View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21682_high_15 (Length: 302)

Name: NF21682_high_15
Description: NF21682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21682_high_15
NF21682_high_15
[»] chr7 (3 HSPs)
chr7 (95-291)||(11504425-11504622)
chr7 (95-298)||(18939788-18939987)
chr7 (195-248)||(24760519-24760572)
[»] chr6 (3 HSPs)
chr6 (95-265)||(20909730-20909899)
chr6 (95-265)||(20924178-20924347)
chr6 (124-298)||(27445062-27445236)
[»] chr1 (1 HSPs)
chr1 (95-265)||(41326624-41326794)
[»] scaffold0003 (2 HSPs)
scaffold0003 (124-298)||(42122-42296)
scaffold0003 (124-298)||(35452-35625)
[»] chr8 (2 HSPs)
chr8 (95-265)||(42312844-42313014)
chr8 (118-295)||(43227134-43227309)
[»] chr3 (3 HSPs)
chr3 (195-295)||(52310804-52310904)
chr3 (195-295)||(53689993-53690093)
chr3 (195-248)||(52127954-52128007)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 95 - 291
Target Start/End: Complemental strand, 11504622 - 11504425
Alignment:
Q  95 tcaagtaagacgtattcgattacagagagatcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnng 194  Q
    |||||| |||||| |||||||||| ||| |||||| | |||||||||||||| |||||||| ||||||||||||||||||||||||||||||            
T  11504622 tcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtagtggttttaaattttttt 11504523  T
Q  195 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaatt-caatgttctcgtagcctctttctatagattttcaagctaactttgaaacac 291  Q
    ||||||||||| ||||||||| ||  ||||||||||||||||||||  | || |||| ||||||||||||||||||||||||||| ||||||||||||    
T  11504522 aacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctatagattttcaagctcactttgaaacac 11504425  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 95 - 298
Target Start/End: Original strand, 18939788 - 18939987
Alignment:
Q  95 tcaagtaagacgtattcgattacagagagatcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnng 194  Q
    |||| |||||||| |||||| | | ||| ||||||||  ||||||||||||| |||||||| ||||| ||||||||||| ||||| ||||              
T  18939788 tcaattaagacgtcttcgat-ataaagatatcttccttccaaacaacacttgattctaaaactcttgattcatcatatgttagtgttttt----tttttt 18939882  T
Q  195 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaat-gttctcgtagcctctttctatagattttcaagctaactttgaaacacca 293  Q
    |||||||||||  || ||||||||  ||||||||||||||||||||   | | |||| ||||||||||||||||||||||||||| |||||||||||||     
T  18939883 aacatagaacacaaacctctaagaaaattcaaaaagcaagtgaattgttttggtctcatagcctctttctatagattttcaagctcactttgaaacaccg 18939982  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 24760572 - 24760519
Alignment:
Q  195 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaatgttc 248  Q
    ||||||||||| ||||| |||| | || |||||| |||||||||||||||||||    
T  24760572 aacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttc 24760519  T

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Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 95 - 265
Target Start/End: Original strand, 20909730 - 20909899
Alignment:
Q  95 tcaagtaagacgtattcgattacagagagatcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnng 194  Q
    ||||||||||||| ||| ||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||| ||||| |||||            
T  20909730 tcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatggcagtgg-tttaattttttct 20909828  T
Q  195 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaatgttctcgtagcctctttctat 265  Q
    ||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20909829 aacttagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcgtagcctctttctat 20909899  T

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Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 95 - 265
Target Start/End: Original strand, 20924178 - 20924347
Alignment:
Q  95 tcaagtaagacgtattcgattacagagagatcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnng 194  Q
    ||||||||||||| ||| ||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||| ||||| |||||            
T  20924178 tcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatggcagtgg-tttaattttttct 20924276  T
Q  195 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaatgttctcgtagcctctttctat 265  Q
    ||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20924277 aacttagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcgtagcctctttctat 20924347  T

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Target: chr6; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 124 - 298
Target Start/End: Complemental strand, 27445236 - 27445062
Alignment:
Q  124 atcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnngaacatagaacaacaaactctaagatgatt 223  Q
    |||||||| |||| ||||| ||| |||||||| | |||||||||| |||||||||||||||||        ||||||||||| |||||||||||| ||||    
T  27445236 atcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaattttttttaacatagaacaccaaactctaagaagatt 27445137  T
Q  224 caaaaagcaagtgaattcaatgttctcgtagcctctttctatagattttcaagctaactttgaaacaccaaactc 298  Q
    ||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||| |||||| ||||| ||||||    
T  27445136 caaaaagcaagtgaactcaatgttctcatagcatctttgtatagattttcaagctcactttgtaacactaaactc 27445062  T

