View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2167_low_4 (Length: 375)

Name: NF2167_low_4
Description: NF2167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2167_low_4
NF2167_low_4
[»] chr4 (11 HSPs)
chr4 (40-364)||(18377838-18378164)
chr4 (3-56)||(24968817-24968870)
chr4 (281-336)||(10541411-10541466)
chr4 (1-71)||(52083063-52083134)
chr4 (1-71)||(52094070-52094141)
chr4 (281-333)||(1356349-1356401)
chr4 (281-333)||(8713999-8714051)
chr4 (3-51)||(9927869-9927917)
chr4 (281-333)||(20738486-20738537)
chr4 (4-52)||(34570823-34570871)
chr4 (3-63)||(54200314-54200374)
[»] chr1 (10 HSPs)
chr1 (3-59)||(46064622-46064678)
chr1 (39-102)||(22819928-22819992)
chr1 (281-333)||(20582334-20582386)
chr1 (3-48)||(3156582-3156627)
chr1 (11-56)||(16455353-16455398)
chr1 (281-333)||(11172647-11172699)
chr1 (281-333)||(13234623-13234675)
chr1 (281-333)||(14246543-14246595)
chr1 (281-333)||(40400764-40400816)
chr1 (281-333)||(40535950-40536002)
[»] chr8 (12 HSPs)
chr8 (3-131)||(3051562-3051692)
chr8 (3-57)||(10929511-10929565)
chr8 (3-75)||(4283016-4283088)
chr8 (3-56)||(10014866-10014919)
chr8 (281-333)||(42687082-42687134)
chr8 (3-121)||(33351790-33351910)
chr8 (3-51)||(1345779-1345827)
chr8 (281-333)||(2827554-2827606)
chr8 (281-333)||(11588840-11588892)
chr8 (281-333)||(12713420-12713472)
chr8 (281-333)||(34918176-34918228)
chr8 (281-333)||(37578963-37579015)
[»] chr7 (9 HSPs)
chr7 (6-56)||(6570300-6570350)
chr7 (2-63)||(46515904-46515965)
chr7 (39-121)||(47676601-47676685)
chr7 (281-333)||(25877544-25877596)
chr7 (5-52)||(496404-496451)
chr7 (283-333)||(42094796-42094846)
chr7 (281-333)||(38282959-38283011)
chr7 (281-333)||(39073684-39073736)
chr7 (281-333)||(47778798-47778850)
[»] chr3 (15 HSPs)
chr3 (39-121)||(36018263-36018347)
chr3 (39-121)||(29810487-29810571)
chr3 (281-333)||(26091085-26091137)
chr3 (39-121)||(29812682-29812766)
chr3 (281-333)||(7149263-7149315)
chr3 (281-333)||(19942483-19942535)
chr3 (281-333)||(20049048-20049100)
chr3 (281-333)||(20656550-20656602)
chr3 (3-63)||(24694751-24694811)
chr3 (281-333)||(32237039-32237091)
chr3 (39-75)||(43402473-43402509)
chr3 (39-75)||(43404416-43404452)
chr3 (3-51)||(44331281-44331329)
chr3 (281-333)||(52813832-52813884)
chr3 (3-55)||(53921894-53921946)
[»] chr2 (6 HSPs)
chr2 (3-56)||(40015347-40015400)
chr2 (39-121)||(35447566-35447649)
chr2 (3-56)||(5723662-5723716)
chr2 (3-52)||(36318417-36318466)
chr2 (281-333)||(4072595-4072647)
chr2 (281-333)||(35896494-35896546)
[»] chr6 (6 HSPs)
chr6 (3-52)||(26954711-26954760)
chr6 (1-55)||(21272593-21272647)
chr6 (3-52)||(22964139-22964188)
chr6 (3-52)||(23824205-23824254)
chr6 (39-75)||(603702-603738)
chr6 (3-63)||(33160762-33160823)
[»] chr5 (10 HSPs)
chr5 (3-71)||(535595-535663)
chr5 (3-56)||(39468940-39468993)
chr5 (3-75)||(533469-533541)
chr5 (281-333)||(43517586-43517638)
chr5 (3-56)||(19806113-19806166)
chr5 (3-52)||(38746481-38746530)
chr5 (281-333)||(6468997-6469049)
chr5 (3-70)||(13342753-13342821)
chr5 (281-333)||(19616906-19616958)
chr5 (281-333)||(36294746-36294798)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 40 - 364
Target Start/End: Original strand, 18377838 - 18378164
Alignment:
Q  40 aaatcgtgtcacgattgaacaccca-aaaaacatgcttcctgccaagaaaattgtgacacgcttgcataatcatgtcacgattttgagctttcatccatc 138  Q
    |||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18377838 aaatcgtgtcacaattgaacacccagaaaaacatgcttcctgccgagaaaattgtgacacgcttgcataatcgtgtcacgattttgagctttcatccatc 18377937  T
Q  139 cacaatttgaaggcaaatttaaacaaaaccgcttatgannnnnnnnncatcaatcattttt-atggttgctataagttattttgtgagcctctctattct 237  Q
    ||||||||||||||||||||||||||||||||||||||         |||||||||||||| |  |||||||||||||||||||||||||||||||||||    
T  18377938 cacaatttgaaggcaaatttaaacaaaaccgcttatgatttttttttcatcaatcattttttacagttgctataagttattttgtgagcctctctattct 18378037  T
Q  238 ctttggacaatttctattttctagttacatcccaaacacatccggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttttatg 337  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  18378038 ctttggacaatttctattttctagttacatcccaaacatatccggttacacccaaatctttttaaaagttattcataatactaaaattgtcctttttatg 18378137  T
Q  338 ggtttttgaaaaaacaatctttggtct 364  Q
    |||||||||||||||||||||||||||    
T  18378138 ggtttttgaaaaaacaatctttggtct 18378164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 24968870 - 24968817
