgggtcatatacat 8539742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 28099597 - 28099637
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  28099597 actagactttccacccgtgctgccgcacgggtcatatacat 28099637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 21681114 - 21680989
Alignment:
Q  46 gcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaatgttatactaataaatacaattata 145  Q
    ||||||||||||||||||| |||||||| || |||||| ||||| | |||  ||||||||| |||| ||| |||||||||||  ||||||||||||||||    
T  21681114 gcacgggtcatatacatcgtaaatgtagtagacaaaaataaaattatatagcacatacccaacttataattttaatgttataagaataaatacaattata 21681015  T
Q  146 tttgaagtttttcatgtctacacatt 171  Q
    |||||||||| |||||| ||||||||    
T  21681014 tttgaagtttctcatgtttacacatt 21680989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 21651609 - 21651462
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatctta 119  Q
    |||||||||  |||||||||| | |  || ||||||||||||| | ||||| |  || || || |||||| | ||| ||| |||||| |||| ||| |||    
T  21651609 taactagatggtctacccgtgatacaacatgggtcatatacattgtaaatgcaatagacagaagcaaaattagatagtacttacccaacttataatttta 21651510  T
Q  120 atgttatactaataaatacaattatatttgaagtttttcatgtctaca 167  Q
    |||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  21651509 atgttataataataaatacaattatatttgaagtttctcatgtttaca 21651462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 222
Target Start/End: Complemental strand, 21713688 - 21713499
Alignment:
Q  37 cgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaatgttatactaataaat 136  Q
    |||||| | ||| |||||||||||| || | |||||| ||  |||| |||||| | ||| |||||||| || ||| ||| ||||||||||| ||||||||    
T  21713688 cgtgctaccgcatgggtcatatacaccgtagatgtagtagataaaagcaaaattatatagtacataccaattttataattttaatgttataataataaat 21713589  T
Q  137 aca--attatatttgaagtttttcatgtctacacattgt--ggaaagtttctttgaaaactacatctgaagtactatcaatgcaaacacc 222  Q
    |||  ||||||||||||||||  ||||| |||||||| |  | ||| |||||||  | |||||||   ||||||||| ||||||||||||    
T  21713588 acaatattatatttgaagtttcccatgtttacacattcttcgaaaaatttctttatacactacattcaaagtactataaatgcaaacacc 21713499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 16376544 - 16376610
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  16376544 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 16376610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 40674298 - 40674376
Alignment:
Q  147 ttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagtactatcaatgcaaacaccatc 225  Q
    |||||||||||| ||||||| ||||  ||||| ||||||| || |||||||  |||| || ||||||||||||||||||    
T  40674298 ttgaagtttttcgtgtctacgcatttcggaaaatttctttaaacactacattcgaagaaccatcaatgcaaacaccatc 40674376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 13786399 - 13786334
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  13786399 actagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 13786334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 42242151 - 42242219
Alignment:
Q  19 gtaactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  42242151 gtaactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 42242219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 21804570 - 21804637
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  21804570 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 21804637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 27903415 - 27903482
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||||| |||| ||||||||||| |||||||||||||| || | | |||||| || ||||||||||    
T  27903415 taactagactttccacccgtgctgccgcacgggtcatatatattgtagatgtagtagacaaaaacaaa 27903482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 33916945 - 33917012
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  33916945 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 33917012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 21314280 - 21314358
Alignment:
Q  147 ttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagtactatcaatgcaaacaccatc 225  Q
    ||||| |||||| ||||||| ||||  | ||| ||||||| || |||||||  |||| |||||||||||||||||||||    
T  21314280 ttgaaatttttcgtgtctacgcatttcgaaaaatttctttaaacactacattcgaagaactatcaatgcaaacaccatc 21314358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 40969121 - 40969055
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || || |||||||    
T  40969121 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacacaaacaaa 40969055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 21670210 - 21670145
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| |||| |||||||||||| | | |||||| || ||||||||||    
T  21670210 actagactttccacccgtgctgccgcacaggtcatatacattgtagatgtagtagacaaaaacaaa 21670145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 31373686 - 31373645
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  31373686 aactagactttccacccgtgctgccgcacgggtcatatacat 31373645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 32661100 - 32661031
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaat 89  Q
    |||||||||  |||||||||||||| ||||| ||||||||||| | || ||||| || ||||| ||||||    
T  32661100 taactagatcgtctacccgtgctgccgcacgagtcatatacattgtaagtgtagtagacaaaagcaaaat 32661031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 38163339 - 38163404
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  38163339 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38163404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 21342052 - 21342012
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  21342052 actagactttccacccgtgctgccgcacgggtcatatacat 21342012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 177839 - 178010
Alignment:
Q  34 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaatgttatactaata 133  Q
    |||||||||||  ||||||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||  | |||| ||  |||| || ||  ||||     
T  177839 acccgtgctgccacacgggtcatatatatcgaaaatgtagcaggcaaaaacaaaatgacat-ttatatacgaagcttagaactttaacgtcatgataatt 177937  T
Q  134 aatacaattatatttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagtac 206  Q
    ||| ||||||||||||| |   ||||||| || ||||||  |||| ||| |||||||||||| | ||||||||    
T  177938 aatgcaattatatttgagggaattcatgtttatacattgcagaaaatttgtttgaaaactacgtttgaagtac 178010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 149046 - 149094
Alignment:
Q  46 gcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacat 94  Q
    |||||||||||||| ||||||||||||| |||| |||||||||||||||    
T  149046 gcacgggtcatatatatcgaaaatgtagcaggcgaaaacaaaatgacat 149094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 28583086 - 28583019
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||||||||| ||||||||||| ||||||||||||||||| | | |||||| ||  |||||||||    
T  28583086 taactagattttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagataaaaacaaa 28583019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 11725420 - 11725354
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  11725420 aactagactttccacccgtgctgctgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 11725354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 39997921 - 39997855
