View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2167_low_1 (Length: 524)
Name: NF2167_low_1
Description: NF2167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2167_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 41 - 401
Target Start/End: Original strand, 26311188 - 26311546
Alignment:
| Q |
41 |
gtccaaagcccttatggagaatgattaacacctagcaggaattggggtcatggaggaaggtgtggttctttgtcggccttgtcttcagggatacctcaga |
140 |
Q |
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| T |
26311188 |
gtccaaagcccttatggagaatgattaacacctagcaggaattggggtcatggaggaaggtgtggttctttgtcggccttgctttcagggatacctcaga |
26311287 |
T |
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| Q |
141 |
actcagctggcgcgatcattcaccggacttcaagaagatatccgcaaaaatactacatctggactcgtgaaaagggagatcatatacagagagattccgc |
240 |
Q |
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| T |
26311288 |
actcagctggcgcgatcattcaccggactccaagaagatatccgcaaaaatactacatctggactcgtgaaaagggagatcatatacagagagattccgc |
26311387 |
T |
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| Q |
241 |
tgatagattttttatctaggatgatcaatatatgtgatattatatatgtatgtttcttggtatatttctttatctggatcatgatgtatgtatgagtctg |
340 |
Q |
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| T |
26311388 |
tgatagattttttatctaggatgatcaatatatgtgatat--tatatgtatgttccttggtatatttatttatctgggtcatgatgtatgtatgagtctg |
26311485 |
T |
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| Q |
341 |
gcctttgtttgtaaccatcaataatacatattaatgctttttatagattcagggtatcggt |
401 |
Q |
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| T |
26311486 |
gcctttgtttgtaaccatcaataatacatattaatgctttttatagattctgggtatcggt |
26311546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 26316461 - 26316754
Alignment:
| Q |
9 |
gaacaatatgaggctagtattaaagatctcaggtccaaagcccttatggagaatgattaacacctagcaggaattggggtcatggaggaaggtgtggttc |
108 |
Q |
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| T |
26316461 |
gaacaaaatgaggctagtattaaagatctcaagtccagagcccatatagagaatgattaacacctatagggaattagggttatggaggaaggtgtggttc |
26316560 |
T |
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| Q |
109 |
tttgtcggccttgtcttcagggatacctcagaactcagctggcgcgatcattcaccggacttcaagaagatatccgcaaaaatactacatctggactcgt |
208 |
Q |
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| T |
26316561 |
tttgtcggccttgttttcagggatacctcagaactcagctggtgcgatcattcacc-gacttcaagaagatatccgcaaaaatactacatctggacacat |
26316659 |
T |
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| Q |
209 |
gaaaagggagatcatatacagagagattccgctgatagattttt-tatctaggatgatcaatatatgtgatattatatatgtatgtttcttggtatattt |
307 |
Q |
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| T |
26316660 |
gaaaagg---------------gagattccgttgatagatttttgaatctaggatgatcaatatatgtgatat--gatatgtatgttccttaatatattt |
26316742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 439 - 507
Target Start/End: Original strand, 26311641 - 26311709
Alignment:
| Q |
439 |
tttaatttgtcgtatcttaatgcgacctagtcaactcgtggcaaccggttcttagccaaaggccagttc |
507 |
Q |
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| T |
26311641 |
tttaatttgtcgtatcttaatgcgacctagtcaacttgtggcaaccagttcttagccaaaggacagttc |
26311709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 26340920 - 26340967
Alignment:
| Q |
329 |
tgtatgagtctggcctttgtttgtaaccatcaataatacatattaatg |
376 |
Q |
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| T |
26340920 |
tgtatgaatctggcctttgtttgtaaccatcaatagtacatattaatg |
26340967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 500
Target Start/End: Original strand, 26341029 - 26341090
Alignment:
| Q |
439 |
tttaatttgtcgtatcttaatgcgacctagtcaactcgtggcaaccggttcttagccaaagg |
500 |
Q |
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| T |
26341029 |
tttactttatcgtatcttaatgcaagctagtctacttgtggcaatcggttcatagccaaagg |
26341090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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