View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21680_high_6 (Length: 381)
Name: NF21680_high_6
Description: NF21680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21680_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 356
Target Start/End: Complemental strand, 35293631 - 35293293
Alignment:
| Q |
20 |
catcatcagtaacttgtaattaactaaatgtaatgtaaatgcaactgaaaatatacactcaaataataaaatggacaatcaataactattttgtaatttc |
119 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
35293631 |
catcataagtaacttgtaattaactaaatgtaatgtaaatgcaactgaaaatatacactcaaataataaaatgtacaattaataactattttataatttc |
35293532 |
T |
|
| Q |
120 |
gatacagtaagaggctattacggctatttgttaaacattcatggatgaaaatgactataacccctttgttttatttcaaagaaaaacatgtaacgtttgt |
219 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| || ||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
35293531 |
aatacagtaagaggctattacggctatctattaaacattcatggatgaaaattactataatccttttattttatttcaaagaaaaatatgtgacgtttgt |
35293432 |
T |
|
| Q |
220 |
ttaaaactattataaattatagtcatttatgtgtggatgtact--ttttagtaattcaagtgcttcattgacatatgaacaacacattttgacaacatcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35293431 |
ttaaaactattataaattatagtcatttatgtatggatgtactttttttagtaattcaagtgcttcattgacatatgaacaacacattttgacaacatcc |
35293332 |
T |
|
| Q |
318 |
ataatccatttgattttggccaagacaaagtcaccattt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35293331 |
ataatccatttgattttggccaagacaaagccaccattt |
35293293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 28584946 - 28585008
Alignment:
| Q |
20 |
catcatcagtaacttgtaattaactaaatgtaatgtaaatgcaactgaaaatatacactcaaat |
83 |
Q |
| |
|
|||||| | |||||||||| ||||||||||||||||||||||| || |||| ||||||||||| |
|
|
| T |
28584946 |
catcataactaacttgtaacaaactaaatgtaatgtaaatgcaattg-aaatttacactcaaat |
28585008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 8407219 - 8407300
Alignment:
| Q |
96 |
aatcaataactattttgtaatttcgatacagtaagaggctattacggctatttgttaaacattcatggatgaaaatgactat |
177 |
Q |
| |
|
|||||||||||||||| ||||| |||||| | ||| ||| || || |||| |||| ||||| |||||||||||||||||| |
|
|
| T |
8407219 |
aatcaataactattttaaaattttgatacattcagaaactaatatggttattcgttacacatttatggatgaaaatgactat |
8407300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 2519027 - 2519076
Alignment:
| Q |
20 |
catcatcagtaacttgtaattaactaaatgtaatgtaaatgcaactgaaa |
69 |
Q |
| |
|
|||||| | |||||| ||| |||||||||||||| ||||||||||||||| |
|
|
| T |
2519027 |
catcataactaacttataactaactaaatgtaatctaaatgcaactgaaa |
2519076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University