View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21680_high_5 (Length: 395)
Name: NF21680_high_5
Description: NF21680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21680_high_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 7596669 - 7596274
Alignment:
| Q |
1 |
aaaattaaaagaggaaataggatccttttatctaagcccctcgatgcnnnnnnn-tcttatgttgaagatgtccattcacaaaaatgaacatttgatgtg |
99 |
Q |
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| T |
7596669 |
aaaattaaaagaggaaataggatccttttatctaagcccctcgatgcaaaaaaaatcttatgtagaagatgtccattcacaaaaataaacatttgatatg |
7596570 |
T |
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| Q |
100 |
ggagttgatcatacttcttctttcttattgtccaagtctataattcattcacaaccaacacctaatccaaattaaatttgtcctgtatattggaaattta |
199 |
Q |
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| T |
7596569 |
ggaggcgatcatacttcttctttcttagtgtccaagtctataattcattcacaaccaacacctaatccaaattatatttgtactgtatattggaaattta |
7596470 |
T |
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| Q |
200 |
acttattttagcgtaatacaagtgtcactaaattgtataatgatagaaattcaatgatatataaacaagtaattgagttcaagtggttaatgagtttaac |
299 |
Q |
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| T |
7596469 |
acctatattagcgtaatacaagtgtcactaaattgtataatgatagaaattcaatgatatataaacaagtaattgagttcaagtggttaatgagttcaac |
7596370 |
T |
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| Q |
300 |
gaatcatttgaaaaaaccgaattcgatttttaaatgaagcaaattttgactatgttttacttactttccgatagaactccaagaacggtaggtaaa |
395 |
Q |
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| T |
7596369 |
gaataatttaaaaaaaccaagttcgatttttagatgaagcaaattttgactatgctttacttacttcccgatagaactccaagaacggtaggtaaa |
7596274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 296
Target Start/End: Original strand, 26172731 - 26172762
Alignment:
| Q |
265 |
caagtaattgagttcaagtggttaatgagttt |
296 |
Q |
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| T |
26172731 |
caagtaattgagttcaagtggttaatgagttt |
26172762 |
T |
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