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  39997921 aactagaatttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 39997855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 18850765 - 18850838
Alignment:
Q  147 ttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagtactatcaatgcaaaca 220  Q
    ||||||| ||| |||||||| |||| |||||| ||||||| || |||||||  |||| ||||||||||||||||    
T  18850765 ttgaagtcttttatgtctacgcattttggaaaatttctttaaacactacattcgaagaactatcaatgcaaaca 18850838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 32110858 - 32110926
Alignment:
Q  19 gtaactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  32110858 gtaactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 32110926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 18175612 - 18175545
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  18175612 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 18175545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 995814 - 995880
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  995814 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 995880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 10478167 - 10478101
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  10478167 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 10478101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 30473883 - 30473949
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  30473883 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 30473949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 6299020 - 6299085
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  6299020 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 6299085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 15961361 - 15961296
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  15961361 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 15961296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 24409105 - 24409040
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||||||||||| ||| ||||||||||||||||| | | |||||| ||  |||||||||    
T  24409105 actagactttctacccgtgttgccgcacgggtcatatacattgtagatgtagtagataaaaacaaa 24409040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 23353622 - 23353662
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  23353622 actagactttccacccgtgctgccgcacgggtcatatacat 23353662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 6460166 - 6460233
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  6460166 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 6460233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 36076453 - 36076519
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  36076453 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 36076519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 4584434 - 4584499
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  4584434 actagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 4584499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 26949027 - 26948962
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  26949027 actagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 26948962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 38653925 - 38653992
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  38653925 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38653992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 5561551 - 5561593
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    |||||||||  |||||||||||||| |||||||||||||||||    
T  5561551 taactagatcgtctacccgtgctgccgcacgggtcatatacat 5561593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 12264430 - 12264364
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  12264430 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 12264364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 43363610 - 43363676
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  43363610 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 43363676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 1941720 - 1941785
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  1941720 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 1941785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 3898651 - 3898586
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  3898651 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 3898586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 34121584 - 34121519
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  34121584 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34121519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 49672791 - 49672726
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  49672791 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 49672726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 21098533 - 21098493
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  21098533 actagactttccacccgtgctgccgcacgggtcatatacat 21098493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 40014653 - 40014693
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  40014653 actagactttccacccgtgctgccgcacgggtcatatacat 40014693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 46921552 - 46921624
Alignment:
Q  154 ttttcatgtctacacattgtggaaagtttctttgaaaact-acatctgaagtactatcaatgcaaacaccatc 225  Q
    ||||| |||||||||||| |||||  ||| ||| || ||| ||||  ||||||||||||||||||||||||||    
T  46921552 ttttcgtgtctacacattttggaatttttttttaaacacttacattcgaagtactatcaatgcaaacaccatc 46921624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 49506346 - 49506414
Alignment:
Q  19 gtaactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||||| |||| |||||| |||| ||||||||||||||||| | | || ||| || ||||||||||    
T  49506346 gtaactagactttccacccgtactgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 49506414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 1396219 - 1396153
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||| |||||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  1396219 aactatattttccacccgtgctgccgcacgggtcatatacattgcagatgtagcagacaaaaacaaa 1396153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 20655049 - 20655114
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  20655049 actagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 20655114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 2398940 - 2399007
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  2398940 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 2399007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 10729440 - 10729507
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  10729440 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 10729507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 34107336 - 34107403
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  34107336 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34107403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 16526305 - 16526371
