View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21682_high_6 (Length: 336)

Name: NF21682_high_6
Description: NF21682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21682_high_6
NF21682_high_6
[»] chr5 (3 HSPs)
chr5 (198-335)||(7927164-7927301)
chr5 (78-194)||(30964673-30964797)
chr5 (83-129)||(35836303-35836349)
[»] chr4 (1 HSPs)
chr4 (78-192)||(26144947-26145069)
[»] chr1 (2 HSPs)
chr1 (83-140)||(29633680-29633737)
chr1 (79-185)||(51946197-51946312)
[»] chr8 (2 HSPs)
chr8 (85-192)||(41076478-41076595)
chr8 (85-192)||(42009169-42009285)
[»] chr3 (2 HSPs)
chr3 (79-130)||(6102022-6102073)
chr3 (143-192)||(6100982-6101031)
[»] chr6 (1 HSPs)
chr6 (79-120)||(31047199-31047240)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 198 - 335
Target Start/End: Complemental strand, 7927301 - 7927164
Alignment:
Q  198 ttatttactagggtggttgggtaataacagcccaggaaggtgggaaaattatcccgctcattggcgtagaaatcaaagtctcactaatttgatttcactt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7927301 ttatttactagggtggttgggtaataacagcccaggaaggtgggaaaattatcccgctcattggcgtagaaatcaaagtctcactaatttgatttcactt 7927202  T
Q  298 tgtgatgaatctcaaactcacactctccttcttcccat 335  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7927201 tgtgatgaatctcaaactcacactctccttcttcccat 7927164  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 30964673 - 30964797
Alignment:
Q  78 tcaaggtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaacta----ccat----gggtgtatcagagtgtgttgccagcta 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    ||||     ||||||  ||||||||||||||||||    
T  30964673 tcaaggtttatatgagttttgactaaactacccttcattaaaagatgaaataccaaaactatcctccatatggaggtgtacaagagtgtgttgccagcta 30964772  T
Q  170 agtgtgttcacctatcaggactcat 194  Q
    |||||||||||||||||||||||||    
T  30964773 agtgtgttcacctatcaggactcat 30964797  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 35836303 - 35836349
Alignment:
Q  83 gtttatatgagttttgactaaactacccttcattaaaagataaaata 129  Q
    |||||||||| || |||| |||||||||||||||||||||| |||||    
T  35836303 gtttatatgaattatgacaaaactacccttcattaaaagatgaaata 35836349  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 26145069 - 26144947
Alignment:
Q  78 tcaaggtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaacta----ccat----gggtgtatcagagtgtgttgccagcta 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    ||||     ||||||  ||||||||||||||||||    
T  26145069 tcaaggtttatatgagttttgactaaactacccttcattaaaagatgaaataccaaaactatcctccatatggaggtgtacaagagtgtgttgccagcta 26144970  T
Q  170 agtgtgttcacctatcaggactc 192  Q
    |||||||||||| ||||||||||    
T  26144969 agtgtgttcacccatcaggactc 26144947  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 29633680 - 29633737
Alignment:
Q  83 gtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactacc 140  Q
    ||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||    
T  29633680 gtttatatgggttttgacaaaactacccttcattaaaagatgaaataccaaaactacc 29633737  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 185
Target Start/End: Original strand, 51946197 - 51946312
Alignment:
Q  79 caaggtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactaccat---------gggtgtatcagagtgtgttgccagcta 169  Q
    ||||||||||||| |||||||| |||||||||||||||||||||  |||||| ||||||| |||         |||||||| || |||||||||  ||||    
T  51946197 caaggtttatatgggttttgacaaaactacccttcattaaaagaagaaatactaaaactatcatgccacatgggggtgtataagggtgtgttgcatgcta 51946296  T
Q  170 agtgtgttcacctatc 185  Q
    ||||||||||||||||    
T  51946297 agtgtgttcacctatc 51946312  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 41076478 - 41076595
Alignment:
Q  85 ttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactaccat----------gggtgtatcagagtgtgttgccagctaagtgt 174  Q
    ||||||| |||||||| |||||||||||||||||||| | |||||||||||||||| |          |||||||  |||||||||||||| |||||  |    
T  41076478 ttatatgggttttgacaaaactacccttcattaaaaggtgaaataccaaaactaccctgccacatggggggtgtacaagagtgtgttgccacctaagcat 41076577  T
Q  175 gttcacctatcaggactc 192  Q
    ||||||||||||||||||    
T  41076578 gttcacctatcaggactc 41076595  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 42009169 - 42009285
Alignment:
Q  85 ttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactac-------catggg--tgtatcagagtgtgttgccagctaagtgtg 175  Q
    ||||||| |||||||| |||||||||||||||||||| | ||||||| |||||||       ||||||  ||||  |||||||||||||| |||||  ||    
T  42009169 ttatatgggttttgacaaaactacccttcattaaaaggtgaaataccgaaactaccctgccacatggggatgtacaagagtgtgttgccacctaagcatg 42009268  T
Q  176 ttcacctatcaggactc 192  Q
    |||||||||||||||||    
T  42009269 ttcacctatcaggactc 42009285  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 6102073 - 6102022
Alignment:
Q  79 caaggtttatatgagttttgactaaactacccttcattaaaagataaaatac 130  Q
    ||||||||||||| |||||||| ||||||| |||||||||||||| ||||||    
T  6102073 caaggtttatatgggttttgacaaaactactcttcattaaaagatgaaatac 6102022  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 6101031 - 6100982
Alignment:
Q  143 gggtgtatcagagtgtgttgccagctaagtgtgttcacctatcaggactc 192  Q
    |||||||| || | |||||||||||||| |||||||||||||||| ||||    
T  6101031 gggtgtataagggggtgttgccagctaaatgtgttcacctatcagcactc 6100982  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 31047199 - 31047240
Alignment:
Q  79 caaggtttatatgagttttgactaaactacccttcattaaaa 120  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  31047199 caaggtttatatgggttttgacaaaactacccttcattaaaa 31047240  T

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