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Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 95 - 265
Target Start/End: Original strand, 41326624 - 41326794
Alignment:
Q  95 tcaagtaagacgtattcgattacagagagatcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnng 194  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||| ||||| |||||||| |||||||||||||||||| |||||||| |             
T  41326624 tcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaaaacttgattctaaaactcttgcttcatcatatggcagtggtttaatttttttct 41326723  T
Q  195 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaatgttctcgtagcctctttctat 265  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  41326724 aacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttcttatagcctctttctat 41326794  T

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Target: scaffold0003 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 124 - 298
Target Start/End: Original strand, 42122 - 42296
Alignment:
Q  124 atcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnngaacatagaacaacaaactctaagatgatt 223  Q
    |||||||| |||| ||||| ||| |||||||| | |||||||||| |||||||||||||||||        ||||||||||| |||||||||||| ||||    
T  42122 atcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaattttttttaacatagaacaccaaactctaagaagatt 42221  T
Q  224 caaaaagcaagtgaattcaatgttctcgtagcctctttctatagattttcaagctaactttgaaacaccaaactc 298  Q
    ||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||| |||||| ||||| ||||||    
T  42222 caaaaagcaagtgaactcaatgttctcatagcatctttgtatagattttcaagctcactttgtaacactaaactc 42296  T

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Target: scaffold0003; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 124 - 298
Target Start/End: Original strand, 35452 - 35625
Alignment:
Q  124 atcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnngaacatagaacaacaaactctaagatgatt 223  Q
    |||||||| |||| ||||| ||| |||||||| | |||||||||| |||||||||||||||||        ||||||||||| |||||||  ||| ||||    
T  35452 atcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaattttttt-aacatagaacaccaaactcatagaagatt 35550  T
Q  224 caaaaagcaagtgaattcaatgttctcgtagcctctttctatagattttcaagctaactttgaaacaccaaactc 298  Q
    ||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||| |||||| ||||| ||||||    
T  35551 caaaaagcaagtgaactcaatgttctcatagcatctttgtatagattttcaagctcactttgtaacactaaactc 35625  T

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Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 95 - 265
Target Start/End: Original strand, 42312844 - 42313014
Alignment:
Q  95 tcaagtaagacgtattcgattacagagagatcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnng 194  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||| | |||||||||||| ||||| |||||||| |             
T  42312844 tcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaacacttgattctaatactcttgcttcatcgtatggcagtggtttaatttttttct 42312943  T
Q  195 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaatgttctcgtagcctctttctat 265  Q
    ||||||||||| |||||| ||||| ||| ||||||||||||||||||||||| ||||||||||||||||||    
T  42312944 aacatagaacaccaaactataagaagatacaaaaagcaagtgaattcaatgtactcgtagcctctttctat 42313014  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 295
Target Start/End: Complemental strand, 43227309 - 43227134
Alignment:
Q  118 agagagatcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnngaacatagaacaacaaactctaag 217  Q
    ||||| |||||||| ||||| |||||||| |||||||| |||||||||||| ||||||||| |||||||        ||||||||||| ||||||| | |    
T  43227309 agagatatcttcctgtcaaagaacacttgattctaaaactcttgcttcatcctatggtagtagttttaattttttt-aacatagaacaccaaactcaatg 43227211  T
Q  218 atgattcaaaaagcaagtgaattcaatgttctcgtagcctctttctatagattttcaagctaactttgaaacaccaaa 295  Q
    | |||||||||| |||||||||||||||||||| |||| |||||||||| ||| ||||||| |||||| |||||||||    
T  43227210 a-gattcaaaaatcaagtgaattcaatgttctcatagcatctttctatatattctcaagctcactttgtaacaccaaa 43227134  T

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Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 52310804 - 52310904
Alignment:
Q  195 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaatgttctcgtagcctctttctatagattttcaagctaactttgaaacaccaa 294  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  52310804 aacatagaacaccaaactctaagaagattcaaaaagaaagtgaatttaatgttctcatagcctctttctatagattttcaagctcactttgaaacaccaa 52310903  T
Q  295 a 295  Q
    |    
T  52310904 a 52310904  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 195 - 295
Target Start/End: Complemental strand, 53690093 - 53689993
Alignment:
Q  195 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaatgttctcgtagcctctttctatagattttcaagctaactttgaaacaccaa 294  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||    
T  53690093 aacatagaacaccaaactctaagaagattcaaaaagaaagtgaattcaatgttctcatagcatctttctatagattttcaagctcactttgaaacaccaa 53689994  T
Q  295 a 295  Q
    |    
T  53689993 a 53689993  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 52128007 - 52127954
Alignment:
Q  195 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaatgttc 248  Q
    ||||||||||| ||||| |||| | || |||||| |||||||||||||||||||    
T  52128007 aacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttc 52127954  T

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