View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21682_high_12 (Length: 310)
Name: NF21682_high_12
Description: NF21682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21682_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 30500267 - 30499993
Alignment:
| Q |
1 |
aacaaaggttcctttattttctttgccttaatctttatctacgagttgatggagtcatacaatannnnnnnngtgattttatgaaaatttgctctaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30500267 |
aacaaaggttcctttattttctttgccttaatctttatctacgagttgatggagtcatacaatattttttttgtgattttatgaaaatttgctctaatca |
30500168 |
T |
|
| Q |
101 |
tttttagctgctggaaatcaatcttaagacctttccaaatgttgctgattctatattggcaaaaggcgtgtttagtcattatgatcgtccacgtattgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30500167 |
tttttagctgctggaaatcaatcttaagacctttccaaatgttgctgattctatattggcaaaaggcgtgtttagtcattatgatcgtccacgtattgct |
30500068 |
T |
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| Q |
201 |
aaactttgtgaaaaggccggccttttcatccgggctcttcaggttctcggcttttcataccaaagactgactgta |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
30500067 |
aaactttgtgaaaaggccggccttttcatccgggctcttcaggttcttggcttttcataccaatgactgactgta |
30499993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 30540610 - 30540336
Alignment:
| Q |
1 |
aacaaaggttcctttattttctttgccttaatctttatctacgagttgatggagtcatacaatannnnnnnngtgattttatgaaaatttgctctaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30540610 |
aacaaaggttcctttattttctttgccttaatctttatctacgagttgatggagtcatacaatattttttttgtgattttatgaaaatttgctctaatca |
30540511 |
T |
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| Q |
101 |
tttttagctgctggaaatcaatcttaagacctttccaaatgttgctgattctatattggcaaaaggcgtgtttagtcattatgatcgtccacgtattgct |
200 |
Q |
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| T |
30540510 |
tttttagctgctggaaatcaatcttaagacctttccaaatgttgctgattctatattggcaaaaggcgtgtttagtcattatgatcgtccacgtattgct |
30540411 |
T |
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| Q |
201 |
aaactttgtgaaaaggccggccttttcatccgggctcttcaggttctcggcttttcataccaaagactgactgta |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
30540410 |
aaactttgtgaaaaggccggccttttcatccgggctcttcaggttcttggcttttcataccaatgactgactgta |
30540336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 100 - 247
Target Start/End: Original strand, 26028775 - 26028922
Alignment:
| Q |
100 |
atttttagctgctggaaatcaatcttaagacctttccaaatgttgctgattctatattggcaaaaggcgtgtttagtcattatgatcgtccacgtattgc |
199 |
Q |
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| T |
26028775 |
atttttaggttctggaaattaatctagtgacgtttccaaatgttgctgatgctatattggccaatggcatgttcactcattatgatcgcccacgcattgc |
26028874 |
T |
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| Q |
200 |
taaactttgtgaaaaggccggccttttcatccgggctcttcaggttct |
247 |
Q |
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| |||| ||||||||||||||||||||||| || |||||||||||||| |
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| T |
26028875 |
tcaactctgtgaaaaggccggccttttcatacgtgctcttcaggttct |
26028922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 31846165 - 31846241
Alignment:
| Q |
138 |
aatgttgctgattctatattggcaaaaggcgtgtttagtcattatgatcgtccacgtattgctaaactttgtgaaaa |
214 |
Q |
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|||||||||||| | || ||||| || ||| ||||||| |||||||| ||||| || ||||| ||||||||||||| |
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| T |
31846165 |
aatgttgctgatgcaattttggctaacggcatgtttagccattatgaccgtcctcggattgcccaactttgtgaaaa |
31846241 |
T |
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