View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21680_high_2 (Length: 519)

Name: NF21680_high_2
Description: NF21680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21680_high_2
NF21680_high_2
[»] chr2 (2 HSPs)
chr2 (45-285)||(36276314-36276554)
chr2 (348-458)||(36276617-36276727)
[»] chr7 (2 HSPs)
chr7 (348-491)||(9657118-9657260)
chr7 (52-222)||(9657364-9657532)
[»] chr4 (3 HSPs)
chr4 (348-491)||(13528143-13528285)
chr4 (52-222)||(13528389-13528557)
chr4 (139-177)||(16621365-16621403)
[»] chr6 (1 HSPs)
chr6 (386-491)||(13032763-13032868)
[»] chr3 (1 HSPs)
chr3 (386-451)||(51485443-51485508)
[»] chr8 (1 HSPs)
chr8 (111-162)||(5222057-5222108)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 45 - 285
Target Start/End: Original strand, 36276314 - 36276554
Alignment:
Q  45 ctcgcagctagacactaactcttgactttgaagcaaaaacaatcgacccatcataatccagcaaacaaacctcaaaggcattcgacatgtgggacggtgg 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36276314 ctcgcagctagacactaactcttgactttgaagcaaaaacaatcgacccatcataatccagcaaacaaacctcaaaggcattcgacatgtgggacggtgg 36276413  T
Q  145 tgaaaacaaaaatcatgttagaaaaggaaaaagctcaactcgaagaccacacatagtcgaagcacccaaacataaaagtaacccaaaactcaaccaaagc 244  Q
    |||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36276414 tgaaaacagaaatcatgtcagaaaagtaaaaagctcaactcgaagaccacacatagtcgaagcacccaaacataaaagtaacccaaaactcaaccaaaga 36276513  T
Q  245 gtttgcaacggtggatatggacccaaagcagaggcgcctat 285  Q
    | | |||| ||||||||||||||||||||||||||||||||    
T  36276514 gctagcaatggtggatatggacccaaagcagaggcgcctat 36276554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 348 - 458
Target Start/End: Original strand, 36276617 - 36276727
Alignment:
Q  348 gttaatacacccataaccctatctaaacaacacctttacccctcttgatcagcttcagtccaccaagatatccgatgtcagatcccagtccagaatttcc 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||    
T  36276617 gttaatacacccataaccctatctaaacaacacctttacccctcttgatcagcttcagtccaccaagatatccgatgtcatatcccagttcataatttcc 36276716  T
Q  448 accatgatacc 458  Q
    |||||||||||    
T  36276717 accatgatacc 36276727  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 348 - 491
Target Start/End: Complemental strand, 9657260 - 9657118
Alignment:
Q  348 gttaatacacccataaccctatctaaacaacacctttacccctcttgatcagcttcagtccaccaagatatccgatgtcagatcccagtccagaatttcc 447  Q
    ||||| ||| ||||||||||||||||||||||| | |||||| |||||||| || ||||||||||||| ||  || ||| | ||  |||||| ||||||     
T  9657260 gttaaaacatccataaccctatctaaacaacacttgtacccc-cttgatcaactccagtccaccaagagatttgacgtccgctctgagtccataatttct 9657162  T
Q  448 accatgataccatccaaaccataccactacaaccacaacaaacc 491  Q
    ||||||||||| || |||||| |||  ||||||||| |||||||    
T  9657161 accatgataccttctaaaccacacccttacaaccacgacaaacc 9657118  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 222
Target Start/End: Complemental strand, 9657532 - 9657364
Alignment:
Q  52 ctagacactaactcttgactttgaagcaaaaacaatcgacccatcataatccagcaaacaaacctcaaaggcattcgacatgtgggacggtggtgaaaac 151  Q
    ||||| |||||||| |||  | ||||| ||| |||||| |||| |||||||||| ||| || ||| |||||   |||||| ||||||| |||||||||||    
T  9657532 ctagatactaactcatgatctcgaagcgaaatcaatcggcccaccataatccaggaaaaaatcctgaaaggatatcgacaggtgggacagtggtgaaaac 9657433  T