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattg 56  Q
    ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||    
T  24968870 gaccaaccttatcctgaaaacgtgtcaagcatgctaaatatcgtgtcacgattg 24968817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 336
Target Start/End: Original strand, 10541411 - 10541466
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttttat 336  Q
    |||||||||||||| || ||||||||| || |||||||||||| || |||||||||    
T  10541411 ggttacacccaaattttcttaaaagttttttataataccaaaattgccctttttat 10541466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 52083063 - 52083134
Alignment:
Q  1 atgaccaactttatcctgaaaa-cgtgtcaagcatgccaaaaatcgtgtcacgattgaacacccaaaaaaca 71  Q
    ||||||||| |||||||||||| | || | | || |||||||||||||||||||||| |||||| |||||||    
T  52083063 atgaccaaccttatcctgaaaatcttgcccaacaagccaaaaatcgtgtcacgattggacaccctaaaaaca 52083134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 52094070 - 52094141
Alignment:
Q  1 atgaccaactttatcctgaaaa-cgtgtcaagcatgccaaaaatcgtgtcacgattgaacacccaaaaaaca 71  Q
    ||||||||| |||||||||||| | || | | || |||||||||||||||||||||| |||||| |||||||    
T  52094070 atgaccaaccttatcctgaaaatcttgcccaacaagccaaaaatcgtgtcacgattggacaccctaaaaaca 52094141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 1356349 - 1356401
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| || ||||||    
T  1356349 ggttacacccaaattttcttaaaagttttttataataccaaaattgccctttt 1356401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 8714051 - 8713999
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| |  ||||||||| || |||||||||||| |||||||||    
T  8714051 ggttacacccaaatttccttaaaagttttttataataccaaaattgtcctttt 8713999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 9927869 - 9927917
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcac 51  Q
    ||||||| ||||||||||||| |||| |||| ||| |||||||||||||    
T  9927869 gaccaaccttatcctgaaaacttgtccagcaagccgaaaatcgtgtcac 9927917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 20738537 - 20738486
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| |||||||||||| || |||||||||||| || ||||||    
T  20738537 ggttacacccaaatttttttaaaagtt-tttataataccaaaattgccctttt 20738486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 34570823 - 34570871
Alignment:
Q  4 accaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacg 52  Q
    |||||| ||||||||||||| |||| |||| ||| ||||||||||||||    
T  34570823 accaaccttatcctgaaaacttgtccagcaagccgaaaatcgtgtcacg 34570871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 54200314 - 54200374
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattgaacaccc 63  Q
    ||||||| ||||| ||||||| || | |||| ||| |||||||||||||||||| ||||||    
T  54200314 gaccaaccttatcttgaaaacttgcccagcaagccgaaaatcgtgtcacgattggacaccc 54200374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 46064678 - 46064622
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattgaac 59  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||    
T  46064678 gaccaactttatcctgaaaatgtgccaagcatgccaaaaatcgtgtcacggttgaac 46064622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 22819928 - 22819992
Alignment:
Q  39 aaaatcgtgtcacgattgaacaccc-aaaaaacatgcttcctgccaagaaaattgtgacacgctt 102  Q
    |||||| |||||| ||||||||||  ||||||||||||||||||||||| ||| |||||||||||    
T  22819928 aaaatcatgtcaccattgaacaccagaaaaaacatgcttcctgccaagagaatcgtgacacgctt 22819992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 20582386 - 20582334
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| |||||||||    
T  20582386 ggttacacccaaattttcttaaaagttttttataataccaaaattgtcctttt 20582334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 3156627 - 3156582
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgt 48  Q
    ||||||| |||||||||||||||||| ||||  |||||||||||||    
T  3156627 gaccaaccttatcctgaaaacgtgtccagcaaaccaaaaatcgtgt 3156582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 16455398 - 16455353
Alignment:
Q  11 ttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattg 56  Q
    |||||||||||||||| ||| ||| ||||||||| |||||||||||    
T  16455398 ttatcctgaaaacgtgccaaacataccaaaaatcatgtcacgattg 16455353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 11172647 - 11172699
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| || ||||||    
