View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2167_high_9 (Length: 241)
Name: NF2167_high_9
Description: NF2167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2167_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 1390680 - 1390860
Alignment:
| Q |
42 |
tggtattttaaacctttgttattcatttgcatcaaatgaaaatgattttccttt---cactgcacattttcaaggtgcagatattaagttgcattctatt |
138 |
Q |
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| T |
1390680 |
tggtattttaaacctttgttattcatttgcatcaaatgaatatgattttcctataatcactgcacattttgaaggtgcagatattaagttgcaatctatt |
1390779 |
T |
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| Q |
139 |
agcacctttgttcaagttgccgatggggttgtttgtttggctcttgtcccatctcgaatcaataaagtcatctttgggaat |
219 |
Q |
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| T |
1390780 |
agcacctttgttcaagttgccgatggggttgtttgtttggctcttgtcccatctcgaatcaataaaggcatctttgggaat |
1390860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 45645847 - 45645899
Alignment:
| Q |
95 |
tcactgcacattttcaaggtgcagatattaagttgcattctattagcaccttt |
147 |
Q |
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| T |
45645847 |
tcaccgcacattttaaaggtgctgatgttgagttgcattctattagtaccttt |
45645899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 34666319 - 34666401
Alignment:
| Q |
72 |
atcaaatgaaaatgattttccttt---cactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttc |
151 |
Q |
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| T |
34666319 |
atcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatattgagttgcattctattagtacctttgttc |
34666401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 19648900 - 19648822
Alignment:
| Q |
95 |
tcactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggttgtttg |
173 |
Q |
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| T |
19648900 |
tcactgcacattttaaaggtgcagatattaagttgaacccaattagtacctttgctcatgttgctgatggtgtggtttg |
19648822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 34646625 - 34646707
Alignment:
| Q |
72 |
atcaaatgaaaatgattttccttt---cactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttc |
151 |
Q |
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| T |
34646625 |
atcaaatgaatatgattttcctataatcaccgtacattttaaaggtgccgatgttgagttgcattctattagtacctttgttc |
34646707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 14201545 - 14201643
Alignment:
| Q |
95 |
tcactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggttgtttgtttggctcttgtcccatctc |
193 |
Q |
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| T |
14201545 |
tcactgcacattttaaaggtgcagatattaaattgtattatattagtacctttattaaagtttctgatgggattgcatgcttggcttttatcccatctc |
14201643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 14183601 - 14183674
Alignment:
| Q |
101 |
cacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggttgtttgt |
174 |
Q |
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| T |
14183601 |
cacattttaaaggtgcggatgttaagttgcatcctattagtacatttgttgatgttgcagatggcattgtttgt |
14183674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 40718360 - 40718420
Alignment:
| Q |
103 |
cattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatg |
163 |
Q |
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| T |
40718360 |
cattttaaaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatg |
40718420 |
T |
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