View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2167_low_9 (Length: 332)

Name: NF2167_low_9
Description: NF2167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2167_low_9
NF2167_low_9
[»] chr4 (2 HSPs)
chr4 (236-318)||(51682794-51682876)
chr4 (236-290)||(30164082-30164133)
[»] chr6 (2 HSPs)
chr6 (232-314)||(1100083-1100162)
chr6 (228-314)||(18101319-18101402)
[»] chr3 (2 HSPs)
chr3 (230-314)||(24163115-24163196)
chr3 (230-314)||(55201112-55201193)
[»] chr8 (2 HSPs)
chr8 (228-318)||(31146406-31146493)
chr8 (234-314)||(12295420-12295496)


Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 51682794 - 51682876
Alignment:
Q  236 aagatgagaagttgaatggatgattgaggatagcatgtggaaaggcacatgtgttatgtaaaataagttttttaatctaaacc 318  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||| ||||    
T  51682794 aagattagaagttgaatggatgattgaggatagcatgtggaaagacacatgtgttatctaaaatatgttttttaatcttaacc 51682876  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 30164082 - 30164133
Alignment:
Q  236 aagatgagaagttgaatggatgattgaggatagcatgtggaaaggcacatgtgtt 290  Q
    |||||||||||||||||||||   ||||||||||||||||||||||| |||||||    
T  30164082 aagatgagaagttgaatggat---tgaggatagcatgtggaaaggcatatgtgtt 30164133  T

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Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 232 - 314
Target Start/End: Complemental strand, 1100162 - 1100083
Alignment:
Q  232 agagaagatgagaagttgaatggatgattgaggatagcatgtggaaaggcacatgtgttatgtaaaataagttttttaatcta 314  Q
    ||||||||||||||| |||||||||   ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  1100162 agagaagatgagaaggtgaatggat---tgaggatagcatgtggaaaggcatatgtgttatctaaaataagttttttaatcta 1100083  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 314
Target Start/End: Original strand, 18101319 - 18101402
Alignment:
Q  228 ggttagagaagatgagaagttgaatggatgattgaggatagcatgtggaaaggcacatgtgttatgtaaaataagttttttaatcta 314  Q
    |||| |||||||| |||||||||||    | |||| |||||||||||||||||||    |||||| |||||||||| ||||||||||    
T  18101319 ggttggagaagatcagaagttgaat---aggttgatgatagcatgtggaaaggcatgcttgttatttaaaataagtattttaatcta 18101402  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 24163115 - 24163196
Alignment:
Q  230 ttagagaagatgagaagttgaatggatgattgaggatagcatgtggaaaggcacatgtgttatgtaaaataagttttttaatcta 314  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||| || ||||||||  |||||||||||||||||||||    
T  24163115 ttagagaagatgagaagttgaatggat---tgaggatagcatgtggaaagacatatgtgttaactaaaataagttttttaatcta 24163196  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 55201193 - 55201112
Alignment:
Q  230 ttagagaagatgagaagttgaatggatgattgaggatagcatgtggaaaggcacatgtgttatgtaaaataagttttttaatcta 314  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||| || || |||||  |||||||||||||||||||||    
T  55201193 ttagagaagatgagaagttgaatggat---tgaggatagcatgtggaaagacatatctgttaactaaaataagttttttaatcta 55201112  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 31146493 - 31146406
Alignment:
Q  228 ggttagagaagatgagaagttgaatggatgattgaggatagcatgtggaaaggcacatgtgttatgtaaaataagttttttaatctaaacc 318  Q
    |||| |||||||||||||| ||||||| |   ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||    
T  31146493 ggttggagaagatgagaaggtgaatgggt---tgaggatagcatgtgaaaaggcacatgtgttatataaattaagttttttaatctaaacc 31146406  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 12295496 - 12295420
Alignment:
Q  234 agaagatgagaagttgaatggatgattgaggatagcatgtggaaaggcacatgtgttatgtaaaataagttttttaatcta 314  Q
    |||||||||||||||||| ||    ||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||    
T  12295496 agaagatgagaagttgaaggg----ttgaggataacatgtggaaaggaatatgtgttatctaaaataagttttttaatcta 12295420  T

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