T  11172647 ggttacacccaaattttcttaaaagttttttataataccaaaattgccctttt 11172699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 13234623 - 13234675
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| || ||||||    
T  13234623 ggttacacccaaattttcttaaaagttttttataataccaaaattgccctttt 13234675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 14246543 - 14246595
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    ||||||| |||||| |||||||||||| || |||||||||||| || ||||||    
T  14246543 ggttacatccaaatttttttaaaagttttttataataccaaaattgccctttt 14246595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 40400816 - 40400764
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| || ||||||    
T  40400816 ggttacacccaaattttcttaaaagttttttataataccaaaattgccctttt 40400764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 40535950 - 40536002
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| || ||||||    
T  40535950 ggttacacccaaattttcttaaaagttttttataataccaaaattgccctttt 40536002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 3051562 - 3051692
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattgaacaccca--aaaaacatgcttcctgccaagaaaattgtgacacgc 100  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||| | |  |||| ||||||  | | | ||||||| |||||||||    
T  3051562 gaccaaccttatcttgaaaacgtgtcaaacatgccaaaaatcgtgtcacaattgaacatcaaacaaaaccatgctcacggtctagaaaatcgtgacacgc 3051661  T
Q  101 ttgcataatcatgtcacgattttgagctttc 131  Q
     | |  ||||||||||||||| ||| |||||    
T  3051662 ctaccaaatcatgtcacgattctgaactttc 3051692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 10929565 - 10929511
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattga 57  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||    
T  10929565 gaccaaccttatcctcaaaacgtgtcaagcatgccaaaaatcgtatcacgattga 10929511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 4283088 - 4283016
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattgaacacccaaaaaacatgct 75  Q
    ||||||| ||||||||||||| || | |||| ||| |||||||||||||||||||||| ||| ||||||||||    
T  4283088 gaccaaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcacgattgaacatccagaaaacatgct 4283016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 10014919 - 10014866
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattg 56  Q
    ||||||| |||||||| ||||||| ||||||||||||||||||||||| |||||    
T  10014919 gaccaaccttatcctgtaaacgtgccaagcatgccaaaaatcgtgtcatgattg 10014866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 42687082 - 42687134
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||| | |||||||||||| || |||||||||||| |||||||||    
T  42687082 ggttacacccaattttttttaaaagtttttgataataccaaaattgtcctttt 42687134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 33351910 - 33351790
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattgaacaccc--aaaaaacatgcttcctgccaagaaaattgtgacacgc 100  Q
    ||||||| |||||||||| || ||||| |  | || |||||||||||||||||| ||||||   |||| |||| |  ||||| | ||||| |||||||||    
T  33351910 gaccaaccttatcctgaatacttgtcatgttttcccaaaatcgtgtcacgattggacaccctgcaaaaccatgttcactgcctaaaaaatcgtgacacgc 33351811  T
Q  101 ttgcataatcatgtcacgatt 121  Q
    ||||  |||| ||||||||||    
T  33351810 ttgctaaatcgtgtcacgatt 33351790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 1345779 - 1345827
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcac 51  Q
    ||||||| ||||||||||||||||||||||| ||  ||||| |||||||    
T  1345779 gaccaaccttatcctgaaaacgtgtcaagcaagctgaaaattgtgtcac 1345827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 2827554 - 2827606
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||| ||||| |||||||||||| || || ||||||||| |||||||||    
T  2827554 ggttacactcaaatatttttaaaagttttttatgataccaaaattgtcctttt 2827606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 11588892 - 11588840
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| || ||||||    
T  11588892 ggttacacccaaattttcttaaaagttttttataataccaaaattgccctttt 11588840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 12713420 - 12713472
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||| ||||| |||||||||    
T  12713420 ggttacacccaaattttcttaaaagttttttataatatcaaaattgtcctttt 12713472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 34918228 - 34918176
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || |||||| || || |||||||||||| |||||||||    
