View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21680_high_3 (Length: 433)

Name: NF21680_high_3
Description: NF21680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21680_high_3
NF21680_high_3
[»] chr7 (11 HSPs)
chr7 (30-231)||(48307471-48307672)
chr7 (30-234)||(48296156-48296360)
chr7 (30-97)||(37295056-37295123)
chr7 (314-349)||(7342915-7342950)
chr7 (314-349)||(16281547-16281582)
chr7 (314-349)||(16295751-16295786)
chr7 (314-349)||(17453262-17453297)
chr7 (314-349)||(17463974-17464009)
chr7 (314-349)||(17589205-17589240)
chr7 (314-349)||(48296440-48296475)
chr7 (314-349)||(12594519-12594555)
[»] chr8 (2 HSPs)
chr8 (314-349)||(14336984-14337019)
chr8 (314-349)||(23602156-23602191)
[»] chr6 (1 HSPs)
chr6 (314-349)||(12391953-12391988)
[»] chr4 (2 HSPs)
chr4 (314-349)||(55789856-55789891)
chr4 (314-348)||(40816834-40816868)
[»] chr3 (1 HSPs)
chr3 (314-349)||(13554443-13554478)
[»] chr5 (2 HSPs)
chr5 (314-349)||(346198-346233)
chr5 (314-349)||(360833-360868)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 48307471 - 48307672
Alignment:
Q  30 aacctttgcataaacttgatgaataagaagtgcattgtcgtccacactcgcaacaatcctgctggaatctctatatacgtaactatttcatggctacaca 129  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48307471 aacctttgcatcaacttgatgaataagaagtgcattgttgtccacactcgcaacaatcctgctggaatctctatatacgtaactatttcatggctacaca 48307570  T
Q  130 aaacattaccatttgaacattccctttatcagtttaacaattataattgatgttaaagttacaagttacaacaaagtaaaatagaaggggacatatcctt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48307571 aaacattaccatttgaacattccctttatcagtttaacaattataattgatgttaaagttacaagttacaacaaagtaaaatagaaggggacatatactt 48307670  T
Q  230 aa 231  Q
    ||    
T  48307671 aa 48307672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 30 - 234
Target Start/End: Original strand, 48296156 - 48296360
Alignment:
Q  30 aacctttgcataaacttgatgaataagaagtgcattgtcgtccacactcgcaacaatcctgctggaatctctatatacgtaactatttcatggctacaca 129  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48296156 aacctttgcatcaacttgatgaataagaagtgcattgtcgtccacactcgcaacaatcctgctggaatctctatatacgtaactatttcatggctacaca 48296255  T
Q  130 aaacattaccatttgaacattccctttatcagtttaacaattataattgatgttaaagttacaagttacaacaaagtaaaatagaaggggacatatcctt 229  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  48296256 aaacattaccatttgaacattccctttataattttaacaattataattgatgttaaagttacaagttaaaacaaagtaaaatagaaggggacatatactt 48296355  T
Q  230 aaatt 234  Q
    |||||    
T  48296356 aaatt 48296360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 37295056 - 37295123
Alignment:
Q  30 aacctttgcataaacttgatgaataagaagtgcattgtcgtccacactcgcaacaatcctgctggaat 97  Q
    ||||||||||| ||||||||||||||||||| |||||||| |||||||| || |||||||||||||||    
T  37295056 aacctttgcatcaacttgatgaataagaagtacattgtcgaccacactcccagcaatcctgctggaat 37295123  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 7342915 - 7342950
Alignment:
Q  314 ggagatgatatacctttgtgggagagtagaagaaag 349  Q
    ||||||||||||||||||||||||||||||||||||    
T  7342915 ggagatgatatacctttgtgggagagtagaagaaag 7342950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 16281547 - 16281582
Alignment:
Q  314 ggagatgatatacctttgtgggagagtagaagaaag 349  Q
    ||||||||||||||||||||||||||||||||||||    
T  16281547 ggagatgatatacctttgtgggagagtagaagaaag 16281582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 16295751 - 16295786
Alignment:
Q  314 ggagatgatatacctttgtgggagagtagaagaaag 349  Q
    ||||||||||||||||||||||||||||||||||||    
