View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21681_high_11 (Length: 323)
Name: NF21681_high_11
Description: NF21681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21681_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 110 - 314
Target Start/End: Complemental strand, 27261384 - 27261180
Alignment:
| Q |
110 |
ttatttcattaaatgccatccgactgagttcattataaacaatcatcatatggatacatctataatcttcgggatgtgcattatctcgataatgtggtgc |
209 |
Q |
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| T |
27261384 |
ttatttcattaaatgccacccgactaagttcattataaacaatcatcatatggatacatctataatcttcaggatgtacattatctcgataatgtggtgc |
27261285 |
T |
|
| Q |
210 |
ccatagtacaaaagtgagaggaattggacaatcatttttcaaatagaaaatcttaaaatgtttttcattcacatgtattagatacatgattcggtttctc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261284 |
ccatagtacaaaagtgagaggaattggacaatcattttttaaatagaaaatcttaaaatgtttttcattcacatgtattagatacatgattcggtttctc |
27261185 |
T |
|
| Q |
310 |
tgtga |
314 |
Q |
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||||| |
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| T |
27261184 |
tgtga |
27261180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 27265846 - 27265729
Alignment:
| Q |
1 |
agtccaaggctatcaacttcaatcttaactccatcttcaaccttcttatcatccgtaacatagtcttgagaatcaaaggtttccacaatgaccacgtcat |
100 |
Q |
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| T |
27265846 |
agtccaaggctatcaacttcaatcttaactccatcttcaaccttcttatcatcactaacatagtcttgagaatcaaaggtttccacaatgaccacgtcat |
27265747 |
T |
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| Q |
101 |
catctcctattatttcat |
118 |
Q |
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|||||||||||||||||| |
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| T |
27265746 |
catctcctattatttcat |
27265729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 21941471 - 21941401
Alignment:
| Q |
221 |
aagtgagaggaattggacaatcatttttcaaatagaaaatcttaaaatgtttttcattcacatgtattaga |
291 |
Q |
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|||| ||||||||||||||| |||| |||||||| | ||| |||||| ||||||||||||||| ||||| |
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| T |
21941471 |
aagtcagaggaattggacaaccattcttcaaatataccatcataaaataattttcattcacatgtgttaga |
21941401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 12124143 - 12124095
Alignment:
| Q |
3 |
tccaaggctatcaacttcaatcttaactccatcttcaaccttcttatca |
51 |
Q |
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|||||| |||||||||| || ||| |||||||||||||| ||||||||| |
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| T |
12124143 |
tccaagactatcaacttaaacctttactccatcttcaacattcttatca |
12124095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 35479056 - 35479106
Alignment:
| Q |
1 |
agtccaaggctatcaacttcaatcttaactccatcttcaaccttcttatca |
51 |
Q |
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| T |
35479056 |
agtccaaggctatcaacttgaatcttgactccatcttcagccttcttatca |
35479106 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 27546994 - 27546908
Alignment:
| Q |
222 |
agtgagaggaattggacaatcatttttcaaatagaaaatcttaaaatgtttttcattcacatgtattagatacatgattcggtttct |
308 |
Q |
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|||| |||||||||||||| |||| |||||||| | ||| ||||||| || ||||||||||| ||||| |||| ||||| ||||| |
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| T |
27546994 |
agtgggaggaattggacaaccattcttcaaatacaccatcataaaatggttgtcattcacatgagttagacacatcattcgatttct |
27546908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 13750751 - 13750714
Alignment:
| Q |
14 |
caacttcaatcttaactccatcttcaaccttcttatca |
51 |
Q |
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||||||||||||| | |||||||||||||||||||||| |
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| T |
13750751 |
caacttcaatcttgattccatcttcaaccttcttatca |
13750714 |
T |
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