T  34918228 ggttacacccaaattttcttaaaatttttttataataccaaaattgtcctttt 34918176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 37579015 - 37578963
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| || ||||||    
T  37579015 ggttacacccaaattttcttaaaagttttttataataccaaaattgccctttt 37578963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 6570350 - 6570300
Alignment:
Q  6 caactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattg 56  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  6570350 caaccttatcctaaaaacgtgtcaagcatgccaaaaatcgtgtcacgattg 6570300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 46515965 - 46515904
Alignment:
Q  2 tgaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattgaacaccc 63  Q
    |||||||| |||||||||||||||| | | || ||||||||||||| ||||||||| |||||    
T  46515965 tgaccaaccttatcctgaaaacgtgcccaacaagccaaaaatcgtgacacgattgagcaccc 46515904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 47676601 - 47676685
Alignment:
Q  39 aaaatcgtgtcacgattgaacaccca--aaaaacatgcttcctgccaagaaaattgtgacacgcttgcataatcatgtcacgatt 121  Q
    |||||||||||||||||| ||||||   |||| ||||||  ||||| ||||||| |||||||||||||  |||||||||| ||||    
T  47676601 aaaatcgtgtcacgattggacaccctgcaaaaccatgctcactgcctagaaaatcgtgacacgcttgctaaatcatgtcatgatt 47676685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 25877596 - 25877544
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| |||||||||    
T  25877596 ggttacacccaaattttcttaaaagttttttataataccaaaattgtcctttt 25877544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 496404 - 496451
Alignment:
Q  5 ccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacg 52  Q
    ||||| |||||||||||| ||||||||||||||||||| |||| ||||    
T  496404 ccaaccttatcctgaaaatgtgtcaagcatgccaaaaaccgtgacacg 496451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 42094796 - 42094846
Alignment:
Q  283 ttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||| |||||||||||| || |||||||||||| || ||||||    
T  42094796 ttacacccaaatttttttaaaagttttttataataccaaaattgccctttt 42094846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 38282959 - 38283011
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| || ||||||    
T  38282959 ggttacacccaaattttcttaaaagttttttataataccaaaattgccctttt 38283011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 39073684 - 39073736
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| || ||||||    
T  39073684 ggttacacccaaattttcttaaaagttttttataataccaaaattgccctttt 39073736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 47778798 - 47778850
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| ||| |||||    
T  47778798 ggttacacccaaattttcttaaaagttttttataataccaaaattgtactttt 47778850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 36018347 - 36018263
Alignment:
Q  39 aaaatcgtgtcacgattgaacaccca--aaaaacatgcttcctgccaagaaaattgtgacacgcttgcataatcatgtcacgatt 121  Q
    ||||||||||||||||||| ||||||  ||||| |||||  ||||| ||||||| ||||||||||||| ||||| ||||||||||    
T  36018347 aaaatcgtgtcacgattgagcacccagaaaaaatatgctcactgcctagaaaatcgtgacacgcttgcgtaatcgtgtcacgatt 36018263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 29810571 - 29810487
Alignment:
Q  39 aaaatcgtgtcacgattgaacaccca--aaaaacatgcttcctgccaagaaaattgtgacacgcttgcataatcatgtcacgatt 121  Q
    |||||||||||||||||| ||||||   |||| ||||||   |||| |||||||||||||||||||||  |||||||||||||||    
T  29810571 aaaatcgtgtcacgattggacaccctgcaaaaccatgctcaatgcctagaaaattgtgacacgcttgctaaatcatgtcacgatt 29810487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 26091137 - 26091085
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| |||||||||    
T  26091137 ggttacacccaaattttcttaaaagttttttataataccaaaattgtcctttt 26091085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 29812766 - 29812682
Alignment:
Q  39 aaaatcgtgtcacgattgaacaccc--aaaaaacatgcttcctgccaagaaaattgtgacacgcttgcataatcatgtcacgatt 121  Q
    |||||||||||||||||| ||||||   |||| ||||||  ||||| ||||||| ||||||| |||||  |||| ||||||||||    
T  29812766 aaaatcgtgtcacgattggacaccctgcaaaaccatgctcactgcctagaaaatcgtgacacacttgctaaatcgtgtcacgatt 29812682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 7149263 - 7149315
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| || ||||||    
T  7149263 ggttacacccaaattttcttaaaagttttttataataccaaaattgccctttt 7149315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 19942535 - 19942483
