View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21680_low_1 (Length: 317)
Name: NF21680_low_1
Description: NF21680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21680_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 52518195 - 52518481
Alignment:
| Q |
13 |
aatattgaaattataattacatcttactttttcaaacccaccacgagaagtcacttcaacaaagaggcgatgtaaatccaattcccttcccccaataaca |
112 |
Q |
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| T |
52518195 |
aatattgaaattataattacatcttactttttcaaacccaccacgagaagtcacttcaacaaagaggcgatgtaaatccaattcccttcccccaataaca |
52518294 |
T |
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| Q |
113 |
ggaatcctgcaataaaattccaaatgttttttgaagttgcaaagttatacaagtaaatggcattaatagtgtatagtatctccaaaaatgcaaaactaga |
212 |
Q |
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| T |
52518295 |
ggaatcctgcaataaaattccaaatgttttttgaagttgcaaagttatacaagtaaatggcattaatagtgtatagtatctccaaaaatgcaaaactaga |
52518394 |
T |
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| Q |
213 |
tgctgagactgcactgctaagccataatttgtttaccacagtgcctggtcccatccaactagaaaaccatttatatccagaaaacat |
299 |
Q |
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| T |
52518395 |
tgctgagactgcactgctaagccataatttgtttaccacagtgcctggtcccatccaactagaaaaccatttatatccagaaaacat |
52518481 |
T |
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