View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2167_low_19 (Length: 223)
Name: NF2167_low_19
Description: NF2167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2167_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 1887968 - 1888177
Alignment:
| Q |
1 |
ttatgcagccaaaagtggtaatgcaagactggaaagcagtccacgaaatcacaaatggggcagaattggtgcaggcggatacaaaactgtcatttgttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
1887968 |
ttatgcagccaaaagtggtaatgcaagactggaaagcagtccacgaaatcacaaatggggcagaattggtgcaggctgatacaaaactgtcatttgtaaa |
1888067 |
T |
|
| Q |
101 |
gaaggcattggcatttatattagagaagaaagcaatccacactacacataatataatatgttagtacagcttacccttatgggaaattttagtacaccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1888068 |
gaaggcattggcatttatattagagaagaaagcaatccacactacacataatataatatgttagtacagcttacccttatgggaaattttagtacaccta |
1888167 |
T |
|
| Q |
201 |
atgatatatg |
210 |
Q |
| |
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|||||||||| |
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| T |
1888168 |
atgatatatg |
1888177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 1895951 - 1896164
Alignment:
| Q |
1 |
ttatgcagccaaaagtggtaatgcaagactggaaagc----agtccacgaaatcacaaatggggcagaattggtgcaggcggatacaaaactgtcatttg |
96 |
Q |
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||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
1895951 |
ttatgcagccaaaagtggtgctgcaggactggaaagctagcagtccacgaaatcacaaacagggcagaattggtgcaggctgatacaaaactgtcatttg |
1896050 |
T |
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| Q |
97 |
ttaagaaggcattggcatttatattagagaagaaagcaatccacactacacataatataatatgttagtacagcttacccttatgggaaattttagtaca |
196 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
1896051 |
taaagaaggcattggcatttatattagagaagaaagcaatccacactacacatagtataatgtgttagtacagcttacccttacgggaaattttagtaca |
1896150 |
T |
|
| Q |
197 |
cctaatgatatatg |
210 |
Q |
| |
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|||| ||||||||| |
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| T |
1896151 |
cctattgatatatg |
1896164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 1905397 - 1905610
Alignment:
| Q |
1 |
ttatgcagccaaaagtggtaatgcaagactggaaagc----agtccacgaaatcacaaatggggcagaattggtgcaggcggatacaaaactgtcatttg |
96 |
Q |
| |
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||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
1905397 |
ttatgcagccaaaagtggtgctgcaggactggaaagctagcagtccacgaaatcacaaacagggcagaattggtgcaggctgatacaaaactgtcatttg |
1905496 |
T |
|
| Q |
97 |
ttaagaaggcattggcatttatattagagaagaaagcaatccacactacacataatataatatgttagtacagcttacccttatgggaaattttagtaca |
196 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
1905497 |
taaagaaggcattggcatttatattagagaagaaagcaatccacactacacatagtataatgtgttagtacagcttacccttacgggaaattttagtaca |
1905596 |
T |
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| Q |
197 |
cctaatgatatatg |
210 |
Q |
| |
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|||| ||||||||| |
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| T |
1905597 |
cctattgatatatg |
1905610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 1890016 - 1890227
Alignment:
| Q |
3 |
atgcagccaaaagtggtaatgcaagactggaaagc----agtccacgaaatcacaaatggggcagaattggtgcaggcggatacaaaactgtcatttgtt |
98 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
1890016 |
atgcagccaaaagtggtgctgcaggactggaaagctagcagtccacgaaatcacaaacagggcagaattggtgcaggctgatacaaaactgtcatttgta |
1890115 |
T |
|
| Q |
99 |
aagaaggcattggcatttatattagagaagaaagcaatccacactacacataatataatatgttagtacagcttacccttatgggaaattttagtacacc |
198 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
1890116 |
aacaaggcattggcatttatattagagaagaaagcaatccacactacacatagtataatgtgttagtacagcttacccttacgggaaattttagtacacc |
1890215 |
T |
|
| Q |
199 |
taatgatatatg |
210 |
Q |
| |
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|||||||||||| |
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| T |
1890216 |
taatgatatatg |
1890227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 1939605 - 1939709
Alignment:
| Q |
1 |
ttatgcagccaaaagtggtaatgcaagactggaaagcagtccacgaaatcacaaatggggcagaattggtgcaggcggatacaaaactgtcatttgttaa |
100 |
Q |
| |
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|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||| || |
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| T |
1939605 |
ttatgcagccaaaactcttgctgcaagactggaaagcagtccacgaaatcacaaatggggcagaattggtgcagactgatacaaaactggcatttgtaaa |
1939704 |
T |
|
| Q |
101 |
gaagg |
105 |
Q |
| |
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||||| |
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|
| T |
1939705 |
gaagg |
1939709 |
T |
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