T  16295751 ggagatgatatacctttgtgggagagtagaagaaag 16295786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 17453262 - 17453297
Alignment:
Q  314 ggagatgatatacctttgtgggagagtagaagaaag 349  Q
    ||||||||| ||||||||||||||||||||||||||    
T  17453262 ggagatgatttacctttgtgggagagtagaagaaag 17453297  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 349
Target Start/End: Complemental strand, 17464009 - 17463974
Alignment:
Q  314 ggagatgatatacctttgtgggagagtagaagaaag 349  Q
    ||||||||| ||||||||||||||||||||||||||    
T  17464009 ggagatgatttacctttgtgggagagtagaagaaag 17463974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 17589205 - 17589240
Alignment:
Q  314 ggagatgatatacctttgtgggagagtagaagaaag 349  Q
    ||||||||| ||||||||||||||||||||||||||    
T  17589205 ggagatgatttacctttgtgggagagtagaagaaag 17589240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 48296440 - 48296475
Alignment:
Q  314 ggagatgatatacctttgtgggagagtagaagaaag 349  Q
    ||||||||||||| ||||||||||||||||||||||    
T  48296440 ggagatgatatacttttgtgggagagtagaagaaag 48296475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 349
Target Start/End: Complemental strand, 12594555 - 12594519
Alignment:
Q  314 ggagatgatataccttt-gtgggagagtagaagaaag 349  Q
    ||||||||||||||||| |||||||||||||||||||    
T  12594555 ggagatgatataccttttgtgggagagtagaagaaag 12594519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 14336984 - 14337019
Alignment:
Q  314 ggagatgatatacctttgtgggagagtagaagaaag 349  Q
    ||||||||||||||||||||||||||||||||||||    
T  14336984 ggagatgatatacctttgtgggagagtagaagaaag 14337019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 23602156 - 23602191
Alignment:
Q  314 ggagatgatatacctttgtgggagagtagaagaaag 349  Q
    ||||||||||||||||||||||||||||||||||||    
T  23602156 ggagatgatatacctttgtgggagagtagaagaaag 23602191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 349
Target Start/End: Complemental strand, 12391988 - 12391953
Alignment:
Q  314 ggagatgatatacctttgtgggagagtagaagaaag 349  Q
    ||||||||||||||||||||||||||||||||||||    
T  12391988 ggagatgatatacctttgtgggagagtagaagaaag 12391953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 349
Target Start/End: Complemental strand, 55789891 - 55789856
Alignment:
Q  314 ggagatgatatacctttgtgggagagtagaagaaag 349  Q
    ||||||||||||||||||||||||||||||||||||    
T  55789891 ggagatgatatacctttgtgggagagtagaagaaag 55789856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 348
Target Start/End: Original strand, 40816834 - 40816868
Alignment:
Q  314 ggagatgatatacctttgtgggagagtagaagaaa 348  Q
    |||||||||||||||||||||||||||||||||||    
T  40816834 ggagatgatatacctttgtgggagagtagaagaaa 40816868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 349
Target Start/End: Complemental strand, 13554478 - 13554443
Alignment:
Q  314 ggagatgatatacctttgtgggagagtagaagaaag 349  Q
    ||||||||||||||||||||||||||||||||||||    
T  13554478 ggagatgatatacctttgtgggagagtagaagaaag 13554443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 346198 - 346233
Alignment:
Q  314 ggagatgatatacctttgtgggagagtagaagaaag 349  Q
    |||||||||||||| |||||||||||||||||||||    
T  346198 ggagatgatatacccttgtgggagagtagaagaaag 346233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 360833 - 360868
Alignment:
Q  314 ggagatgatatacctttgtgggagagtagaagaaag 349  Q
    |||||||||||||| |||||||||||||||||||||    
T  360833 ggagatgatatacccttgtgggagagtagaagaaag 360868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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