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||| | |||||||||||| || ||||||| |||| |||||||||    
T  19942535 ggttacacccaattttttttaaaagtttttgataatactaaaattgtcctttt 19942483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 20049100 - 20049048
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| ||| |||||    
T  20049100 ggttacacccaaattttcttaaaagttttttataataccaaaattgttctttt 20049048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 20656550 - 20656602
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||| ||||| |||||||||    
T  20656550 ggttacacccaaattttcttaaaagttttttataatatcaaaattgtcctttt 20656602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 24694811 - 24694751
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattgaacaccc 63  Q
    ||||||| |||||||||||||||||| |||| |  ||||||||||  ||||||| ||||||    
T  24694811 gaccaaccttatcctgaaaacgtgtccagcaagttaaaaatcgtgatacgattggacaccc 24694751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 32237091 - 32237039
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| || ||||||    
T  32237091 ggttacacccaaattttcttaaaagttttttataataccaaaattgccctttt 32237039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 43402473 - 43402509
Alignment:
Q  39 aaaatcgtgtcacgattgaacacccaaaaaacatgct 75  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  43402473 aaaatcgtgtcacgattgaacatccagaaaacatgct 43402509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 43404416 - 43404452
Alignment:
Q  39 aaaatcgtgtcacgattgaacacccaaaaaacatgct 75  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  43404416 aaaatcgtgtcacgattgaacatccagaaaacatgct 43404452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 44331329 - 44331281
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcac 51  Q
    ||||||| |||||||||||||||  | |||| |||||||||||||||||    
T  44331329 gaccaaccttatcctgaaaacgtacccagcaagccaaaaatcgtgtcac 44331281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 52813884 - 52813832
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||| | |||| ||||||| || |||||||||||| |||||||||    
T  52813884 ggttacacccaatttttttaaaaagtttttgataataccaaaactgtcctttt 52813832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 53921894 - 53921946
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgatt 55  Q
    ||||||| ||||||||||||| |||||| |||   ||||||||||||||||||    
T  53921894 gaccaaccttatcctgaaaacttgtcaaacatattaaaaatcgtgtcacgatt 53921946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 40015347 - 40015400
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattg 56  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||||||||||    
T  40015347 gaccaacattatcatgaaaacgtgtcaatcatgccaaaaatcgtgtcacgattg 40015400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 35447566 - 35447649
Alignment:
Q  39 aaaatcgtgtcacgattgaacacccaaaaaaca-tgcttcctgccaagaaaattgtgacacgcttgcataatcatgtcacgatt 121  Q
    |||||||||| || |||||||||||  |||||| ||||  ||||| |||||||  |||||||||||| ||||||||||| ||||    
T  35447566 aaaatcgtgttacaattgaacaccctgaaaacaatgctcactgcctagaaaatcatgacacgcttgcgtaatcatgtcatgatt 35447649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 5723662 - 5723716
Alignment:
Q  3 gaccaactttatcctgaaaa-cgtgtcaagcatgccaaaaatcgtgtcacgattg 56  Q
    ||||||| |||||||||||| | |||| |||| ||||||||||||||||||||||    
T  5723662 gaccaaccttatcctgaaaatcttgtccagcaagccaaaaatcgtgtcacgattg 5723716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 36318417 - 36318466
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacg 52  Q
    ||||||| |||||||||||||||| | |||| ||| ||||||||||||||    
T  36318417 gaccaaccttatcctgaaaacgtggccagcaagccgaaaatcgtgtcacg 36318466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 4072595 - 4072647
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||| | |||| ||||||| || |||||||||||| |||||||||    
T  4072595 ggttacacccaatttttttaaaaagtttttgataataccaaaattgtcctttt 4072647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 35896546 - 35896494
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| || ||||||    
T  35896546 ggttacacccaaattttcttaaaagttttttataataccaaaattgccctttt 35896494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 26954711 - 26954760
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacg 52  Q
    ||||||| |||||||||||| |||||||||||||||||||||||| ||||    
