View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21682_high_13 (Length: 309)
Name: NF21682_high_13
Description: NF21682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21682_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 10162833 - 10162568
Alignment:
| Q |
1 |
gatcatcattaccacaacaactatctagtaatatgagcgatgaaagaatccatttccatacgagagactccaccttcatccattgacgtaccaacaacat |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10162833 |
gatcatcatttacacaacaactatctagtaatatgagcgataaaagaatccatttcaatacgagagactccaccttcatccattgacgtaccaacaacat |
10162734 |
T |
|
| Q |
101 |
ttttaagttttattgctctctctcgcatctcatcaccttccgttgtctccatcaaccttctaacaacattctcaatatttgaagcagtaaccaattcatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10162733 |
ttttaagttttattgctctctctcgcatctcatcaccttccgttgtctccatcaaccttctaacaacattctcaatatttgaagcagtaaccaatttatg |
10162634 |
T |
|
| Q |
201 |
tcttttagcccagtccttcacaaccaaaccaatctttaacacttgtgttatcaaaacacaggttct |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10162633 |
tcttttagcccagtccttcacaaccaaaccaatctttaacacttgtgttatcaaaacacagtttct |
10162568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 10163672 - 10163561
Alignment:
| Q |
13 |
cacaacaactatctagtaatatgagcgatgaaagaatccatttccatacgagagactccaccttcatccattgacgtaccaacaacatttttaagtttta |
112 |
Q |
| |
|
|||| ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10163672 |
cacagcaaatatctagtaatatgagcaatgaaagaatccatttccatacgagaaactcctccttcatccattgacgtactaacaacatttttaagtttta |
10163573 |
T |
|
| Q |
113 |
ttgctctctctc |
124 |
Q |
| |
|
| ||||||||| |
|
|
| T |
10163572 |
tctctctctctc |
10163561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 10163559 - 10163482
Alignment:
| Q |
164 |
caacattctcaatatttgaagcagtaaccaattcatgtcttttagcccagtccttcacaaccaaaccaatctttaaca |
241 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |
|
|
| T |
10163559 |
caacattctcaatatctgaagcagtaaccaattcatgtctattagcccaatcctcgacaaccaaaccaatctttaaca |
10163482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 1609814 - 1609566
Alignment:
| Q |
18 |
caactatctagtaatatgagcgatgaaagaatccatttccatacgagagactccaccttcatccattgacgtaccaacaacatttttaagttttattgct |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| |||||| | ||||||||||||| |||||| |
|
|
| T |
1609814 |
caactatctagtgatatgagcgatgaaagaatccatttccatacgagaaactccgccttcatccatcgacataccaatagcatttttaagtttcattgct |
1609715 |
T |
|
| Q |
118 |
ctctctcgcatctcatcaccttccgttgtctccatcaaccttctaacaacattctcaatatttgaagcagtaaccaattcatgtcttttagcccagtcct |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
1609714 |
ctctctcgcatctcatcaccttccattgtatccatcaacgttctaacaacattctcaatatctgaagcagtaaccaactcatgtcttttagcccaatcca |
1609615 |
T |
|
| Q |
218 |
tcacaaccaaaccaatctttaacacttgtgttatcaaaacacaggttct |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
1609614 |
tcacaaccaaaccaatctttaacacttgtgttatgaaaacacagtttct |
1609566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 37722269 - 37722203
Alignment:
| Q |
21 |
ctatctagtaatatgagcgatgaaagaatccatttccatacgagagactccaccttcatccattgac |
87 |
Q |
| |
|
||||||||| | ||| || ||||||||||||| ||||||||| || || |||||||||||||||||| |
|
|
| T |
37722269 |
ctatctagtcacatgggcaatgaaagaatccagttccatacgtgaaacaccaccttcatccattgac |
37722203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University