View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2167_low_2 (Length: 443)
Name: NF2167_low_2
Description: NF2167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2167_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 21 - 443
Target Start/End: Complemental strand, 1915901 - 1915475
Alignment:
| Q |
21 |
taatcatctattttcctctctttcaaaaccaatcaaaaagtttgatgtccaacaacttttgagactctaatatgtttatagtatccaacggcaaccacca |
120 |
Q |
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| T |
1915901 |
taatcatctattttcatctctttcaaaaccaatcaaaaagtttgatgtccaacaacttttgagactctaatatgtttatagtatccaacggcaaccacca |
1915802 |
T |
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| Q |
121 |
ccaccaaaggaa-ggttaattagctaaaccaacatggaaaaacactcaaaaggttttgtccataaaaggccttccactagtcccatgaatatgcacacaa |
219 |
Q |
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| T |
1915801 |
ccaccaaaggaaaggttaattagctaaaccaacatggaaaaacactcaaaaggttttgtccataaaaggccttccactagtcccatgaatatgcacacaa |
1915702 |
T |
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| Q |
220 |
cacaagctagttaactaactcatagcaaaatctactaaacattcatcacaaagccctaattttgccatggcttcctataattccttcattttggcaattt |
319 |
Q |
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| T |
1915701 |
cacaagctagttaactaactcatagcaaaatctactaaacattcatcacaaagccctaattttgccatggcttcctataattccttcattttggcaattt |
1915602 |
T |
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| Q |
320 |
tcattgctatttccttctcaaacatggacattaccctagcagctcgcaatcttcttcagacaacaaatccaaccacacctacacttcaaaaaccaacat- |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
1915601 |
tcattgctatttccttctcaaacatggacattaccctagcagctcgcaatcttcttcagacaacaaatccaactacacctacacttccaaaaccaacatt |
1915502 |
T |
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| Q |
419 |
--tgccacctttgccaacaatccctgc |
443 |
Q |
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| T |
1915501 |
gctgccacctttgccaacaatccctgc |
1915475 |
T |
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