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  16526305 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 16526371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 33375986 - 33375928
Alignment:
Q  29 tttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  33375986 tttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 33375928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 38246864 - 38246930
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  38246864 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38246930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 20874917 - 20874852
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  20874917 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 20874852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 25099248 - 25099301
Alignment:
Q  34 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  25099248 acccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 25099301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 25158338 - 25158391
Alignment:
Q  34 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  25158338 acccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 25158391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 34110881 - 34110816
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  34110881 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34110816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 40177270 - 40177205
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  40177270 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 40177205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 8700491 - 8700425
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  8700491 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 8700425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 19596362 - 19596428
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  19596362 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 19596428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 18351782 - 18351715
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  18351782 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 18351715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 27944794 - 27944861
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  27944794 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 27944861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 6120782 - 6120716
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  6120782 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 6120716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 20545055 - 20545014
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  20545055 aactagactttccacccgtgctgccgcacgggtcatatacat 20545014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 41664739 - 41664674
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  41664739 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 41664674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 44902310 - 44902245
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  44902310 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 44902245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 1232025 - 1231960
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | |||| ||| || ||||||||||    
T  1232025 actagactttccacccgtgctgccgcacgggtcatatacattgtaaatatagtagacaaaaacaaa 1231960  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 9216262 - 9216220
Alignment:
Q  20 taactagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    |||||||| |||| ||||||||||| |||||||||||||||||    
T  9216262 taactagactttccacccgtgctgccgcacgggtcatatacat 9216220  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 34888685 - 34888751
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  34888685 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34888751  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 35614289 - 35614231
Alignment:
Q  29 tttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||| ||||||||| | ||||||||||||||||| | |||||||| || ||||||||||    
T  35614289 tttccacccgtgctaccgcacgggtcatatacattgtaaatgtagtagacaaaaacaaa 35614231  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 4266610 - 4266545
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  4266610 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 4266545  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 18706509 - 18706574
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||| ||||||||||| | | |||||| || ||||||||||    
T  18706509 actagactttccacccgtgctgccgcacgagtcatatacattgtagatgtagtagacaaaaacaaa 18706574  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 18855232 - 18855273
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  18855232 aactagactttccacccgtgctgccgcacgggtcatatacat 18855273  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 29942247 - 29942182
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  29942247 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 29942182  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 31018200 - 31018265
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  31018200 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 31018265  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 38913747 - 38913812
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  38913747 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38913812  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 2951366 - 2951406
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  2951366 actagactttccacccgtgctgccgcacgggtcatatacat 2951406  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 29387886 - 29387954
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaat 89  Q
    ||||||||  || |||||| |||| ||||||||||||||||| | || ||||| || ||||||||||||    
T  29387886 aactagatcgtccacccgtactgccgcacgggtcatatacattgtaagtgtagtagacaaaaacaaaat 29387954  T

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Target: scaffold0515 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 6061 - 6101
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  6061 actagattttccacccgtgctgccgcacgggtcatatacat 6101  T

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Target: scaffold0306 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 6071 - 6111
Alignment:
Q  22 actagattttctacccgtgctgcggcacgggtcatatacat 62  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  6071 actagattttccacccgtgctgccgcacgggtcatatacat 6111  T

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Target: scaffold0031 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 46504 - 46438
Alignment:
Q  21 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 87  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  46504 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 46438  T

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