View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21682_high_7 (Length: 332)
Name: NF21682_high_7
Description: NF21682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21682_high_7 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 41 - 332
Target Start/End: Original strand, 30047533 - 30047824
Alignment:
| Q |
41 |
cagtgtatctcttgaataggctgccaacaagggctgttcaagggaaaacaccaattgaggcatggataggtgtgaagccttcagccaaacatttgaaggt |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30047533 |
cagtgtatctcttgaataggctgccaacaagggctgttcaagggaaaacaccaattgaggcatggataggtgtgaagccttcagccaaacatttgaaggt |
30047632 |
T |
|
| Q |
141 |
ctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaaaggggannnnnnngggttatgcagcaagctcc |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
30047633 |
ctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaatggggatttttttgggttatgcagcaagctcc |
30047732 |
T |
|
| Q |
241 |
aaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattgggattgggaaaa |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30047733 |
aaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattgggattgggaaaa |
30047824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 41 - 332
Target Start/End: Original strand, 7159890 - 7160181
Alignment:
| Q |
41 |
cagtgtatctcttgaataggctgccaacaagggctgttcaagggaaaacaccaattgaggcatggataggtgtgaagccttcagccaaacatttgaaggt |
140 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7159890 |
cagtgtatctcttgaataggctaccaacaagagctgttcaagagaaaacaccaattgaggcatggataggtgtgaagccttcagccaaacatttgaagat |
7159989 |
T |
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| Q |
141 |
ctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaaaggggannnnnnngggttatgcagcaagctcc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| |
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| T |
7159990 |
ctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgacaaagctgaaatggggatttttttgggttatgcagcaagctcc |
7160089 |
T |
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| Q |
241 |
aaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattgggattgggaaaa |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7160090 |
aaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcaacagagacattgatgttgatgaaaatgcatattgggattggaaaaa |
7160181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 41 - 332
Target Start/End: Complemental strand, 198482 - 198191
Alignment:
| Q |
41 |
cagtgtatctcttgaataggctgccaacaagggctgttcaagggaaaacaccaattgaggcatggataggtgtgaagccttcagccaaacatttgaaggt |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
198482 |
cagtgtatctcttgaataggctgccaacaagggctgttcaagggaaaacaccaattgaggcatggataggtgtgaagccttcagccaaacatttgaaggt |
198383 |
T |
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| Q |
141 |
ctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaaaggggannnnnnngggttatgcagcaagctcc |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
198382 |
ctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaatggggatttttttgggttatgcagcaagctcc |
198283 |
T |
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| Q |
241 |
aaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattgggattgggaaaa |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
198282 |
aaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattgggattgggaaaa |
198191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 41 - 332
Target Start/End: Original strand, 3943787 - 3944078
Alignment:
| Q |
41 |
cagtgtatctcttgaataggctgccaacaagggctgttcaagggaaaacaccaattgaggcatggataggtgtgaagccttcagccaaacatttgaaggt |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3943787 |
cagtgtatctcttgaataggctgccaacaagggctgttcaagggaaaacaccaattgaggcatggataggtgtgaagccttcagccaaacatttgaaggt |
3943886 |
T |
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| Q |
141 |
ctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaaaggggannnnnnngggttatgcagcaagctcc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
3943887 |
ctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaatggggatttttttgggttatgcagcaagctcc |
3943986 |
T |
|
| Q |
241 |
aaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattgggattgggaaaa |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3943987 |
aaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattgggattgggaaaa |
3944078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 41 - 332
Target Start/End: Complemental strand, 39951643 - 39951352
Alignment:
| Q |
41 |
cagtgtatctcttgaataggctgccaacaagggctgttcaagggaaaacaccaattgaggcatggataggtgtgaagccttcagccaaacatttgaaggt |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951643 |
cagtgtatctcttgaataggctgccaacaagggctgttcaagggaaaacaccaattgaggcatggataggtgtgaagccttcagccaaacatttgaaggt |
39951544 |
T |
|
| Q |
141 |
ctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaaaggggannnnnnngggttatgcagcaagctcc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| |
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| T |
39951543 |
ctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgacaaagctgaaatggggatttttttgggttatgcagcaagctcc |
39951444 |
T |
|
| Q |
241 |
aaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattgggattgggaaaa |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951443 |
aaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattgggattgggaaaa |
39951352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 41 - 332
Target Start/End: Complemental strand, 26220375 - 26220086
Alignment:
| Q |
41 |
cagtgtatctcttgaataggctgccaacaagggctgttcaagggaaaacaccaattgaggcatggataggtgtgaagccttcagccaaacatttgaaggt |
140 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
26220375 |
cagtgcatctcttgaataagctgccaacaagggttgt-caagagaaaacagcaattgaggcatggataggtgtgaagccttcaaccaaacatttgaagat |
26220277 |
T |
|
| Q |
141 |
ctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaaaggggannnnnnngggttatgcagcaagctcc |
240 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| || || ||| ||||||||||||||| |
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| T |
26220276 |
atttggattaatatgttatgttcatgttgtagcagcaaaaagatccaaaatggatgacaatgctgaaatggtgattcttttgggctatgcagcaagctcc |
26220177 |
T |
|
| Q |
241 |
aaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattgggattgggaaaa |
332 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||| |||||| ||||| |
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| T |
26220176 |
-aaggttatagagtgtacaacttgaagaccaaacatattgtgatcagcagagatattaatgttgatgaaaatgcatattcggattgagaaaa |
26220086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 41 - 332
Target Start/End: Original strand, 22363415 - 22363706
Alignment:
| Q |
41 |
cagtgtatctcttgaataggctgccaacaagggctgttcaagggaaaacaccaattgaggcatggataggtgtgaagccttcagccaaacatttgaaggt |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
22363415 |
cagtgtatctcttgaataggctgccaacaagggctgttcaagggaaaacaccaattgaggcatggataggtgtgaagccttctgccaaacatttgaagat |
22363514 |
T |
|
| Q |
141 |
ctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgataaagctgaaaaggggannnnnnngggttatgcagcaagctcc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||||||| |
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| T |
22363515 |
ctttggatcaatatgttatgttcatgttgtagcagcaaaaagatccaaattggatgacaaagctgaaatggggatttttttgggttatgtagcaagctcc |
22363614 |
T |
|
| Q |
241 |
aaaggttatagagtgtacaacttgaagacaaaacaaattgtgatcagcagagacattgatgttgatgaaaatgcatattgggattgggaaaa |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
22363615 |
aaaggttatagagtgtacaacttgaagacaaaacaaattgtgataagaagagacattgatgttgatgaaaatgtatattgggattgggaaaa |
22363706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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