T  26954711 gaccaaccttatcctgaaaatgtgtcaagcatgccaaaaatcgtgacacg 26954760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21272647 - 21272593
Alignment:
Q  1 atgaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgatt 55  Q
    ||||||||| |||||||||||||||| ||| |||| ||||||||||| |||||||    
T  21272647 atgaccaaccttatcctgaaaacgtgccaaacatgtcaaaaatcgtgacacgatt 21272593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 22964139 - 22964188
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacg 52  Q
    ||||||| ||||||||||||| |||| |||| ||||||||||||||||||    
T  22964139 gaccaaccttatcctgaaaacttgtccagcaagccaaaaatcgtgtcacg 22964188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 23824254 - 23824205
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacg 52  Q
    ||||||| ||||||||||||| |||| |||| ||||||||||||||||||    
T  23824254 gaccaaccttatcctgaaaacttgtccagcaagccaaaaatcgtgtcacg 23824205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 603702 - 603738
Alignment:
Q  39 aaaatcgtgtcacgattgaacacccaaaaaacatgct 75  Q
    |||||||||||||||||||||| ||||||||||||||    
T  603702 aaaatcgtgtcacgattgaacatccaaaaaacatgct 603738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 33160762 - 33160823
Alignment:
Q  3 gaccaactttatcctgaaaa-cgtgtcaagcatgccaaaaatcgtgtcacgattgaacaccc 63  Q
    ||||||| |||||||||||| | || | |||| |||||||||||||||||||||| ||||||    
T  33160762 gaccaaccttatcctgaaaatcttgcccagcaagccaaaaatcgtgtcacgattggacaccc 33160823  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 535663 - 535595
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattgaacacccaaaaaaca 71  Q
    ||||||| ||||||||||||| |||| |||| ||| ||||||||||||||| |||||| ||| ||||||    
T  535663 gaccaaccttatcctgaaaacttgtccagcaagccgaaaatcgtgtcacgactgaacatccagaaaaca 535595  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 39468940 - 39468993
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattg 56  Q
    ||||||| ||||||| |||||||||| |||| ||| ||||||||||||||||||    
T  39468940 gaccaaccttatcctaaaaacgtgtccagcaagccgaaaatcgtgtcacgattg 39468993  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 533541 - 533469
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattgaacacccaaaaaacatgct 75  Q
    ||||||| ||||||||||||| || | |||| ||| |||| |||||||||||||||||  || ||||||||||    
T  533541 gaccaaccttatcctgaaaacttgcccagcaagccgaaaaccgtgtcacgattgaacatgcagaaaacatgct 533469  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 43517586 - 43517638
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| |||||||||    
T  43517586 ggttacacccaaattttcttaaaagttttttataataccaaaattgtcctttt 43517638  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 19806166 - 19806113
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacgattg 56  Q
    ||||||| ||||||| |||||||| | |||| ||| ||||||||||||||||||    
T  19806166 gaccaaccttatcctaaaaacgtgcctagcaagccgaaaatcgtgtcacgattg 19806113  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 38746530 - 38746481
Alignment:
Q  3 gaccaactttatcctgaaaacgtgtcaagcatgccaaaaatcgtgtcacg 52  Q
    ||||||| ||||||||||||| |||| |||| ||| ||||||||||||||    
T  38746530 gaccaaccttatcctgaaaacttgtccagcaagccgaaaatcgtgtcacg 38746481  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 6468997 - 6469049
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| || ||||||    
T  6468997 ggttacacccaaattttcttaaaagttttttataataccaaaattgccctttt 6469049  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 13342821 - 13342753
Alignment:
Q  3 gaccaactttatcctgaaaa-cgtgtcaagcatgccaaaaatcgtgtcacgattgaacacccaaaaaac 70  Q
    ||||||| |||||||||||| | || | |||| |||||||||||||||||||||| || ||| ||||||    
T  13342821 gaccaaccttatcctgaaaatcttgcccagcaagccaaaaatcgtgtcacgattggacgccctaaaaac 13342753  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 19616906 - 19616958
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    |||||||||||||| || ||||||||| || |||||||||||| || ||||||    
T  19616906 ggttacacccaaattttcttaaaagttttttataataccaaaattgccctttt 19616958  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 36294798 - 36294746
Alignment:
Q  281 ggttacacccaaatctttttaaaagttattcataataccaaaaatgtcctttt 333  Q
    ||||||| |||||| || ||||||||| || |||||||||||| |||||||||    
T  36294798 ggttacatccaaattttcttaaaagtttttgataataccaaaattgtcctttt 36294746  T

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