View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2167_low_6 (Length: 343)
Name: NF2167_low_6
Description: NF2167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2167_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 38645286 - 38644974
Alignment:
| Q |
1 |
agagataaaacaaaattattttaatttgaaaatcaattttggatatattgtgattgaaaagattatgtgttctcactattaatttcatcagatgctaaca |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38645286 |
agagataaaacaaa-ttattttaatttgaaaatcaattttggatatattgtgattgaaaagattatgtgttctcactattaatttcatcatatgctaacc |
38645188 |
T |
|
| Q |
101 |
attgatcatatcttgcggttatattttgttcctcacatgtgaactacatgacccctgcctcaccatagcattcaccaaaaagg------aattgttcaaa |
194 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
38645187 |
atcgatcatatcttgcggttatattttgttcctcacatgtgaagtacatgacccctgtctcaccatagcattcaccaaaaagggatacttattgttcaaa |
38645088 |
T |
|
| Q |
195 |
caagttacaggtgaatcatctttgccgcacaataaataaaataatatatctaatggtgcaaactcaatttgcaccgtgagagacctgttttgagcggtca |
294 |
Q |
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|||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
38645087 |
caagttacaggtgaatcatcttgaccgcacaataaat-aattaatatatctaatggtgcaaactcaatttgcaccgtgagagacctgttttggtcgctca |
38644989 |
T |
|
| Q |
295 |
cgctagcctccgccc |
309 |
Q |
| |
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||||||||||||||| |
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| T |
38644988 |
cgctagcctccgccc |
38644974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 13610321 - 13610029
Alignment:
| Q |
13 |
aaattattttaatttgaaaatcaattttggatatattgtgattgaaaagat----tatgtgttctcactattaatttcatcagatgctaacaattgatca |
108 |
Q |
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|||||||||||||||||||||||||||| ||| |||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13610321 |
aaattattttaatttgaaaatcaatttttgattaattgagtttgaaaagaaaatatatgtgttctcactattaatttcatcagaagctaacaattgatca |
13610222 |
T |
|
| Q |
109 |
tatcttgcggttatattttgttcctcacatgtgaactacatgacccctgcctcaccatagcattcaccaaaaaggaattgttcaaacaagttacaggtga |
208 |
Q |
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| T |
13610221 |
tatcttgcggttatattttgtt-ctcacatgtgaactacatgacccctacctcaccatagcattcaccaaaatgggatactt-----attcttcaaaaga |
13610128 |
T |
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| Q |
209 |
atcatctttgccgcacaataaataaaataatatatctaatggtgcaaactcaatttgcaccgtgagagacctgttttgagcggtcacgctagcctccgcc |
308 |
Q |
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| T |
13610127 |
atcatcttgaccacataataaat-aattaatatatccaatggtgaaaattcaatttgcactgtgagagacctgttttggtcgctcacgctagcctccgcc |
13610029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 33641802 - 33641507
Alignment:
| Q |
13 |
aaattattttaatttgaaaatcaattttggatatattgtgattgaaaagat----tatgtgttctcactattaatttcatcagatgctaacaattgatca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33641802 |
aaattattttaatttgaaaatcaatttttgattaattgtgtttgaaaagaaaatatatgtgttctcactattaatttcatcagaagctaacaattgatca |
33641703 |
T |
|
| Q |
109 |
tatcttgcggttatattttgttcctcacatgtgaactacatgacccctgcctcaccatagcattcaccaaaaaggaattgttcaaacaagttacaggtga |
208 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| || || || | | || || |
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| T |
33641702 |
tatcttgcggttatattttgtt-ctcacatgtgaagtacatgacccctgcctcaccatagcattcacccaaatgggatactt-----attcttcaaaaga |
33641609 |
T |
|
| Q |
209 |
atcatctttgccgcacaataaataaaataatatatctaatggtgcaaactcaatttgcaccgtgagagacctgttttgagcggtcacgctagcctccgcc |
308 |
Q |
| |
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|||||||| || || ||||||| || ||||||||| ||||||| ||| |||||||||| |||||||||||||||||| || ||||||| ||||||||| |
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| T |
33641608 |
atcatcttgaccacataataaat-aattaatatatccaatggtgaaaattcaatttgcatcgtgagagacctgttttggtcgctcacgctggcctccgcc |
33641510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 54131467 - 54131172
Alignment:
| Q |
13 |
aaattattttaatttgaaaatcaattttggatatattgtgattgaaaagattat----gtgttctcactattaatttcatcagatgctaacaattgatca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| | ||||||||| || |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54131467 |
aaattattttaatttgaaaatcaatttttgattaattgagtttgaaaagaaaatatacgtgttctcactattaatttcatcagaagctaacaattgatca |
54131368 |
T |
|
| Q |
109 |
tatcttgcggttatattttgttcctcacatgtgaactacatgacccctgcctcaccatagcattcaccaaaaaggaattgttcaaacaagttacaggtga |
208 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| || || || | | || || |
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| T |
54131367 |
tatcttgcggttatattttgtt-ctcacatgtgaattacatgacccctacctcaccatagcattcaccaaaatgggatactt-----attcttcaaaaga |
54131274 |
T |
|
| Q |
209 |
atcatctttgccgcacaataaataaaataatatatctaatggtgcaaactcaatttgcaccgtgagagacctgttttgagcggtcacgctagcctccgcc |
308 |
Q |
| |
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|||||||| || || ||||||| || ||||||||| ||||||| ||| |||||||||||||||||||| |||||||| || ||||||||||||||||| |
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| T |
54131273 |
atcatcttgaccacataataaat-aattaatatatccaatggtgaaaattcaatttgcaccgtgagagatctgttttggtcgctcacgctagcctccgcc |
54131175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 23508368 - 23508471
Alignment:
| Q |
79 |
ttaatttcatcagatgctaacaattgatcatatcttgcggttatattttgttcctcacatgtgaactacatgacccctgcctcaccatagcattcaccaa |
178 |
Q |
| |
|
|||||||| |||||| | || ||||||||||||| |||||||||||||||| ||||| ||||| ||| | |||||| ||||||||||||||||||||| |
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| T |
23508368 |
ttaatttcctcagatcatgaccattgatcatatctcacggttatattttgttcatcacaagtgaagtactttacccctacctcaccatagcattcaccaa |
23508467 |
T |
|
| Q |
179 |
aaag |
182 |
Q |
| |
|
|||| |
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|
| T |
23508468 |
aaag |
23508471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 30731231 - 30731181
Alignment:
| Q |
236 |
taatatatctaatggtgcaaactcaatttgcaccgtgagagacctgttttg |
286 |
Q |
| |
|
||||||||||||||| | ||| |||||||||||||||| |||| ||||||| |
|
|
| T |
30731231 |
taatatatctaatggcgaaaaatcaatttgcaccgtgaaagacatgttttg |
30731181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 5969379 - 5969429
Alignment:
| Q |
236 |
taatatatctaatggtgcaaactcaatttgcaccgtgagagacctgttttg |
286 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||||||||||| ||||||| |
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|
| T |
5969379 |
taatatatctaatggtgaaaaatcaatttggaccgtgagagacatgttttg |
5969429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 46089686 - 46089728
Alignment:
| Q |
236 |
taatatatctaatggtgcaaactcaatttgcaccgtgagagac |
278 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||||||||||| |
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|
| T |
46089686 |
taatatatctagtggtgaaaaatcaatttgcaccgtgagagac |
46089728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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