Q  152 aaaaatcatgttagaaaaggaaaaagctcaactcgaagaccacacatagtcgaagcacccaaacataaaag 222  Q
    | ||| ||||| | |||| ||||| |||||  |  || ||||| ||||||||||||| || ||||||||||    
T  9657432 agaaaacatgtca-aaaaagaaaaggctcatttaaaaaaccacccatagtcgaagcagcc-aacataaaag 9657364  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 348 - 491
Target Start/End: Complemental strand, 13528285 - 13528143
Alignment:
Q  348 gttaatacacccataaccctatctaaacaacacctttacccctcttgatcagcttcagtccaccaagatatccgatgtcagatcccagtccagaatttcc 447  Q
    ||||| ||| ||||||||||||||||||||||| | |||||| |||||||| || ||||||||||||| ||  || ||| | ||  |||||| ||||||     
T  13528285 gttaaaacatccataaccctatctaaacaacacttgtacccc-cttgatcaactccagtccaccaagagatttgacgtccgctctgagtccataatttct 13528187  T
Q  448 accatgataccatccaaaccataccactacaaccacaacaaacc 491  Q
    ||||||||||| || |||||| |||  ||||||||| |||||||    
T  13528186 accatgataccttctaaaccacacccttacaaccacgacaaacc 13528143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 222
Target Start/End: Complemental strand, 13528557 - 13528389
Alignment:
Q  52 ctagacactaactcttgactttgaagcaaaaacaatcgacccatcataatccagcaaacaaacctcaaaggcattcgacatgtgggacggtggtgaaaac 151  Q
    ||||| |||||||| |||  | ||||| ||| |||||| |||| |||||||||| ||| || ||| |||||   |||||| ||||||| |||||||||||    
T  13528557 ctagatactaactcatgatctcgaagcgaaatcaatcggcccaccataatccaggaaaaaatcctgaaaggatatcgacaggtgggacagtggtgaaaac 13528458  T
Q  152 aaaaatcatgttagaaaaggaaaaagctcaactcgaagaccacacatagtcgaagcacccaaacataaaag 222  Q
    | ||| ||||| | |||| ||||| |||||  |  || ||||| ||||||||||||| || ||||||||||    
T  13528457 agaaaacatgtca-aaaaagaaaaggctcatttaaaaaaccacccatagtcgaagcagcc-aacataaaag 13528389  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 16621403 - 16621365
Alignment:
Q  139 cggtggtgaaaacaaaaatcatgttagaaaaggaaaaag 177  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  16621403 cggtggtgcaaacaaaaatcatgttagaaaaagaaaaag 16621365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 491
Target Start/End: Original strand, 13032763 - 13032868
Alignment:
Q  386 cccctcttgatcagcttcagtccaccaagatatccgatgtcagatcccagtccagaatttccaccatgataccatccaaaccataccactacaaccacaa 485  Q
    |||||||||||||||| |||||||||| || |||||| || | |||| |||||| |||||| |||| ||||||| |||||||| |||  ||||||||  |    
T  13032763 cccctcttgatcagctccagtccaccatgaaatccgacgttaaatccgagtccaaaatttcgaccacgataccaaccaaaccacacccatacaaccatga 13032862  T
Q  486 caaacc 491  Q
    ||||||    
T  13032863 caaacc 13032868  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 451
Target Start/End: Original strand, 51485443 - 51485508
Alignment:
Q  386 cccctcttgatcagcttcagtccaccaagatatccgatgtcagatcccagtccagaatttccacca 451  Q
    |||||||||||||||| |||||||||| || |||||| |||| |||| |||||| |||||| ||||    
T  51485443 cccctcttgatcagctccagtccaccatgaaatccgacgtcaaatccgagtccaaaatttcaacca 51485508  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 5222057 - 5222108
Alignment:
Q  111 aaacctcaaaggcattcgacatgtgggacggtggtgaaaacaaaaatcatgt 162  Q
    ||||||||||| |||||||||  ||||| |||||||||||| ||||||||||    
T  5222057 aaacctcaaagacattcgacagatgggatggtggtgaaaacgaaaatcatgt 5222108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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