View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21680_high_4 (Length: 403)
Name: NF21680_high_4
Description: NF21680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21680_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 29 - 375
Target Start/End: Original strand, 17995894 - 17996233
Alignment:
| Q |
29 |
atcatcaaaatctaagaataccccaaacaaagagccaatcttcttgaacaagggttcatcccaaacatggaggggaataccatgaacatggagccaaacc |
128 |
Q |
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| T |
17995894 |
atcatcaaaatctaagaacaccccaaacaaagagtcaatcttcttgaacaagggttcatcccaaacatggaggggaataccatgaacatggagccaaacc |
17995993 |
T |
|
| Q |
129 |
gccctactatttgccaccaactgaggtgtccaccttctaaccgaagaaaacattgaataacaccaagctagatggctattgtgaactggatcaatatcct |
228 |
Q |
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||| |||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| || |||||||||| |
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| T |
17995994 |
gccatactatctgccaccaactgaggtgtccaccttctaaccgaagaa-------aatatcaccaagctagatggctattgcgaaccgggtcaatatcct |
17996086 |
T |
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| Q |
229 |
tcatacactcaatatgcaggagcatctttctgtctcccatctctgtgactttaacaccttgaatgccttccataaccaaagcttgttgcacctccaaaac |
328 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
17996087 |
tcataccttcaatatgcaaaagcatctttctgtctcccatctctatgactttaacacctcgaatgccttccataaccaaagcttgttgcacctccaaagc |
17996186 |
T |
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| Q |
329 |
atcattatgatggaacagttcccctataaaggcccactgcaaatagt |
375 |
Q |
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||| || ||||||||||||||||| ||||||| |||||||||||||| |
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| T |
17996187 |
atccttctgatggaacagttcccccataaaggtccactgcaaatagt |
17996233 |
T |
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