View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2167_low_17 (Length: 235)
Name: NF2167_low_17
Description: NF2167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2167_low_17 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 43170661 - 43170440
Alignment:
| Q |
16 |
caattttgcatgttttttgatgtct--gtgaaaatgattttgcagagttgtgagataactttgaatgccacagatatcttggaatgtttccccttgaatt |
113 |
Q |
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| T |
43170661 |
caattttgcatgttttttgatgtgtttgtgaaaatgattttgcagagttgtgagataactttgaatgccacagatatcttggaatgtttccccttgaatt |
43170562 |
T |
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| Q |
114 |
tattagactggggtagaactggtgtcctttccatagcactcaatgatacagttgttctttgtagtgattccgatggtttctatgattctgttgctctccc |
213 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43170561 |
tattagattggggtagaactggtgtcctttccatagcactcaatgatatagttgttctttgtagtgattccgatggtttctatgattctgttgctctccc |
43170462 |
T |
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| Q |
214 |
tacaacgctggaagatggtcct |
235 |
Q |
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|||||||||||||||||||||| |
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| T |
43170461 |
tacaacgctggaagatggtcct |
43170440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 43217675 - 43217896
Alignment:
| Q |
16 |
caattttgcatgttttttgatgtct--gtgaaaatgattttgcagagttgtgagataactttgaatgccacagatatcttggaatgtttccccttgaatt |
113 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43217675 |
caattttgcatgttttttgatgtgtttgtgaaaatgattttgcagagttgtgagataactttgaatgccacagatatcttggaatgtttccccttgaatt |
43217774 |
T |
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| Q |
114 |
tattagactggggtagaactggtgtcctttccatagcactcaatgatacagttgttctttgtagtgattccgatggtttctatgattctgttgctctccc |
213 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43217775 |
tattagattggggtagaactggtgtcctttccatagcactcaatgatattgttgttctttgtagtgattccgatggtttctatgattctgttgctctccc |
43217874 |
T |
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| Q |
214 |
tacaacgctggaagatggtcct |
235 |
Q |
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| T |
43217875 |
tacaacgctggaagatggtcct |
43217896 |
T |
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Back To:
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